Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011270

Physical Location & Seq

Genomic Coordinates Reverse (-)

1354677 .. 1355098

Gene Structure 422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28371

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGGGGTATTGAAACTATTGTTCTACGGCATCCATATGGCAGCTTTACGCATTTTAGAGGTTCGATCTGCATATTGTAAAAATGATTTTGAATGGGACAACCTAAAGCGACTGGCTTGCAAGATGGTGGATGAATCCAACACAAGACTCATGAGAGATTATGTCTTGGAAACAAGTCATGTGGACAATGAAGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0031976 GO:0031984 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0061077 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RcbX

Protein Analysis

66

Amino Acids

7.75

Weight (kDa)

6.71

Isoelectric Point (pI)

32.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RbcX	PF02341	14 - 58	1.6e-07	RbcX protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04330
malus_domestica	MD05G1351600.v1.1 MD10G1325900.v1.1
prunus_persica	Prupe.4G016000_v2.0.a1 Prupe.4G016000_v2.0.a1
pyrus_communis	pycom05g31870 pycom10g27580
rosa_chinensis	RchiOBHm_Chr5g0002331 RchiOBHm_Chr5g0002341 RchiOBHm_Chr7g0236991
rosa_laevigata	RLG00000031020
rosa_multiflora	Rmu_sc0006137.1_g000007
rosa_roxburghii	Rroxscaffold_1G00073540
rosa_rugosa	Rorug04G0395300
rosa_samantha	Rh5AG018100 Rh5BG020800 Rh5CG020000 Rh5DG018800 Rh7AG457000
rosa_wichuraiana	Rw5G001700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	13, 92
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	1 cut(s)	118
BceAI	ACGGC	1 cut(s)	43
BcgI	CGANNNNNNTGC	2 cut(s)	99, 133
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
BmsI	GCATC	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	117
BseGI	GGATG	2 cut(s)	30, 136
BseNI	ACTGG	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	65
BspHI	TCATGA	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	117
BssMI	GATC	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	118
BstF5I	GGATG	2 cut(s)	30, 136
BstKTI	GATC	1 cut(s)	68
BstMBI	GATC	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	53
BtsCI	GGATG	2 cut(s)	30, 136
Cac8I	GCNNGC	1 cut(s)	118
CciI	TCATGA	1 cut(s)	150
CspCI	CAANNNNNGTGG	2 cut(s)	162, 197
CviAII	CATG	2 cut(s)	151, 179
CviJI	RGCY	2 cut(s)	44, 116
CviKI_1	RGCY	2 cut(s)	44, 116
DpnI	GATC	1 cut(s)	67
DpnII	GATC	1 cut(s)	65
FaeI	CATG	2 cut(s)	154, 182
FaiI	YATR	6 cut(s)	36, 38, 73, 152, 162, 180
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	2 cut(s)	150, 178
FauNDI	CATATG	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	2 cut(s)	17, 143
Fsp4HI	GCNGC	1 cut(s)	42
GluI	GCNGC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	154, 182
HinfI	GANTC	2 cut(s)	134, 147
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188III	TCNNGA	1 cut(s)	151
Hpy8I	GTNNAC	1 cut(s)	184
HpyAV	CCTTC	1 cut(s)	185
HpyCH4V	TGCA	2 cut(s)	71, 120
Hsp92II	CATG	2 cut(s)	154, 182
Kzo9I	GATC	1 cut(s)	65
LpnPI	CCDG	1 cut(s)	98
Lsp1109I	GCAGC	1 cut(s)	53
LweI	GCATC	1 cut(s)	39
MalI	GATC	1 cut(s)	67
MboI	GATC	1 cut(s)	65
MlyI	GAGTC	1 cut(s)	141
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	1 cut(s)	52
MslI	CAYNNNNRTG	1 cut(s)	35
NdeI	CATATG	1 cut(s)	36
NdeII	GATC	1 cut(s)	65
NlaIII	CATG	2 cut(s)	154, 182
PagI	TCATGA	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
RseI	CAYNNNNRTG	1 cut(s)	35
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	141
SetI	ASST	3 cut(s)	46, 63, 105
SfaNI	GCATC	1 cut(s)	39
SgeI	CNNG	8 cut(s)	125, 129, 133, 156, 163, 178, 186, 191
SmiMI	CAYNNNNRTG	1 cut(s)	35
TaqI	TCGA	1 cut(s)	64
TfiI	GAWTC	1 cut(s)	134
TseI	GCWGC	1 cut(s)	41
TspDTI	ATGAA	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.