Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011270

Physical Location & Seq

Genomic Coordinates Forward (+)

31428216 .. 31429082

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g31870.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAAAGGCTGGACTTGTGGATCACTCAGAAATCCCAGTTCAGTTTGTTCTGCTGTCAGTTACTTATCCATGGAATCCTCTGCGGCAATTCTCCCACTCTCTCAGCTCCCTTCTTTATTCCCACTAAAACCCAACGGAAGCAAATTACCTTACAATCGTTCTTGGCTATCCAATCCTAAACCAAGAGCCTCTCGTCCCCCTCGCATGCACTGCCACAAGATGTATGTCCCTGGATTTGGAGAACCCTCGCCGGAAGCTAAGGCGGCCAACAATCTCCACAGTTTCTTCACTTATGTTGCAGTTAGGATTGTCTGCGCTCAGCTTGAAGTTACAACACGGAGGCATACGAAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0031976 GO:0031984 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0061077 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RcbX

Protein Analysis

119

Amino Acids

13.06

Weight (kDa)

10.11

Isoelectric Point (pI)

61.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04330
malus_domestica	MD05G1351600.v1.1 MD10G1325900.v1.1
prunus_persica	Prupe.4G016000_v2.0.a1 Prupe.4G016000_v2.0.a1
pyrus_communis	pycom05g31870 pycom10g27580
rosa_chinensis	RchiOBHm_Chr5g0002331 RchiOBHm_Chr5g0002341 RchiOBHm_Chr7g0236991
rosa_laevigata	RLG00000031020
rosa_multiflora	Rmu_sc0006137.1_g000007
rosa_roxburghii	Rroxscaffold_1G00073540
rosa_rugosa	Rorug04G0395300
rosa_samantha	Rh5AG018100 Rh5BG020800 Rh5CG020000 Rh5DG018800 Rh7AG457000
rosa_wichuraiana	Rw5G001700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	83, 263
AclWI	GGATC	1 cut(s)	28
AcoI	YGGCCR	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	326
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	4 cut(s)	106, 257, 322, 354
AluI	AGCT	4 cut(s)	106, 257, 322, 354
AlwI	GGATC	1 cut(s)	28
AoxI	GGCC	1 cut(s)	264
AspLEI	GCGC	1 cut(s)	317
BciT130I	CCWGG	1 cut(s)	231
BisI	GCNGC	2 cut(s)	84, 264
BlpI	GCTNAGC	1 cut(s)	318
BlsI	GCNGC	2 cut(s)	85, 265
Bme1390I	CCNGG	1 cut(s)	231
BmrFI	CCNGG	1 cut(s)	231
BmrI	ACTGGG	1 cut(s)	30
BmuI	ACTGGG	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	258
Bpu1102I	GCTNAGC	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	69, 229
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	69, 229
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMII	CTCAG	3 cut(s)	40, 116, 332
BseNI	ACTGG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	251
BslFI	GGGAC	2 cut(s)	180, 212
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmFI	GGGAC	2 cut(s)	180, 212
BsnI	GGCC	1 cut(s)	266
Bsp143I	GATC	1 cut(s)	20
Bsp1720I	GCTNAGC	1 cut(s)	318
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	2 cut(s)	83, 263
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	3 cut(s)	39, 115, 331
BspPI	GGATC	1 cut(s)	28
BspQI	GCTCTTC	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	2 cut(s)	69, 229
BssMI	GATC	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	1 cut(s)	344
BstAPI	GCANNNNNTGC	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	206
BstDEI	CTNAG	4 cut(s)	26, 102, 258, 318
BstDSI	CCRYGG	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	317
BstKTI	GATC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	2 cut(s)	210, 263
BstNI	CCWGG	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	266
BtgI	CCRYGG	1 cut(s)	69
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	206
CfoI	GCGC	1 cut(s)	317
CviAII	CATG	2 cut(s)	70, 205
CviJI	RGCY	8 cut(s)	9, 106, 166, 188, 257, 266, 322, 354
CviKI_1	RGCY	8 cut(s)	9, 106, 166, 188, 257, 266, 322, 354
DdeI	CTNAG	4 cut(s)	26, 102, 258, 318
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
EaeI	YGGCCR	1 cut(s)	264
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
Eco130I	CCWWGG	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	2 cut(s)	73, 208
FaiI	YATR	5 cut(s)	71, 206, 225, 294, 345
FaqI	GGGAC	2 cut(s)	180, 212
FatI	CATG	2 cut(s)	69, 204
Fnu4HI	GCNGC	2 cut(s)	84, 264
Fsp4HI	GCNGC	2 cut(s)	84, 264
GlaI	GCGC	1 cut(s)	316
GluI	GCNGC	2 cut(s)	84, 264
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	1 cut(s)	251
HhaI	GCGC	1 cut(s)	317
Hin1II	CATG	2 cut(s)	73, 208
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	1 cut(s)	251
Hpy188I	TCNGA	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	120
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4V	TGCA	2 cut(s)	208, 299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	210, 263
HpyF3I	CTNAG	4 cut(s)	26, 102, 258, 318
Hsp92II	CATG	2 cut(s)	73, 208
HspAI	GCGC	1 cut(s)	315
Kzo9I	GATC	1 cut(s)	20
LguI	GCTCTTC	1 cut(s)	344
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	4 cut(s)	49, 216, 243, 264
MaeIII	GTNAC	2 cut(s)	59, 328
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MboII	GAAGA	1 cut(s)	277
MluCI	AATT	2 cut(s)	87, 143
MnlI	CCTC	5 cut(s)	88, 199, 210, 256, 333
MspI	CCGG	1 cut(s)	251
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	210, 263
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	1 cut(s)	20
NlaIII	CATG	2 cut(s)	73, 208
NspI	RCATGY	1 cut(s)	208
PaeI	GCATGC	1 cut(s)	208
PciSI	GCTCTTC	1 cut(s)	344
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	85, 265
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
SapI	GCTCTTC	1 cut(s)	344
SatI	GCNGC	2 cut(s)	84, 264
Sau3AI	GATC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	231
SetI	ASST	5 cut(s)	108, 151, 259, 324, 356
SphI	GCATGC	1 cut(s)	208
Sse9I	AATT	2 cut(s)	87, 143
SsiI	CCGC	2 cut(s)	83, 263
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	281
TasI	AATT	2 cut(s)	87, 143
TauI	GCSGC	2 cut(s)	86, 266
TfiI	GAWTC	1 cut(s)	74
TscAI	CASTG	1 cut(s)	215
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	150, 352
TspRI	CASTG	1 cut(s)	215
XceI	RCATGY	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.