Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011270

Physical Location & Seq

Genomic Coordinates Forward (+)

94355259 .. 94356540

Gene Structure 1282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00073540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAATCCTCTGCAGCACTTGTCCCATTCTCTCAGCTCCCATCTTTCTTCTCACAAAACCCCAACAACAGAATTAGCAAAGCTCATCCTTCTTGGCCATCCAAACCAAGAACTTCTCTGCCAACTCGCATACACTGCCAAAAGATGTATGTCCCTGGATTTGGAGAAGCGTCCCCAGAAGCGAAGGCAGCCAATAACCTCCATAGTTTCTTCACTTATGTTGCGGTTAGGATTGTCACTGCACAGCTTGAGCAGAGTTACAACACAGAGGCATATGAAGAGCTAATGGAGTTTTTGAGTCGAAACTCATTGAATGATGGAGACAAGTTCTGTGCCGATTTGATGCGAGAATCTTCCAGGCATCAGGCTTTAGCTTTGCGCATTTTAGAGGTTCGATCTGCATATTGTAAAAATGATTTTGAATGGGACAACCTAAAGCGACTGGCTTGCAAGATGGTGGATGAATCCAACACAAGACTCATGAGAGATTATGTCTTGGAAACAAGTCATGTGGACAATGAAGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0031976 GO:0031984 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0061077 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RcbX

Protein Analysis

176

Amino Acids

20.16

Weight (kDa)

6.52

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RbcX	PF02341	62 - 167	1e-28	RbcX protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04330
malus_domestica	MD05G1351600.v1.1 MD10G1325900.v1.1
prunus_persica	Prupe.4G016000_v2.0.a1 Prupe.4G016000_v2.0.a1
pyrus_communis	pycom05g31870 pycom10g27580
rosa_chinensis	RchiOBHm_Chr5g0002331 RchiOBHm_Chr5g0002341 RchiOBHm_Chr7g0236991
rosa_laevigata	RLG00000031020
rosa_multiflora	Rmu_sc0006137.1_g000007
rosa_roxburghii	Rroxscaffold_1G00073540
rosa_rugosa	Rorug04G0395300
rosa_samantha	Rh5AG018100 Rh5BG020800 Rh5CG020000 Rh5DG018800 Rh7AG457000
rosa_wichuraiana	Rw5G001700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	380
AciI	CCGC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	2 cut(s)	313, 422
AjnI	CCWGG	2 cut(s)	154, 356
AluBI	AGCT	5 cut(s)	37, 83, 247, 283, 374
AluI	AGCT	5 cut(s)	37, 83, 247, 283, 374
Alw26I	GTCTC	1 cut(s)	315
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	14, 188
AspLEI	GCGC	1 cut(s)	381
BalI	TGGCCA	1 cut(s)	97
BbvI	GCAGC	2 cut(s)	26, 200
BccI	CCATC	4 cut(s)	49, 106, 311, 448
BcgI	CGANNNNNNTGC	2 cut(s)	429, 463
BciT130I	CCWGG	2 cut(s)	156, 358
BcoDI	GTCTC	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	12
BisI	GCNGC	2 cut(s)	15, 189
BlsI	GCNGC	2 cut(s)	16, 190
Bme1390I	CCNGG	2 cut(s)	156, 358
BmrFI	CCNGG	2 cut(s)	156, 358
BmsI	GCATC	2 cut(s)	333, 370
BpuEI	CTTGAG	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	447
BseBI	CCWGG	2 cut(s)	156, 358
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	3 cut(s)	85, 98, 466
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	447
BseXI	GCAGC	2 cut(s)	26, 200
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	97
BslFI	GGGAC	4 cut(s)	8, 137, 157, 440
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	1 cut(s)	315
BsmFI	GGGAC	4 cut(s)	8, 137, 157, 440
BsnI	GGCC	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	395
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	1 cut(s)	46
BspHI	TCATGA	1 cut(s)	480
BspMAI	CTGCAG	1 cut(s)	16
BspQI	GCTCTTC	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	447
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	1 cut(s)	395
Bst2UI	CCWGG	2 cut(s)	156, 358
Bst6I	CTCTTC	1 cut(s)	273
BstAPI	GCANNNNNTGC	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	1 cut(s)	33
BstF5I	GGATG	3 cut(s)	85, 98, 466
BstHHI	GCGC	1 cut(s)	381
BstKTI	GATC	1 cut(s)	398
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	1 cut(s)	395
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 188
BstNI	CCWGG	2 cut(s)	156, 358
BstSCI	CCNGG	2 cut(s)	154, 356
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	2 cut(s)	26, 200
BsuRI	GGCC	1 cut(s)	97
BtsCI	GGATG	3 cut(s)	85, 98, 466
BtsI	GCAGTG	2 cut(s)	133, 237
BtsIMutI	CAGTG	2 cut(s)	133, 237
Cac8I	GCNNGC	1 cut(s)	448
CciI	TCATGA	1 cut(s)	480
CfoI	GCGC	1 cut(s)	381
CseI	GACGC	1 cut(s)	159
CspCI	CAANNNNNGTGG	2 cut(s)	492, 527
CviAII	CATG	2 cut(s)	481, 509
CviJI	RGCY	9 cut(s)	37, 83, 97, 191, 247, 283, 368, 374, 446
CviKI_1	RGCY	9 cut(s)	37, 83, 97, 191, 247, 283, 368, 374, 446
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	1 cut(s)	397
DpnII	GATC	1 cut(s)	395
EaeI	YGGCCR	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EcoRII	CCWGG	2 cut(s)	154, 356
FaeI	CATG	2 cut(s)	484, 512
FaqI	GGGAC	4 cut(s)	8, 137, 157, 440
FatI	CATG	2 cut(s)	480, 508
FauNDI	CATATG	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	15, 189
FokI	GGATG	3 cut(s)	72, 85, 473
Fsp4HI	GCNGC	2 cut(s)	15, 189
FspI	TGCGCA	1 cut(s)	380
GlaI	GCGC	1 cut(s)	380
GluI	GCNGC	2 cut(s)	15, 189
HaeIII	GGCC	1 cut(s)	97
HgaI	GACGC	1 cut(s)	159
HhaI	GCGC	1 cut(s)	381
Hin1II	CATG	2 cut(s)	484, 512
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HinfI	GANTC	5 cut(s)	5, 298, 350, 464, 477
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188III	TCNNGA	1 cut(s)	481
Hpy8I	GTNNAC	1 cut(s)	514
HpyAV	CCTTC	3 cut(s)	99, 178, 515
HpyCH4V	TGCA	4 cut(s)	14, 242, 401, 450
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 188
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	484, 512
HspAI	GCGC	1 cut(s)	379
Kzo9I	GATC	1 cut(s)	395
LguI	GCTCTTC	1 cut(s)	273
LmnI	GCTCC	1 cut(s)	42
LpnPI	CCDG	7 cut(s)	141, 168, 189, 343, 350, 370, 428
Lsp1109I	GCAGC	2 cut(s)	26, 200
LweI	GCATC	2 cut(s)	333, 370
MaeIII	GTNAC	2 cut(s)	235, 257
MalI	GATC	1 cut(s)	397
MboI	GATC	1 cut(s)	395
MboII	GAAGA	4 cut(s)	40, 202, 290, 345
MlsI	TGGCCA	1 cut(s)	97
MluCI	AATT	1 cut(s)	72
MluNI	TGGCCA	1 cut(s)	97
MlyI	GAGTC	2 cut(s)	307, 471
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	4 cut(s)	19, 209, 262, 382
Mox20I	TGGCCA	1 cut(s)	97
MscI	TGGCCA	1 cut(s)	97
Msp20I	TGGCCA	1 cut(s)	97
MspR9I	CCNGG	2 cut(s)	156, 358
MvaI	CCWGG	2 cut(s)	156, 358
MwoI	GCNNNNNNNGC	2 cut(s)	135, 188
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	1 cut(s)	395
NlaIII	CATG	2 cut(s)	484, 512
NmuCI	GTSAC	1 cut(s)	235
NsbI	TGCGCA	1 cut(s)	380
PagI	TCATGA	1 cut(s)	480
PciSI	GCTCTTC	1 cut(s)	273
PfeI	GAWTC	3 cut(s)	5, 350, 464
PkrI	GCNGC	2 cut(s)	16, 190
PleI	GAGTC	2 cut(s)	306, 471
PpsI	GAGTC	2 cut(s)	306, 471
Psp6I	CCWGG	2 cut(s)	154, 356
PspGI	CCWGG	2 cut(s)	154, 356
PstI	CTGCAG	1 cut(s)	16
SapI	GCTCTTC	1 cut(s)	273
SatI	GCNGC	2 cut(s)	15, 189
Sau3AI	GATC	1 cut(s)	395
SchI	GAGTC	2 cut(s)	307, 471
ScrFI	CCNGG	2 cut(s)	156, 358
SetI	ASST	8 cut(s)	39, 85, 201, 249, 285, 376, 393, 435
SfaNI	GCATC	2 cut(s)	333, 370
SfcI	CTRYAG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	1 cut(s)	72
SsiI	CCGC	1 cut(s)	224
StyD4I	CCNGG	2 cut(s)	154, 356
TaqI	TCGA	2 cut(s)	301, 394
TasI	AATT	1 cut(s)	72
TfiI	GAWTC	3 cut(s)	5, 350, 464
TscAI	CASTG	2 cut(s)	140, 244
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	2 cut(s)	14, 188
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	2 cut(s)	291, 477
TspRI	CASTG	2 cut(s)	140, 244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.