Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0009992

Physical Location & Seq

Genomic Coordinates Reverse (-)

46270280 .. 46276379

Gene Structure 6100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1342300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2937 bp

ATGGACTCGGAAAGGCTCACACTTTCCCGAGAGAATCCTAGAATCGCTTTTTCTCCGCACGCCTCCGCCGACGGAAAGGCCATGCCCGGTACTGAGTTAGCTCAGAAGCCCCAACCTCCGACTCCGATAGTCGACCGATTCAGGGCTCTGCTCAAGCAGCGGGAGGAGGACCTGAGGGTTTCGCCCGACGACGAGGTGTCGCCGCCCAGCACTGAGGAAATCGTCCACCTTTACGAGATGGTGTTGTCGGAACTTATCTTTAATTCGAAGCCCATCATTACCGATCTCACCATCATCGCCGGCGAGCAGAGAGACCATGGAAAGGGCATTGCCGACGCCATCTGCGCCCGGATTCTCGAGGTCCCGGTCGAGCATAAACTGCCTTCACTTTATCTTTTAGACAGTATTGTCAAGAATATTGGCCGAGAATATGCAAAGTTTTTCTCTTCCCGTCTTCCTGAGGTCTTTTGCGAGGCATACAGGCAAGTACACCCTAATCAGCATCCTGCCATGCGGCACCTCTTTGGCACTTGGTCAGCAGTGTTTCCACCTTCAGTCCTTTGCAGGATTGAAGAGCAACTGCAATTTTCTCCGCAAGTAAACCACCAATCATCAGGATTAGCACCTTTGAGGACTTCTGAATCTCCTCGACCAACTCATGGCATCCATGTCAATCCAAAATATTTACGTCAGTTGGACAGCTCAACTGTGGATGGTGTTGGACCCCAAAGATTAAACTCAACAGGAAGTGTGAGTCATTCGCCTTTTGCCATGGGGTCCAATCAGTTGCACCCATCTTCAACTGCTAGGCTTGCAAGATCATCTTCGCCTTCAAATATTGGGCTTGATAGGTCTTTGCCATCAGCAGTTGATGAATATGCAGCAGAACAGTCTCCAAAAAGGTTTGTTGAGAGGGCTTCTCCATCTCATTCTGTGTTTGATTATAGACTTGGTGGAGCAATGGGTAAAGATGAGGAGTCGAATGAATGGCGAAGAAATCACTATCTTGATGGCAGTCAGAAGCGGTTTGAGACTTCTGCTGCATATAATGGAGTTGAGCATCAGAACCCAAGAGCTTTAATTGACGCATATGGGAAAGACAGTGCGGATAGAAGTTTAAACAATAAGCCTCTGCTAGTTGGGCGGCTGGGCCTGAACGGTATAGATCGTAAGGCAACTCCAATGTCATGGCAGAATACTGAAGAGGAAGAGTTTGATTGGGAAGATATGGCCCCAAATTTAGCAGACCATGGTAGGGGTAACGATTTCTTGGCCTCAACTGTATCGCCTTCTAGAAGCTACAGGGCAAGCCGTGGAACACAAAATGCAAGCTCCTTGGAGCCAGATGTTAGGAGTACTTGGTCTAGTCAGGCACATCCACCATCAGCCAAACGGTCCTCTATTATAGCTGAAGATCCAGTTCCCCCACTTGGTTTTGGTCATGGATCATCGGGTGCTGTGTCTCGATTTCAGTCTGAGACAAATCATAATCTGAGTTCTCGCTACCCTCAAGACGCCTGGAATATGCCTTTGCATCTCTCGCAGCCTTTGCAGAATCCCCTTAATGCCAAAGGAAGAGGAGGGAATATTCAGACACCCTTTGTGACAGGCGGTATATATTCAGGTGGTGAGAAAATGTCCGCCTTTAGTGACAAGCCTCGAGATATTGATACACAACTTCATGGGCCCATTGCATCAAGAATGGGTTCCTCTAGTGTTGACTCCGTTACTGCTGACTCGAGATCTGGGATGCCAGTGTCAATGGGTTTAAGGCCTCCAGTAAACGTGCATAATTCTCACCCTCCCCCTGTGCACTCAGTTTTTGCAATGCAAAACCAGAGGAATCTTTATGGTTCAATAAATTATAGCAATACTGTAAAAAATCAAAGCCCATATAATCCTTTATACATGCCGGAGCAGCAGTTAGATGGCTATGAAAACAAGGAGTCGAGGTCAACAAAGTCAACTCAGATGCCACAATATCGTCCCTTACAACCACAGTATCGTCTACGTCAGGAGGCACGGGAGAATATTTTTCCACCTGCAGAAACTCAGGTGGCACCTTATTTAGTGGTACCACCCTTAAATCACGGATACACTTTGCGAGGTCCCGTACCTCGTCAACATTTGGGCATACCGACCCCCTATAACCCAAATGGCACTTCGCAGTTCCCCTTGCCACCTCTACCACCGGGCCCCCCTCCTCCCTCGCAAGGCATACTTTCTGTCCAAAACCCTGGTTCAGTTGTCTCTAGCAACCAGCCCGGGAATGCATATTCTGGTTTGATTAGTTCTCTCATGGCTCAAGGTTTGATCTCATTGACAAATCAAAGCCCTGTCCAGGATTCTGTAGGAGTCGAGTTTAATGCTGACCTTCTCAAGGTGCGTCATGAATCTGTAATAAGTGCCCTATATGGTGATCTCCCTAGACAATGCACAACCTGTGGCCTTAGGTTCAAGTGCCAAGAAGAGCACAGTAGTCATATGGATTGGCATGTGACAAAGAATCGTATGTCTAAAAACCGCAAGCAGAAGCCCTCTCGCAAATGGTTTGTAAATACAAGCATGTGGCTCACTGGTGCAGAGGCATTGGGTACCGAGGCAGTCCCTGGATTTTTGCCTGCTGAGACCATAGTGGAAAAGAAGAGTGATGAAGAAATGGCTGTTCCTGCCGATGAGGATCAGAATTCGTGTGCATTATGTGGAGAGACTTTTGATGAATTTTATAGTGACGAGACAGAGGAATGGATGTATAAAGATGCTGTGTACTTGAATGCACCTGACGGAGCAACAGGAGGCATGGATAGGTCACAGTTAGGTCCTATTGTGCATGCTAAATGCAGATCCGAGTCAAGTGTGGTCTCCCTTGAAGGTTTTGGACAAGATCAAGGGGGAATTATTGAAGAGGGTAGTCAAAGAAAACGATTGCGGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

979

Amino Acids

107.86

Weight (kDa)

6.25

Isoelectric Point (pI)

61.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CID	PF04818	82 - 184	8.3e-12	CID domain
zf_PCFS4	PF23228	884 - 950	3.4e-29	PCFS4 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04885
fragaria_vesca	FvH4_3g02510 FvH4_3g02510 FvH4_3g02510 FvH4_3g02510
malus_domestica	MD05G1342300.v1.1 MD10G1315900.v1.1
prunus_persica	Prupe.4G024700_v2.0.a1
pyrus_communis	pycom05g31160 pycom10g26810
rosa_chinensis	RchiOBHm_Chr5g0003821
rosa_laevigata	RLG00000031178
rosa_multiflora	Rmu_sc0004212.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072170
rosa_rugosa	Rorug04G0406900 Rorug04G0407000
rosa_samantha	Rh5AG034400 Rh5BG032700 Rh5CG036800 Rh5DG033100
rosa_wichuraiana	Rw5G003150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2050
AasI	GACNNNNNNGTC	1 cut(s)	407
Acc36I	ACCTGC	1 cut(s)	2050
Acc65I	GGTACC	2 cut(s)	2074, 2594
AccB1I	GGYRCC	4 cut(s)	516, 2059, 2074, 2594
AccB7I	CCANNNNNTGG	1 cut(s)	659
AccI	GTMKAC	2 cut(s)	132, 2008
AclWI	GGATC	4 cut(s)	1409, 1453, 2688, 2838
AcoI	YGGCCR	1 cut(s)	421
AcsI	RAATTY	3 cut(s)	1237, 2686, 2720
AcuI	CTGAAG	3 cut(s)	537, 1221, 1431
AcyI	GRCGYC	2 cut(s)	336, 1515
AfaI	GTAC	7 cut(s)	91, 489, 1357, 2076, 2115, 2596, 2768
AfiI	CCNNNNNNNGG	8 cut(s)	142, 322, 659, 1255, 1430, 2213, 2341, 2380
AgsI	TTSAA	8 cut(s)	572, 801, 834, 1857, 2458, 2773, 2870, 2903
AhdI	GACNNNNNGTC	1 cut(s)	196
AjnI	CCWGG	4 cut(s)	1517, 2236, 2340, 2608
AjuI	GAANNNNNNNTTGG	2 cut(s)	2146, 2178
AluBI	AGCT	6 cut(s)	101, 702, 1076, 1299, 1332, 1409
AluI	AGCT	6 cut(s)	101, 702, 1076, 1299, 1332, 1409
Alw21I	GWGCWC	2 cut(s)	1815, 2475
Alw44I	GTGCAC	1 cut(s)	1811
AlwI	GGATC	4 cut(s)	1409, 1453, 2688, 2838
AlwNI	CAGNNNCTG	1 cut(s)	2609
Ama87I	CYCGRG	5 cut(s)	27, 356, 1659, 1738, 2264
AoxI	GGCC	9 cut(s)	78, 421, 1150, 1230, 1272, 1685, 1772, 2194, 2446
ApaI	GGGCCC	2 cut(s)	1689, 2198
ApaLI	GTGCAC	1 cut(s)	1811
ApeKI	GCWGC	5 cut(s)	157, 881, 1040, 1543, 1918
ApoI	RAATTY	3 cut(s)	1237, 2686, 2720
Asp700I	GAANNNNTTC	1 cut(s)	1705
Asp718I	GGTACC	2 cut(s)	2074, 2594
AspLEI	GCGC	1 cut(s)	347
AsuC2I	CCSGG	6 cut(s)	87, 349, 365, 2193, 2265, 2266
AsuHPI	GGTGA	4 cut(s)	280, 1640, 1790, 2429
AsuII	TTCGAA	1 cut(s)	266
AvaI	CYCGRG	5 cut(s)	27, 356, 1659, 1738, 2264
AvaII	GGWCC	7 cut(s)	169, 361, 722, 777, 1395, 2108, 2819
AxyI	CCTNAGG	3 cut(s)	173, 459, 2450
BaeGI	GKGCMC	4 cut(s)	1689, 1815, 2198, 2410
BaeI	ACNNNNGTAYC	2 cut(s)	1985, 2018
BanI	GGYRCC	4 cut(s)	516, 2059, 2074, 2594
BanII	GRGCYC	3 cut(s)	148, 1689, 2198
BbsI	GAAGAC	1 cut(s)	446
Bbv12I	GWGCWC	2 cut(s)	1815, 2475
BbvI	GCAGC	5 cut(s)	169, 893, 1027, 1555, 1930
BceAI	ACGGC	1 cut(s)	1296
BcgI	CGANNNNNNTGC	2 cut(s)	2348, 2382
BciT130I	CCWGG	4 cut(s)	1519, 2238, 2342, 2610
BciVI	GTATCC	1 cut(s)	2087
BcnI	CCSGG	6 cut(s)	87, 349, 365, 2193, 2265, 2266
BfaI	CTAG	8 cut(s)	39, 807, 1136, 1293, 1365, 1713, 2253, 2427
BfmI	CTRYAG	3 cut(s)	1300, 2043, 2349
BfuAI	ACCTGC	1 cut(s)	2050
BfuI	GTATCC	1 cut(s)	2087
BglII	AGATCT	1 cut(s)	1742
BisI	GCNGC	8 cut(s)	158, 203, 515, 882, 1041, 1145, 1544, 1919
BlsI	GCNGC	8 cut(s)	159, 204, 516, 883, 1042, 1146, 1545, 1920
BmcAI	AGTACT	1 cut(s)	1357
Bme18I	GGWCC	7 cut(s)	169, 361, 722, 777, 1395, 2108, 2819
BmeRI	GACNNNNNGTC	1 cut(s)	196
BmeT110I	CYCGRG	5 cut(s)	27, 356, 1659, 1738, 2264
BmsI	GCATC	8 cut(s)	511, 672, 1069, 1543, 1703, 1740, 1962, 2749
BpiI	GAAGAC	1 cut(s)	446
BplI	GAGNNNNNCTC	2 cut(s)	904, 936
BpmI	CTGGAG	1 cut(s)	1761
Bpu14I	TTCGAA	1 cut(s)	266
BpuEI	CTTGAG	4 cut(s)	137, 1494, 2289, 2363
BpuMI	CCSGG	6 cut(s)	87, 349, 365, 2193, 2265, 2266
BsaBI	GATNNNNATC	1 cut(s)	2679
BsaHI	GRCGYC	2 cut(s)	336, 1515
BsaI	GGTCTC	3 cut(s)	306, 2621, 2866
BsaJI	CCNNGG	9 cut(s)	316, 771, 1249, 1312, 1335, 2236, 2264, 2598, 2608
BsaXI	ACNNNNNCTCC	4 cut(s)	1907, 1937, 1937, 1967
Bsc4I	CCNNNNNNNGG	8 cut(s)	142, 322, 659, 1255, 1430, 2213, 2341, 2380
Bse118I	RCCGGY	1 cut(s)	299
Bse1I	ACTGG	4 cut(s)	1418, 1754, 1778, 2581
Bse21I	CCTNAGG	3 cut(s)	173, 459, 2450
Bse3DI	GCAATG	4 cut(s)	327, 966, 1689, 1833
Bse8I	GATNNNNATC	1 cut(s)	2679
BseBI	CCWGG	4 cut(s)	1519, 2238, 2342, 2610
BseDI	CCNNGG	9 cut(s)	316, 771, 1249, 1312, 1335, 2236, 2264, 2598, 2608
BseGI	GGATG	6 cut(s)	502, 663, 718, 1375, 1755, 2754
BseJI	GATNNNNATC	1 cut(s)	2679
BseLI	CCNNNNNNNGG	8 cut(s)	142, 322, 659, 1255, 1430, 2213, 2341, 2380
BseMI	GCAATG	4 cut(s)	327, 966, 1689, 1833
BseNI	ACTGG	4 cut(s)	1418, 1754, 1778, 2581
BseRI	GAGGAG	5 cut(s)	179, 636, 989, 1593, 2193
BseSI	GKGCMC	4 cut(s)	1689, 1815, 2198, 2410
BseXI	GCAGC	5 cut(s)	169, 893, 1027, 1555, 1930
BseYI	CCCAGC	2 cut(s)	206, 1147
BsgI	GTGCAG	1 cut(s)	2601
Bsh1285I	CGRYCG	2 cut(s)	136, 369
BshFI	GGCC	9 cut(s)	80, 423, 1152, 1232, 1274, 1687, 1774, 2196, 2448
BshNI	GGYRCC	4 cut(s)	516, 2059, 2074, 2594
BsiEI	CGRYCG	2 cut(s)	136, 369
BsiHKAI	GWGCWC	2 cut(s)	1815, 2475
BsiHKCI	CYCGRG	5 cut(s)	27, 356, 1659, 1738, 2264
BsiSI	CCGG	7 cut(s)	87, 300, 349, 365, 1913, 2192, 2265
BslFI	GGGAC	4 cut(s)	347, 1971, 2094, 2591
BslI	CCNNNNNNNGG	8 cut(s)	142, 322, 659, 1255, 1430, 2213, 2341, 2380
BsmFI	GGGAC	4 cut(s)	347, 1971, 2094, 2591
BsmI	GAATGC	2 cut(s)	2275, 2779
BsnI	GGCC	9 cut(s)	80, 423, 1152, 1232, 1274, 1687, 1774, 2196, 2448
Bso31I	GGTCTC	3 cut(s)	306, 2621, 2866
BsoBI	CYCGRG	5 cut(s)	27, 356, 1659, 1738, 2264
Bsp119I	TTCGAA	1 cut(s)	266
Bsp120I	GGGCCC	2 cut(s)	1685, 2194
Bsp1286I	GDGCHC	6 cut(s)	148, 1689, 1815, 2198, 2410, 2475
Bsp19I	CCATGG	3 cut(s)	316, 771, 1249
BspANI	GGCC	9 cut(s)	80, 423, 1152, 1232, 1274, 1687, 1774, 2196, 2448
BspHI	TCATGA	1 cut(s)	2389
BspMAI	CTGCAG	1 cut(s)	2047
BspMI	ACCTGC	1 cut(s)	2050
BspPI	GGATC	4 cut(s)	1409, 1453, 2688, 2838
BspQI	GCTCTTC	2 cut(s)	567, 2463
BspT104I	TTCGAA	1 cut(s)	266
BspT107I	GGYRCC	4 cut(s)	516, 2059, 2074, 2594
BspTNI	GGTCTC	3 cut(s)	306, 2621, 2866
BsrDI	GCAATG	4 cut(s)	327, 966, 1689, 1833
BsrFI	RCCGGY	1 cut(s)	299
BsrI	ACTGG	4 cut(s)	1418, 1754, 1778, 2581
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	9 cut(s)	316, 771, 1249, 1312, 1335, 2236, 2264, 2598, 2608
BssNI	GRCGYC	2 cut(s)	336, 1515
BssT1I	CCWWGG	4 cut(s)	316, 771, 1249, 1335
Bst2UI	CCWGG	4 cut(s)	1519, 2238, 2342, 2610
Bst6I	CTCTTC	8 cut(s)	451, 567, 1197, 1203, 1570, 2463, 2639, 2898
BstACI	GRCGYC	2 cut(s)	336, 1515
BstAPI	GCANNNNNTGC	2 cut(s)	379, 1549
BstBI	TTCGAA	1 cut(s)	266
BstC8I	GCNNGC	9 cut(s)	60, 301, 305, 813, 1309, 1330, 2528, 2622, 2832
BstDSI	CCRYGG	4 cut(s)	316, 771, 1249, 1312
BstENI	CCTNNNNNAGG	1 cut(s)	2378
BstF5I	GGATG	6 cut(s)	502, 663, 718, 1375, 1755, 2754
BstHHI	GCGC	1 cut(s)	347
BstMCI	CGRYCG	2 cut(s)	136, 369
BstMWI	GCNNNNNNNGC	9 cut(s)	157, 344, 379, 812, 1141, 1540, 1549, 1918, 2669
BstNI	CCWGG	4 cut(s)	1519, 2238, 2342, 2610
BstNSI	RCATGY	4 cut(s)	1912, 2498, 2569, 2834
BstSFI	CTRYAG	3 cut(s)	1300, 2043, 2349
BstSLI	GKGCMC	4 cut(s)	1689, 1815, 2198, 2410
BstV1I	GCAGC	5 cut(s)	169, 893, 1027, 1555, 1930
BstV2I	GAAGAC	1 cut(s)	446
BstX2I	RGATCY	3 cut(s)	1414, 1742, 2843
BstXI	CCANNNNNNTGG	2 cut(s)	1188, 2237
BstYI	RGATCY	3 cut(s)	1414, 1742, 2843
Bsu36I	CCTNAGG	3 cut(s)	173, 459, 2450
BsuI	GTATCC	1 cut(s)	2087
BsuRI	GGCC	9 cut(s)	80, 423, 1152, 1232, 1274, 1687, 1774, 2196, 2448
BtgI	CCRYGG	4 cut(s)	316, 771, 1249, 1312
BtgZI	GCGATG	1 cut(s)	280
BtsCI	GGATG	6 cut(s)	502, 663, 718, 1375, 1755, 2754
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	5 cut(s)	210, 546, 1108, 1761, 2574
BveI	ACCTGC	1 cut(s)	2050
Cac8I	GCNNGC	9 cut(s)	60, 301, 305, 813, 1309, 1330, 2528, 2622, 2832
CaiI	CAGNNNCTG	1 cut(s)	2609
CciI	TCATGA	1 cut(s)	2389
CfoI	GCGC	1 cut(s)	347
Cfr10I	RCCGGY	1 cut(s)	299
Cfr9I	CCCGGG	1 cut(s)	2264
CseI	GACGC	4 cut(s)	344, 1094, 1523, 2375
Csp6I	GTAC	7 cut(s)	90, 488, 1356, 2075, 2114, 2595, 2767
CviQI	GTAC	7 cut(s)	90, 488, 1356, 2075, 2114, 2595, 2767
DraI	TTTAAA	1 cut(s)	1119
DrdI	GACNNNNNNGTC	1 cut(s)	407
DriI	GACNNNNNGTC	1 cut(s)	196
DseDI	GACNNNNNNGTC	1 cut(s)	407
EaeI	YGGCCR	1 cut(s)	421
Eam1104I	CTCTTC	8 cut(s)	451, 567, 1197, 1203, 1570, 2463, 2639, 2898
Eam1105I	GACNNNNNGTC	1 cut(s)	196
EarI	CTCTTC	8 cut(s)	451, 567, 1197, 1203, 1570, 2463, 2639, 2898
EciI	GGCGGA	2 cut(s)	55, 1630
Eco130I	CCWWGG	4 cut(s)	316, 771, 1249, 1335
Eco147I	AGGCCT	1 cut(s)	1774
Eco24I	GRGCYC	3 cut(s)	148, 1689, 2198
Eco31I	GGTCTC	3 cut(s)	306, 2621, 2866
Eco47I	GGWCC	7 cut(s)	169, 361, 722, 777, 1395, 2108, 2819
Eco57I	CTGAAG	3 cut(s)	537, 1221, 1431
Eco81I	CCTNAGG	3 cut(s)	173, 459, 2450
Eco88I	CYCGRG	5 cut(s)	27, 356, 1659, 1738, 2264
EcoNI	CCTNNNNNAGG	1 cut(s)	2378
EcoO109I	RGGNCCY	5 cut(s)	169, 361, 2108, 2195, 2819
EcoRI	GAATTC	1 cut(s)	2686
EcoRII	CCWGG	4 cut(s)	1517, 2236, 2340, 2608
EcoT14I	CCWWGG	4 cut(s)	316, 771, 1249, 1335
EcoT22I	ATGCAT	1 cut(s)	2275
EcoT38I	GRGCYC	3 cut(s)	148, 1689, 2198
ErhI	CCWWGG	4 cut(s)	316, 771, 1249, 1335
FalI	AAGNNNNNCTT	4 cut(s)	808, 840, 2205, 2237
FaqI	GGGAC	4 cut(s)	347, 1971, 2094, 2591
FauI	CCCGC	1 cut(s)	153
FauNDI	CATATG	2 cut(s)	1090, 2484
FblI	GTMKAC	2 cut(s)	132, 2008
Fnu4HI	GCNGC	8 cut(s)	158, 203, 515, 882, 1041, 1145, 1544, 1919
FokI	GGATG	6 cut(s)	489, 650, 725, 1362, 1762, 2761
FriOI	GRGCYC	3 cut(s)	148, 1689, 2198
Fsp4HI	GCNGC	8 cut(s)	158, 203, 515, 882, 1041, 1145, 1544, 1919
FspBI	CTAG	8 cut(s)	39, 807, 1136, 1293, 1365, 1713, 2253, 2427
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	8 cut(s)	158, 203, 515, 882, 1041, 1145, 1544, 1919
GsaI	CCCAGC	2 cut(s)	210, 1151
GsuI	CTGGAG	1 cut(s)	1761
HaeIII	GGCC	9 cut(s)	80, 423, 1152, 1232, 1274, 1687, 1774, 2196, 2448
HapII	CCGG	7 cut(s)	87, 300, 349, 365, 1913, 2192, 2265
HgaI	GACGC	4 cut(s)	344, 1094, 1523, 2375
HhaI	GCGC	1 cut(s)	347
Hin1I	GRCGYC	2 cut(s)	336, 1515
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HincII	GTYRAC	5 cut(s)	133, 1720, 1956, 1965, 2123
HindII	GTYRAC	5 cut(s)	133, 1720, 1956, 1965, 2123
HpaII	CCGG	7 cut(s)	87, 300, 349, 365, 1913, 2192, 2265
HphI	GGTGA	4 cut(s)	280, 1640, 1790, 2429
Hpy99I	CGWCG	4 cut(s)	74, 191, 194, 338
HpyAV	CCTTC	6 cut(s)	393, 561, 840, 1299, 2384, 2864
HpyCH4IV	ACGT	3 cut(s)	688, 1785, 2011
HpyF10VI	GCNNNNNNNGC	9 cut(s)	157, 344, 379, 812, 1141, 1540, 1549, 1918, 2669
HpySE526I	ACGT	3 cut(s)	688, 1785, 2011
Hsp92I	GRCGYC	2 cut(s)	336, 1515
HspAI	GCGC	1 cut(s)	345
KpnI	GGTACC	2 cut(s)	2078, 2598
KroI	GCCGGC	1 cut(s)	299
KroNI	GCCGGC	1 cut(s)	301
LguI	GCTCTTC	2 cut(s)	567, 2463
LmnI	GCTCC	5 cut(s)	956, 1337, 1339, 1915, 2786
Lsp1109I	GCAGC	5 cut(s)	169, 893, 1027, 1555, 1930
LweI	GCATC	8 cut(s)	511, 672, 1069, 1543, 1703, 1740, 1962, 2749
MaeI	CTAG	8 cut(s)	39, 807, 1136, 1293, 1365, 1713, 2253, 2427
MaeII	ACGT	3 cut(s)	688, 1785, 2011
MaeIII	GTNAC	7 cut(s)	1259, 1603, 1649, 1726, 2497, 2729, 2808
MflI	RGATCY	3 cut(s)	1414, 1742, 2843
MhlI	GDGCHC	6 cut(s)	148, 1689, 1815, 2198, 2410, 2475
MluCI	AATT	9 cut(s)	262, 584, 1080, 1237, 1792, 1861, 2686, 2720, 2895
MlyI	GAGTC	8 cut(s)	115, 763, 986, 1715, 1730, 1955, 2364, 2858
MmeI	TCCRAC	4 cut(s)	143, 228, 675, 700
Mph1103I	ATGCAT	1 cut(s)	2275
MreI	CGCCGGCG	1 cut(s)	299
MroNI	GCCGGC	1 cut(s)	299
MroXI	GAANNNNTTC	1 cut(s)	1705
MseI	TTAA	9 cut(s)	261, 734, 1079, 1118, 1563, 1769, 2084, 2364, 2935
MspA1I	CMGCKG	1 cut(s)	160
MspI	CCGG	7 cut(s)	87, 300, 349, 365, 1913, 2192, 2265
MssI	GTTTAAAC	1 cut(s)	1119
Mva1269I	GAATGC	2 cut(s)	2275, 2779
MvaI	CCWGG	4 cut(s)	1519, 2238, 2342, 2610
MwoI	GCNNNNNNNGC	9 cut(s)	157, 344, 379, 812, 1141, 1540, 1549, 1918, 2669
NaeI	GCCGGC	1 cut(s)	301
NciI	CCSGG	6 cut(s)	87, 349, 365, 2193, 2265, 2266
NcoI	CCATGG	3 cut(s)	316, 771, 1249
NdeI	CATATG	2 cut(s)	1090, 2484
NgoMIV	GCCGGC	1 cut(s)	299
NmeAIII	GCCGAG	1 cut(s)	449
NmuCI	GTSAC	5 cut(s)	1603, 1649, 2497, 2729, 2808
NsiI	ATGCAT	1 cut(s)	2275
NspI	RCATGY	4 cut(s)	1912, 2498, 2569, 2834
NspV	TTCGAA	1 cut(s)	266
PaeI	GCATGC	1 cut(s)	2834
PaeR7I	CTCGAG	3 cut(s)	356, 1659, 1738
PagI	TCATGA	1 cut(s)	2389
PaqCI	CACCTGC	1 cut(s)	2050
PceI	AGGCCT	1 cut(s)	1774
PciSI	GCTCTTC	2 cut(s)	567, 2463
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PctI	GAATGC	2 cut(s)	2275, 2779
PdiI	GCCGGC	1 cut(s)	301
PdmI	GAANNNNTTC	1 cut(s)	1705
PflMI	CCANNNNNTGG	1 cut(s)	659
PfoI	TCCNGGA	1 cut(s)	2340
PkrI	GCNGC	8 cut(s)	159, 204, 516, 883, 1042, 1146, 1545, 1920
PleI	GAGTC	8 cut(s)	115, 762, 985, 1715, 1730, 1954, 2363, 2857
PmeI	GTTTAAAC	1 cut(s)	1119
PpsI	GAGTC	8 cut(s)	115, 762, 985, 1715, 1730, 1954, 2363, 2857
PpuMI	RGGWCCY	4 cut(s)	169, 361, 2108, 2819
Psp5II	RGGWCCY	4 cut(s)	169, 361, 2108, 2819
Psp6I	CCWGG	4 cut(s)	1517, 2236, 2340, 2608
PspFI	CCCAGC	2 cut(s)	206, 1147
PspGI	CCWGG	4 cut(s)	1517, 2236, 2340, 2608
PspOMI	GGGCCC	2 cut(s)	1685, 2194
PspPPI	RGGWCCY	4 cut(s)	169, 361, 2108, 2819
PstI	CTGCAG	1 cut(s)	2047
PstNI	CAGNNNCTG	1 cut(s)	2609
PsuI	RGATCY	3 cut(s)	1414, 1742, 2843
RsaI	GTAC	7 cut(s)	91, 489, 1357, 2076, 2115, 2596, 2768
RsaNI	GTAC	7 cut(s)	90, 488, 1356, 2075, 2114, 2595, 2767
SalI	GTCGAC	1 cut(s)	131
SapI	GCTCTTC	2 cut(s)	567, 2463
SaqAI	TTAA	9 cut(s)	261, 734, 1079, 1118, 1563, 1769, 2084, 2364, 2935
SatI	GCNGC	8 cut(s)	158, 203, 515, 882, 1041, 1145, 1544, 1919
ScaI	AGTACT	1 cut(s)	1357
SchI	GAGTC	8 cut(s)	115, 763, 986, 1715, 1730, 1955, 2364, 2858
SduI	GDGCHC	6 cut(s)	148, 1689, 1815, 2198, 2410, 2475
SfaNI	GCATC	8 cut(s)	511, 672, 1069, 1543, 1703, 1740, 1962, 2749
SfcI	CTRYAG	3 cut(s)	1300, 2043, 2349
Sfr274I	CTCGAG	3 cut(s)	356, 1659, 1738
SfuI	TTCGAA	1 cut(s)	266
SgrAI	CRCCGGYG	1 cut(s)	299
SinI	GGWCC	7 cut(s)	169, 361, 722, 777, 1395, 2108, 2819
SlaI	CTCGAG	3 cut(s)	356, 1659, 1738
SmaI	CCCGGG	1 cut(s)	2266
SmlI	CTYRAG	7 cut(s)	152, 356, 1509, 1659, 1738, 2304, 2378
SmoI	CTYRAG	7 cut(s)	152, 356, 1509, 1659, 1738, 2304, 2378
SphI	GCATGC	1 cut(s)	2834
Sse9I	AATT	9 cut(s)	262, 584, 1080, 1237, 1792, 1861, 2686, 2720, 2895
SseBI	AGGCCT	1 cut(s)	1774
SspI	AATATT	5 cut(s)	418, 683, 838, 1588, 2032
SspMI	CTAG	8 cut(s)	39, 807, 1136, 1293, 1365, 1713, 2253, 2427
StuI	AGGCCT	1 cut(s)	1774
StyI	CCWWGG	4 cut(s)	316, 771, 1249, 1335
TaiI	ACGT	3 cut(s)	691, 1788, 2014
TaqII	GACCGA	1 cut(s)	150
TasI	AATT	9 cut(s)	262, 584, 1080, 1237, 1792, 1861, 2686, 2720, 2895
TatI	WGTACW	3 cut(s)	487, 1355, 2766
TauI	GCSGC	3 cut(s)	205, 517, 1147
Tru1I	TTAA	9 cut(s)	261, 734, 1079, 1118, 1563, 1769, 2084, 2364, 2935
Tru9I	TTAA	9 cut(s)	261, 734, 1079, 1118, 1563, 1769, 2084, 2364, 2935
TscAI	CASTG	5 cut(s)	217, 546, 1108, 1761, 2581
TseFI	GTSAC	5 cut(s)	1603, 1649, 2497, 2729, 2808
TseI	GCWGC	5 cut(s)	157, 881, 1040, 1543, 1918
Tsp45I	GTSAC	5 cut(s)	1603, 1649, 2497, 2729, 2808
TspDTI	ATGAA	7 cut(s)	888, 999, 1670, 1950, 2406, 2667, 2733
TspGWI	ACGGA	4 cut(s)	87, 1714, 2106, 2799
TspMI	CCCGGG	1 cut(s)	2264
TspRI	CASTG	5 cut(s)	217, 546, 1108, 1761, 2581
Van91I	CCANNNNNTGG	1 cut(s)	659
VneI	GTGCAC	1 cut(s)	1811
VpaK11BI	GGWCC	7 cut(s)	169, 361, 722, 777, 1395, 2108, 2819
XagI	CCTNNNNNAGG	1 cut(s)	2378
XapI	RAATTY	3 cut(s)	1237, 2686, 2720
XbaI	TCTAGA	1 cut(s)	1292
XceI	RCATGY	4 cut(s)	1912, 2498, 2569, 2834
XhoI	CTCGAG	3 cut(s)	356, 1659, 1738
XmaI	CCCGGG	1 cut(s)	2264
XmiI	GTMKAC	2 cut(s)	132, 2008
XmnI	GAANNNNTTC	1 cut(s)	1705
XspI	CTAG	8 cut(s)	39, 807, 1136, 1293, 1365, 1713, 2253, 2427
ZrmI	AGTACT	1 cut(s)	1357
Zsp2I	ATGCAT	1 cut(s)	2275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.