Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009992

Physical Location & Seq

Genomic Coordinates Forward (+)

2471866 .. 2476025

Gene Structure 4160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G04885.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2427 bp

ATGGACTCAGAGAAAATCCTCAATCCAAGACTTGTTTCGATTAATAGCACCAGCCGCAAAGGTATGTCCGTTGAGTTGCCGCAGAAACCGCCGCCACCGCCGTCGTTGTTAGACCGGTTTAAAGCTTTGCTTAATCAGCGTGAAGATGAGTTCGGTGGTGGTGAAGAGGTTTTGCCTCCGAGTATGGATGAGATTGTTCAGCTTTATGAGGTTGTTTTGGGTGAGCTTACTTTCAATTCTAAGCCTATTATCACTGATCTCACTATTATCGCTGGTGAACAACGGGAACATGGTGAAGGAATCGCTAATGCTATTTGCACTCGAATCCTTGAGGCTCCTGTTGAGCAAAAGTTGCCATCTCTGTATCTTTTAGACAGCATTGTTAAGAACATTGGGCGGGATTATGGTCGCTATTTCTCATCCCGTCTACCCGAGGTCTTCTGCCTTGCATATAGGCAAGCACATCCGAGTTTACATCCGTCAATGCGTCACCTGTTTGGGACTTGGTCGAGTGTTTTTCCACCACCTGTACTACGCAAGATTGATATGCAATTGCAACTTTCATCTGCAGCAAACCAATCTTCCGTAGGGGCTTCTGAGCCTAGTCAACCAACGAGAGGTATACATGTTAATCCAAAATATCTTCGCAGGCTGGAGCCCTCAGCCGCCGAAAATAATTTGAGAGGAATTAATTCCAGTGCAAGAGTTTATGGCCAAAATTCACTCGGTGGGTATAATGATTTCGAAGATCAGTTAGAGAGCCCATCTTCACTGTCTAGTACACCAGATGGTTTTACCAGGAGGTCTAATGATGGAGCTAATCCTTCTAATCAAGCTTTTAACTATGGAATGGGTCGAGCTACTAGCAGAGATGATGAACATATGGAATGGCGAAGAAAGGAAAACTTAGGCCAAGGAAATGATCACGAAAGACCTAGAGCGTTGATAGATGCATATGGAGTTGACACCAGCAAACACGTAACGATCAATAAACCAATTCGCGATATGAATGGCATGCACAGTAAGATGGTTACACCATGGCAGAACACTGAGGAAGAAGAGTTTGATTGGGAAGATATGAGCCCTACCCTAGATCGTAGCAGAGCTGGTGAATTTTTGCGATCATCTGTACCAGCATTAGGAAGTGTAAGGGCAAGACCCAGAGTAGGAAACACAAGTGATTTTCATTTAGATTCTGACATTAAGAATGGTGTAAGTCATCAGCTACGAGAAAATTGGAGTTTGTCACAAAATTATCCACATACATCCAACCGTGTTGATACAAGAGCAGGAAAAGACTTGAAAGTATTGGCTTCATCTGTAGGGTTAGTTTCATCAAACAGTGAATTCGGGGCTCCTCCATTTGATAGCATTCAAGATGTTAACTCACGTTTTGGCCGGGCTCTTCCTGATGGGACATGGCCCCATTTGAGTGCTAGAGGACCCAACTCTCTCCCTGTACCTTCTGCTCATTTGCATCATTTGGCAAATCCCGGTAATGCGATGTCAAATCGCTTGCAAGGTAAGCCTTTATATAGGCCCGAAAACCAGGTCTCTCAGAGTCATCTTAATGATATGACTCAACAGAATCAGATGCTAGTTAATTATTTGCCATCCTCATCTGCTATGGCTCCAAGGCCAATGCAATCGTTGTTAACCCACGTAAGTCATGGGTACCCTCCACATGGGTCAACCATTAGACCATCTTTATCAATCCAAGGTGGGGAAGCCATGCATCCTCTTTCTTCAGGAGTTTTATCTCAGATAGGAGCCTCTAATCAACCACCAGGTGGCGCATTCTCTGGTCTGATTGGCTCTCTCATGGCTCAAGGTTTGATCTCATTGAACAATCAGCCTGCTGGTCAGGGACCATTGGGGTTGGAGTTTGATGCAGACATGCTCAAGATACGTAATGAGTCTGCAATCAGTGCTTTATATGGGGATCTCCCGAGGCAATGCACAACCTGTGGTCTACGCTTCAAGTGCCAAGAAGAGCACAGTAAGCACATGGATTGGCATGTAACCAAGAACAGGATGTCCAAGAACCATAAGCAGAACCCTTCTCGGAAATGGTTTGTAAGTGCTAGCATGTGGCTCAGTGGTGCAGAAGCACTTGGAGCTGAAGCAGTACCAGGGTTCTTGCCCACGGAGCCAACAACAGAAAAGAAGGATGACGAAGATATGGCAGTTCCTGCAGATGAAGACCAAACTTCATGTGCATTATGTGGTGAGCCATTTGAAGACTTTTATAGTGATGAAACCGAGGAATGGATGTACAAAGGTGCGGTATACATGAATGCTCCTGAAGAATCAACAACAGATATGGACAAGTCTCAGTTAGGTCCTATAGTGCATGCAAAGTGCAGGCCAGAGTCCAATGGGGGTGATATGGAAGAGGGTAGTCAGAGGAAAAAGATGCGGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

808

Amino Acids

89.23

Weight (kDa)

5.88

Isoelectric Point (pI)

49.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CID	PF04818	79 - 180	1.8e-11	CID domain
zf_PCFS4	PF23228	725 - 791	1.3e-30	PCFS4 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04885
fragaria_vesca	FvH4_3g02510 FvH4_3g02510 FvH4_3g02510 FvH4_3g02510
malus_domestica	MD05G1342300.v1.1 MD10G1315900.v1.1
prunus_persica	Prupe.4G024700_v2.0.a1
pyrus_communis	pycom05g31160 pycom10g26810
rosa_chinensis	RchiOBHm_Chr5g0003821
rosa_laevigata	RLG00000031178
rosa_multiflora	Rmu_sc0004212.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072170
rosa_rugosa	Rorug04G0406900 Rorug04G0407000
rosa_samantha	Rh5AG034400 Rh5BG032700 Rh5CG036800 Rh5DG033100
rosa_wichuraiana	Rw5G003150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1674
AccB1I	GGYRCC	1 cut(s)	1674
AccB7I	CCANNNNNTGG	1 cut(s)	1790
AccI	GTMKAC	4 cut(s)	427, 622, 1972, 2289
AccII	CGCG	1 cut(s)	1002
AciI	CCGC	9 cut(s)	55, 80, 89, 92, 98, 397, 666, 2285, 2419
AclWI	GGATC	1 cut(s)	1950
AcoI	YGGCCR	2 cut(s)	712, 1396
AcsI	RAATTY	3 cut(s)	718, 1112, 1346
AcuI	CTGAAG	3 cut(s)	1731, 2142, 2325
AdeI	CACNNNGTG	2 cut(s)	728, 1790
AfaI	GTAC	7 cut(s)	531, 781, 1131, 1461, 1676, 2130, 2276
AfiI	CCNNNNNNNGG	8 cut(s)	617, 1139, 1166, 1685, 1723, 1790, 2031, 2268
AflIII	ACRYGT	2 cut(s)	625, 976
AgeI	ACCGGT	1 cut(s)	114
AgsI	TTSAA	6 cut(s)	235, 1303, 1376, 1846, 1981, 2240
AjnI	CCWGG	4 cut(s)	797, 1548, 1786, 2131
AjuI	GAANNNNNNNTTGG	2 cut(s)	19, 51
AloI	GAACNNNNNNTCC	2 cut(s)	2021, 2053
AluBI	AGCT	9 cut(s)	125, 202, 226, 818, 836, 860, 1106, 1225, 2120
AluI	AGCT	9 cut(s)	125, 202, 226, 818, 836, 860, 1106, 1225, 2120
Alw21I	GWGCWC	1 cut(s)	1998
Alw26I	GTCTC	2 cut(s)	1558, 2337
AlwI	GGATC	1 cut(s)	1950
AlwNI	CAGNNNCTG	1 cut(s)	2192
Ama87I	CYCGRG	2 cut(s)	431, 1948
AoxI	GGCC	7 cut(s)	712, 910, 1396, 1421, 1538, 1637, 2366
ApeKI	GCWGC	1 cut(s)	569
ApoI	RAATTY	3 cut(s)	718, 1112, 1346
ArsI	GACNNNNNNTTYG	2 cut(s)	1536, 1568
AseI	ATTAAT	2 cut(s)	42, 690
AsiGI	ACCGGT	1 cut(s)	114
Asp700I	GAANNNNTTC	1 cut(s)	691
Asp718I	GGTACC	1 cut(s)	1674
AspLEI	GCGC	1 cut(s)	1796
AspS9I	GGNCC	5 cut(s)	1422, 1442, 1539, 1868, 2342
AsuC2I	CCSGG	2 cut(s)	1400, 1494
AsuHPI	GGTGA	8 cut(s)	173, 233, 287, 305, 482, 1121, 2240, 2396
AsuII	TTCGAA	1 cut(s)	744
AsuNHI	GCTAGC	1 cut(s)	2084
AvaI	CYCGRG	2 cut(s)	431, 1948
AvaII	GGWCC	3 cut(s)	1442, 1868, 2342
BalI	TGGCCA	1 cut(s)	714
BanI	GGYRCC	1 cut(s)	1674
BanII	GRGCYC	5 cut(s)	660, 764, 1085, 1357, 1405
BbsI	GAAGAC	3 cut(s)	430, 2208, 2247
Bbv12I	GWGCWC	1 cut(s)	1998
BbvCI	CCTCAGC	1 cut(s)	661
BbvI	GCAGC	1 cut(s)	581
BccI	CCATC	8 cut(s)	364, 772, 782, 806, 1021, 1406, 1621, 1711
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	4 cut(s)	799, 1550, 1788, 2133
BclI	TGATCA	1 cut(s)	922
BcnI	CCSGG	2 cut(s)	1400, 1494
BcoDI	GTCTC	2 cut(s)	1558, 2337
BfaI	CTAG	8 cut(s)	603, 777, 864, 936, 1091, 1437, 1598, 2085
BfmI	CTRYAG	4 cut(s)	567, 1320, 2193, 2346
BisI	GCNGC	5 cut(s)	55, 80, 92, 570, 666
BlsI	GCNGC	5 cut(s)	56, 81, 93, 571, 667
Bme1390I	CCNGG	6 cut(s)	799, 1400, 1494, 1550, 1788, 2133
Bme18I	GGWCC	3 cut(s)	1442, 1868, 2342
BmeT110I	CYCGRG	2 cut(s)	431, 1948
BmgT120I	GGNCC	5 cut(s)	1422, 1442, 1539, 1868, 2342
BmrFI	CCNGG	6 cut(s)	799, 1400, 1494, 1550, 1788, 2133
BmsI	GCATC	6 cut(s)	940, 1486, 1584, 1744, 1879, 2406
BmtI	GCTAGC	1 cut(s)	2088
BpiI	GAAGAC	3 cut(s)	430, 2208, 2247
BpmI	CTGGAG	1 cut(s)	674
Bpu10I	CCTNAGC	1 cut(s)	661
Bpu14I	TTCGAA	1 cut(s)	744
BpuEI	CTTGAG	3 cut(s)	350, 1812, 1886
BpuMI	CCSGG	2 cut(s)	1400, 1494
BsaAI	YACGTR	3 cut(s)	979, 1663, 1910
BsaI	GGTCTC	1 cut(s)	1558
BsaJI	CCNNGG	9 cut(s)	432, 913, 1037, 1634, 1717, 1949, 2132, 2145, 2262
BsaWI	WCCGGW	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	8 cut(s)	617, 1139, 1166, 1685, 1723, 1790, 2031, 2268
Bse118I	RCCGGY	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	696
Bse3DI	GCAATG	1 cut(s)	1961
BseBI	CCWGG	4 cut(s)	799, 1550, 1788, 2133
BseDI	CCNNGG	9 cut(s)	432, 913, 1037, 1634, 1717, 1949, 2132, 2145, 2262
BseLI	CCNNNNNNNGG	8 cut(s)	617, 1139, 1166, 1685, 1723, 1790, 2031, 2268
BseMI	GCAATG	1 cut(s)	1961
BseMII	CTCAG	8 cut(s)	21, 588, 675, 1041, 1571, 1775, 2110, 2348
BseNI	ACTGG	1 cut(s)	696
BseRI	GAGGAG	1 cut(s)	1347
BseXI	GCAGC	1 cut(s)	581
BsgI	GTGCAG	2 cut(s)	2124, 2383
Bsh1236I	CGCG	1 cut(s)	1002
BshFI	GGCC	7 cut(s)	714, 912, 1398, 1423, 1540, 1639, 2368
BshNI	GGYRCC	1 cut(s)	1674
BshTI	ACCGGT	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	1998
BsiHKCI	CYCGRG	2 cut(s)	431, 1948
BsiSI	CCGG	3 cut(s)	115, 1399, 1494
BslFI	GGGAC	3 cut(s)	514, 1429, 1881
BslI	CCNNNNNNNGG	8 cut(s)	617, 1139, 1166, 1685, 1723, 1790, 2031, 2268
BsmAI	GTCTC	2 cut(s)	1558, 2337
BsmFI	GGGAC	3 cut(s)	514, 1429, 1881
BsmI	GAATGC	3 cut(s)	1371, 1796, 2302
BsnI	GGCC	7 cut(s)	714, 912, 1398, 1423, 1540, 1639, 2368
Bso31I	GGTCTC	1 cut(s)	1558
BsoBI	CYCGRG	2 cut(s)	431, 1948
Bsp119I	TTCGAA	1 cut(s)	744
Bsp1286I	GDGCHC	6 cut(s)	660, 764, 1085, 1357, 1405, 1998
Bsp1407I	TGTACA	1 cut(s)	2274
Bsp143I	GATC	8 cut(s)	256, 748, 922, 984, 1093, 1121, 1836, 1942
Bsp19I	CCATGG	1 cut(s)	1037
Bsp68I	TCGCGA	1 cut(s)	1002
BspACI	CCGC	9 cut(s)	55, 80, 89, 92, 98, 397, 666, 2285, 2419
BspANI	GGCC	7 cut(s)	714, 912, 1398, 1423, 1540, 1639, 2368
BspCNI	CTCAG	8 cut(s)	20, 589, 674, 1042, 1570, 1774, 2109, 2347
BspFNI	CGCG	1 cut(s)	1002
BspMAI	CTGCAG	2 cut(s)	571, 2197
BspOI	GCTAGC	1 cut(s)	2088
BspPI	GGATC	1 cut(s)	1950
BspQI	GCTCTTC	2 cut(s)	1410, 1986
BspT104I	TTCGAA	1 cut(s)	744
BspT107I	GGYRCC	1 cut(s)	1674
BspTNI	GGTCTC	1 cut(s)	1558
BsrDI	GCAATG	1 cut(s)	1961
BsrFI	RCCGGY	1 cut(s)	114
BsrGI	TGTACA	1 cut(s)	2274
BsrI	ACTGG	1 cut(s)	696
BssAI	RCCGGY	1 cut(s)	114
BssECI	CCNNGG	9 cut(s)	432, 913, 1037, 1634, 1717, 1949, 2132, 2145, 2262
BssMI	GATC	8 cut(s)	256, 748, 922, 984, 1093, 1121, 1836, 1942
BssNAI	GTATAC	2 cut(s)	623, 2290
BssT1I	CCWWGG	4 cut(s)	913, 1037, 1634, 1717
Bst1107I	GTATAC	2 cut(s)	623, 2290
Bst2UI	CCWGG	4 cut(s)	799, 1550, 1788, 2133
Bst4CI	ACNGT	5 cut(s)	774, 1022, 1274, 1343, 2000
Bst6I	CTCTTC	5 cut(s)	159, 1053, 1410, 1986, 2388
BstAPI	GCANNNNNTGC	3 cut(s)	352, 1928, 2192
BstAUI	TGTACA	1 cut(s)	2274
BstBAI	YACGTR	3 cut(s)	979, 1663, 1910
BstBI	TTCGAA	1 cut(s)	744
BstC8I	GCNNGC	8 cut(s)	459, 650, 1016, 1517, 1857, 2086, 2355, 2366
BstDSI	CCRYGG	2 cut(s)	1037, 2145
BstFNI	CGCG	1 cut(s)	1002
BstHHI	GCGC	1 cut(s)	1796
BstKTI	GATC	8 cut(s)	259, 751, 925, 987, 1096, 1124, 1839, 1945
BstMAI	GTCTC	2 cut(s)	1558, 2337
BstMBI	GATC	8 cut(s)	256, 748, 922, 984, 1093, 1121, 1836, 1942
BstNI	CCWGG	4 cut(s)	799, 1550, 1788, 2133
BstNSI	RCATGY	6 cut(s)	629, 1018, 1900, 2021, 2092, 2357
BstSCI	CCNGG	6 cut(s)	797, 1398, 1492, 1548, 1786, 2131
BstSFI	CTRYAG	4 cut(s)	567, 1320, 2193, 2346
BstSNI	TACGTA	1 cut(s)	1910
BstUI	CGCG	1 cut(s)	1002
BstV1I	GCAGC	1 cut(s)	581
BstV2I	GAAGAC	3 cut(s)	430, 2208, 2247
BstX2I	RGATCY	1 cut(s)	1942
BstYI	RGATCY	1 cut(s)	1942
BstZ17I	GTATAC	2 cut(s)	623, 2290
BsuRI	GGCC	7 cut(s)	714, 912, 1398, 1423, 1540, 1639, 2368
BtgI	CCRYGG	2 cut(s)	1037, 2145
BtgZI	GCGATG	1 cut(s)	1517
BtsIMutI	CAGTG	7 cut(s)	252, 703, 770, 1047, 1348, 1933, 2104
BtuMI	TCGCGA	1 cut(s)	1002
Cac8I	GCNNGC	8 cut(s)	459, 650, 1016, 1517, 1857, 2086, 2355, 2366
CaiI	CAGNNNCTG	1 cut(s)	2192
CfoI	GCGC	1 cut(s)	1796
Cfr10I	RCCGGY	1 cut(s)	114
Cfr13I	GGNCC	5 cut(s)	1422, 1442, 1539, 1868, 2342
CseI	GACGC	1 cut(s)	476
CsiI	ACCWGGT	2 cut(s)	1548, 1786
Csp6I	GTAC	7 cut(s)	530, 780, 1130, 1460, 1675, 2129, 2275
CspAI	ACCGGT	1 cut(s)	114
CviQI	GTAC	7 cut(s)	530, 780, 1130, 1460, 1675, 2129, 2275
DpnI	GATC	8 cut(s)	258, 750, 924, 986, 1095, 1123, 1838, 1944
DpnII	GATC	8 cut(s)	256, 748, 922, 984, 1093, 1121, 1836, 1942
DraI	TTTAAA	1 cut(s)	121
DraIII	CACNNNGTG	2 cut(s)	728, 1790
EaeI	YGGCCR	2 cut(s)	712, 1396
Eam1104I	CTCTTC	5 cut(s)	159, 1053, 1410, 1986, 2388
EarI	CTCTTC	5 cut(s)	159, 1053, 1410, 1986, 2388
Eco105I	TACGTA	1 cut(s)	1910
Eco130I	CCWWGG	4 cut(s)	913, 1037, 1634, 1717
Eco24I	GRGCYC	5 cut(s)	660, 764, 1085, 1357, 1405
Eco31I	GGTCTC	1 cut(s)	1558
Eco47I	GGWCC	3 cut(s)	1442, 1868, 2342
Eco57I	CTGAAG	3 cut(s)	1731, 2142, 2325
Eco88I	CYCGRG	2 cut(s)	431, 1948
EcoO109I	RGGNCCY	2 cut(s)	1442, 2342
EcoRI	GAATTC	1 cut(s)	1346
EcoRII	CCWGG	4 cut(s)	797, 1548, 1786, 2131
EcoT14I	CCWWGG	4 cut(s)	913, 1037, 1634, 1717
EcoT22I	ATGCAT	2 cut(s)	955, 1737
EcoT38I	GRGCYC	5 cut(s)	660, 764, 1085, 1357, 1405
ErhI	CCWWGG	4 cut(s)	913, 1037, 1634, 1717
FalI	AAGNNNNNCTT	4 cut(s)	114, 146, 890, 922
FaqI	GGGAC	3 cut(s)	514, 1429, 1881
FauI	CCCGC	1 cut(s)	390
FauNDI	CATATG	2 cut(s)	882, 955
FbaI	TGATCA	1 cut(s)	922
FblI	GTMKAC	4 cut(s)	427, 622, 1972, 2289
Fnu4HI	GCNGC	5 cut(s)	55, 80, 92, 570, 666
FriOI	GRGCYC	5 cut(s)	660, 764, 1085, 1357, 1405
Fsp4HI	GCNGC	5 cut(s)	55, 80, 92, 570, 666
FspBI	CTAG	8 cut(s)	603, 777, 864, 936, 1091, 1437, 1598, 2085
GlaI	GCGC	1 cut(s)	1795
GluI	GCNGC	5 cut(s)	55, 80, 92, 570, 666
GsuI	CTGGAG	1 cut(s)	674
HaeIII	GGCC	7 cut(s)	714, 912, 1398, 1423, 1540, 1639, 2368
HapII	CCGG	3 cut(s)	115, 1399, 1494
HgaI	GACGC	1 cut(s)	476
HhaI	GCGC	1 cut(s)	1796
Hin6I	GCGC	1 cut(s)	1794
HinP1I	GCGC	1 cut(s)	1794
HincII	GTYRAC	5 cut(s)	608, 964, 1384, 1656, 1692
HindII	GTYRAC	5 cut(s)	608, 964, 1384, 1656, 1692
HindIII	AAGCTT	2 cut(s)	123, 834
HpaI	GTTAAC	2 cut(s)	1384, 1656
HpaII	CCGG	3 cut(s)	115, 1399, 1494
HphI	GGTGA	8 cut(s)	173, 233, 287, 305, 482, 1121, 2240, 2396
Hpy188III	TCNNGA	8 cut(s)	926, 1001, 1376, 1409, 1749, 1903, 1948, 2303
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	5 cut(s)	290, 834, 1473, 2070, 2161
HpyCH4III	ACNGT	5 cut(s)	774, 1022, 1274, 1343, 2000
HpyCH4IV	ACGT	4 cut(s)	978, 1390, 1662, 1909
HpySE526I	ACGT	4 cut(s)	978, 1390, 1662, 1909
HspAI	GCGC	1 cut(s)	1794
KpnI	GGTACC	1 cut(s)	1678
Ksp22I	TGATCA	1 cut(s)	922
KspAI	GTTAAC	2 cut(s)	1384, 1656
Kzo9I	GATC	8 cut(s)	256, 748, 922, 984, 1093, 1121, 1836, 1942
LguI	GCTCTTC	2 cut(s)	1410, 1986
LmnI	GCTCC	9 cut(s)	340, 655, 815, 1360, 1636, 1769, 2117, 2149, 2305
Lsp1109I	GCAGC	1 cut(s)	581
LweI	GCATC	6 cut(s)	940, 1486, 1584, 1744, 1879, 2406
MabI	ACCWGGT	2 cut(s)	1548, 1786
MaeI	CTAG	8 cut(s)	603, 777, 864, 936, 1091, 1437, 1598, 2085
MaeII	ACGT	4 cut(s)	978, 1390, 1662, 1909
MaeIII	GTNAC	5 cut(s)	488, 979, 1030, 1245, 2020
MalI	GATC	8 cut(s)	258, 750, 924, 986, 1095, 1123, 1838, 1944
MboI	GATC	8 cut(s)	256, 748, 922, 984, 1093, 1121, 1836, 1942
MfeI	CAATTG	1 cut(s)	551
MflI	RGATCY	1 cut(s)	1942
MhlI	GDGCHC	6 cut(s)	660, 764, 1085, 1357, 1405, 1998
MlsI	TGGCCA	1 cut(s)	714
MluNI	TGGCCA	1 cut(s)	714
MlyI	GAGTC	4 cut(s)	1570, 1573, 1925, 2381
MmeI	TCCRAC	2 cut(s)	1293, 1860
Mox20I	TGGCCA	1 cut(s)	714
Mph1103I	ATGCAT	2 cut(s)	955, 1737
MroXI	GAANNNNTTC	1 cut(s)	691
MscI	TGGCCA	1 cut(s)	714
MslI	CAYNNNNRTG	2 cut(s)	1431, 1569
Msp20I	TGGCCA	1 cut(s)	714
MspI	CCGG	3 cut(s)	115, 1399, 1494
MspR9I	CCNGG	6 cut(s)	799, 1400, 1494, 1550, 1788, 2133
MunI	CAATTG	1 cut(s)	551
Mva1269I	GAATGC	3 cut(s)	1371, 1796, 2302
MvaI	CCWGG	4 cut(s)	799, 1550, 1788, 2133
MvnI	CGCG	1 cut(s)	1002
NciI	CCSGG	2 cut(s)	1400, 1494
NcoI	CCATGG	1 cut(s)	1037
NdeI	CATATG	2 cut(s)	882, 955
NdeII	GATC	8 cut(s)	256, 748, 922, 984, 1093, 1121, 1836, 1942
NheI	GCTAGC	1 cut(s)	2084
NmuCI	GTSAC	2 cut(s)	488, 1245
NruI	TCGCGA	1 cut(s)	1002
NsiI	ATGCAT	2 cut(s)	955, 1737
NspI	RCATGY	6 cut(s)	629, 1018, 1900, 2021, 2092, 2357
NspV	TTCGAA	1 cut(s)	744
PaeI	GCATGC	2 cut(s)	1018, 2357
PciI	ACATGT	1 cut(s)	625
PciSI	GCTCTTC	2 cut(s)	1410, 1986
PctI	GAATGC	3 cut(s)	1371, 1796, 2302
PdmI	GAANNNNTTC	1 cut(s)	691
PfeI	GAWTC	5 cut(s)	300, 324, 1193, 1588, 2309
PflFI	GACNNNGTC	1 cut(s)	505
PflMI	CCANNNNNTGG	1 cut(s)	1790
PinAI	ACCGGT	1 cut(s)	114
PkrI	GCNGC	5 cut(s)	56, 81, 93, 571, 667
PleI	GAGTC	4 cut(s)	1569, 1573, 1924, 2380
PpsI	GAGTC	4 cut(s)	1569, 1573, 1924, 2380
Ppu21I	YACGTR	3 cut(s)	979, 1663, 1910
PpuMI	RGGWCCY	2 cut(s)	1442, 2342
PscI	ACATGT	1 cut(s)	625
PshBI	ATTAAT	2 cut(s)	42, 690
Psp5II	RGGWCCY	2 cut(s)	1442, 2342
Psp6I	CCWGG	4 cut(s)	797, 1548, 1786, 2131
PspGI	CCWGG	4 cut(s)	797, 1548, 1786, 2131
PspPI	GGNCC	5 cut(s)	1422, 1442, 1539, 1868, 2342
PspPPI	RGGWCCY	2 cut(s)	1442, 2342
PstI	CTGCAG	2 cut(s)	571, 2197
PstNI	CAGNNNCTG	1 cut(s)	2192
PsuI	RGATCY	1 cut(s)	1942
PsyI	GACNNNGTC	1 cut(s)	505
RruI	TCGCGA	1 cut(s)	1002
RsaI	GTAC	7 cut(s)	531, 781, 1131, 1461, 1676, 2130, 2276
RsaNI	GTAC	7 cut(s)	530, 780, 1130, 1460, 1675, 2129, 2275
RseI	CAYNNNNRTG	2 cut(s)	1431, 1569
SapI	GCTCTTC	2 cut(s)	1410, 1986
SatI	GCNGC	5 cut(s)	55, 80, 92, 570, 666
Sau3AI	GATC	8 cut(s)	256, 748, 922, 984, 1093, 1121, 1836, 1942
Sau96I	GGNCC	5 cut(s)	1422, 1442, 1539, 1868, 2342
SchI	GAGTC	4 cut(s)	1570, 1573, 1925, 2381
ScrFI	CCNGG	6 cut(s)	799, 1400, 1494, 1550, 1788, 2133
SduI	GDGCHC	6 cut(s)	660, 764, 1085, 1357, 1405, 1998
SexAI	ACCWGGT	2 cut(s)	1548, 1786
SfaNI	GCATC	6 cut(s)	940, 1486, 1584, 1744, 1879, 2406
SfcI	CTRYAG	4 cut(s)	567, 1320, 2193, 2346
SfuI	TTCGAA	1 cut(s)	744
SinI	GGWCC	3 cut(s)	1442, 1868, 2342
SmiMI	CAYNNNNRTG	2 cut(s)	1431, 1569
SmlI	CTYRAG	3 cut(s)	329, 1827, 1901
SmoI	CTYRAG	3 cut(s)	329, 1827, 1901
SnaBI	TACGTA	1 cut(s)	1910
SphI	GCATGC	2 cut(s)	1018, 2357
SsiI	CCGC	9 cut(s)	55, 80, 89, 92, 98, 397, 666, 2285, 2419
SspMI	CTAG	8 cut(s)	603, 777, 864, 936, 1091, 1437, 1598, 2085
StyD4I	CCNGG	6 cut(s)	797, 1398, 1492, 1548, 1786, 2131
StyI	CCWWGG	4 cut(s)	913, 1037, 1634, 1717
TaaI	ACNGT	5 cut(s)	774, 1022, 1274, 1343, 2000
TaiI	ACGT	4 cut(s)	981, 1393, 1665, 1912
TaqI	TCGA	5 cut(s)	38, 322, 509, 744, 856
TatI	WGTACW	3 cut(s)	529, 779, 2274
TauI	GCSGC	4 cut(s)	57, 82, 94, 668
TfiI	GAWTC	5 cut(s)	300, 324, 1193, 1588, 2309
TscAI	CASTG	7 cut(s)	259, 703, 777, 1054, 1348, 1933, 2104
TseFI	GTSAC	2 cut(s)	488, 1245
TseI	GCWGC	1 cut(s)	569
Tsp45I	GTSAC	2 cut(s)	488, 1245
TspGWI	ACGGA	4 cut(s)	58, 468, 574, 2162
TspRI	CASTG	7 cut(s)	259, 703, 777, 1054, 1348, 1933, 2104
Tth111I	GACNNNGTC	1 cut(s)	505
Van91I	CCANNNNNTGG	1 cut(s)	1790
VpaK11BI	GGWCC	3 cut(s)	1442, 1868, 2342
VspI	ATTAAT	2 cut(s)	42, 690
XapI	RAATTY	3 cut(s)	718, 1112, 1346
XceI	RCATGY	6 cut(s)	629, 1018, 1900, 2021, 2092, 2357
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1667
XmiI	GTMKAC	4 cut(s)	427, 622, 1972, 2289
XmnI	GAANNNNTTC	1 cut(s)	691
XspI	CTAG	8 cut(s)	603, 777, 864, 936, 1091, 1437, 1598, 2085
Zsp2I	ATGCAT	2 cut(s)	955, 1737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.