Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004212.1

Orthogroup ID

OG0009992

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 5208

Gene Structure 5208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004212.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2895 bp

atggagctttcccgagaaaaccctagacccctcgcttttccggtcaccaagcccatgcccgaccttgctcccaagccgccgcctccgccgccgaccacgactccgattatcgaccgctacaaagtcctgctcaagcagcgggacgacgacctcagggtctcgcccgaggacgacgtgtcgccgccgagcaccgaggagattgtgcagctctacgagatgctcttgtccgagctcgtgttcaattcgaagccgatcattaccgatctcactatcatcgccggcgagcagcgagaccacggcaagggcatcgccgacgccatctgcgctcggattctcgaggtcccagttgagcacaagctgccttcgttatatcttttagatagtattgtaaagaacattggccgagactatgtcagatacttctcttcccgtctacctgaggtcttctgcgaggcatacaggcaagttcaccccaaccagcattctgccatgcgccacctctttggcacttggtcggcagtgtttccaccttcagtccttcgcaggattgaagcgcagctgcagttttctccacaggtaaaccagcaatcatcaggtttacctcctttgagagcatctgaatctcctcggccggctcatggcatccatgtcaatccaaaatatttacgtcagttggagacctcagatgtggatactgttggacctcaaagattaagctcaacaggaaatatgagtcatacagattttcctgttgggtccaatcgtatacagccatcttcaactgtcagacttgcaagatcttcttcaccttcaaatattggccttgatgaatatgaagtagaaaattctcctaaaaggtttggtgaccgggcttctccatctaattctgtgtatgattatagagcaatcagagatgaggagccaaatgaaaggcggagaaaacattatcttgatggtagtcagaaccggttaaataatggacttgaacatcaaagaccaagagctttgattgatgcatatggaaaagacagtggagatagaagtttaaatgataagcctttgcatgttgggcggcttggtgtaaatggtctagatcacaaagcaacttcaatgtcatggcagaacactgaggaggatgagtttgattggaaatctgtcggcccacctataaccgagcacactaggaatcacaaagcaacttcaatgtcatggcagaatactgaggaggatgagtttgattggaaatctgtcggcccacctataaccgagcacactaggagtaatgatttcttgccttcaaatataccaccttctagaagctacagggccaggcctggcctcggaacactgaatgcaagctccttagattctgatattgggagtagttggtctactcaggcatacctaccttccgaacagtcctctgtagttgctgaagatccagtcccctcgctttcttttactcgtggatttgcgggtagattccagtccgagataaatcataatcagggttctcgccaccctcaagaaccctggaatatgcctttccatccctctcagcattcacagactcttcttaattccaaagaaataggtagaaatttccatatgcctggtatgtctctaggtggtgagaaagtgtcaactgatgccgatgtgcgacttcacgggccaacatcaagaatgggttctggtgctgactttgttaatgctgactctcggttagttataccaatgtcagtgggtttaaggcctccagtaaacgtgcacaattctcacccgccgcctgtgcaccctatttttccattgcaaaaccagaggagtcagtatggtttcataaattctgtcgatactgctaagaatcaaggtccatataagtctatgtatacgcctgagcagcagttggacggttatgaaaacaaggatttggggttggcaaagctaagtcagttgactagtcagaatgccagactcatacctgttaatcagcgaaaccaggctcaggtcagtcctttccaaccacaatttcatccacatcaggagccaccttattcagtggtaccacgtggatacaatttgcaagggcagggtggtactggtattgcaaatcctgtacctcgtctacagttgggcttaccaactcactataccccaaacactaatttgcgtggggactccttgccacctctaccacctggcccccctcctcccatgcaaggtgtatttcctggtcaaaaggctggtccggtagtctctagcaaccagcaagggagttcatatactggtttgattagttctctcatggctcaaggtgtgatctcattgacaaatccaagtggactgcaggattctgtaggagttgagtttaatgcagaccttcttaaggtacgtcatgaatctgcaataactgctctgtattatgatctcccaagacaatgcacaacctgtggtctccggttcaagtgccaagaggagcacagtagtcatatggattggcatgtgacaaagaacaggatgtctaaaaaccgtaagcagaagccctctcgtaagtggtttgtaactacaagcatgtggctcagtggtgcagaggctttgggaactgatgcagttcctggctttttacctgctgacaccattgcggaaaagaagagtgatgaagaattggctgttcctgctgatgaggatcaaaattcatgcgcgttatgtggagagccttttgatgatttttatagtgatgagacagaggagtggatgtataaaggtgctgtgtacttgaatgcacctcatggttcaacaccagacatggataggtcacaattaggtcctatagtgcatgccaaatgcaggccggagtccactgatgtatcccctggagactttggacaagatgaaggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

965

Amino Acids

107.11

Weight (kDa)

6.05

Isoelectric Point (pI)

57.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04885
fragaria_vesca	FvH4_3g02510 FvH4_3g02510 FvH4_3g02510 FvH4_3g02510
malus_domestica	MD05G1342300.v1.1 MD10G1315900.v1.1
prunus_persica	Prupe.4G024700_v2.0.a1
pyrus_communis	pycom05g31160 pycom10g26810
rosa_chinensis	RchiOBHm_Chr5g0003821
rosa_laevigata	RLG00000031178
rosa_multiflora	Rmu_sc0004212.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072170
rosa_rugosa	Rorug04G0406900 Rorug04G0407000
rosa_samantha	Rh5AG034400 Rh5BG032700 Rh5CG036800 Rh5DG033100
rosa_wichuraiana	Rw5G003150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
Acc36I	ACCTGC	1 cut(s)	2632
Acc65I	GGTACC	1 cut(s)	2059
AccB1I	GGYRCC	1 cut(s)	2059
AccI	GTMKAC	5 cut(s)	433, 766, 1391, 1886, 2122
AccII	CGCG	1 cut(s)	2699
AclWI	GGATC	2 cut(s)	1433, 2691
AcoI	YGGCCR	2 cut(s)	400, 629
AcsI	RAATTY	4 cut(s)	844, 1600, 1840, 2689
AcuI	CTGAAG	2 cut(s)	516, 1455
AcvI	CACGTG	1 cut(s)	2066
AcyI	GRCGYC	1 cut(s)	315
AfaI	GTAC	5 cut(s)	2061, 2095, 2115, 2388, 2771
AfiI	CCNNNNNNNGG	7 cut(s)	301, 638, 1340, 2002, 2216, 2383, 2844
AflII	CTTAAG	1 cut(s)	2381
AflIII	ACRYGT	1 cut(s)	174
AgeI	ACCGGT	1 cut(s)	966
AhdI	GACNNNNNGTC	1 cut(s)	175
AhlI	ACTAGT	1 cut(s)	1955
AjiI	CACGTC	1 cut(s)	175
AjnI	CCWGG	9 cut(s)	1328, 1333, 1532, 1612, 1995, 2194, 2227, 2611, 2869
AjuI	GAANNNNNNNTTGG	2 cut(s)	2010, 2042
Alw21I	GWGCWC	8 cut(s)	191, 234, 354, 1179, 1272, 1770, 1794, 2478
Alw26I	GTCTC	9 cut(s)	163, 285, 399, 671, 1626, 2257, 2456, 2732, 2868
Alw44I	GTGCAC	2 cut(s)	1766, 1790
AlwI	GGATC	2 cut(s)	1433, 2691
AlwNI	CAGNNNCTG	1 cut(s)	2612
Ama87I	CYCGRG	3 cut(s)	12, 164, 335
ApaLI	GTGCAC	2 cut(s)	1766, 1790
ApeKI	GCWGC	7 cut(s)	136, 205, 286, 358, 556, 559, 1897
ApoI	RAATTY	4 cut(s)	844, 1600, 1840, 2689
ArsI	GACNNNNNNTTYG	2 cut(s)	2227, 2259
AsiGI	ACCGGT	1 cut(s)	966
Asp700I	GAANNNNTTC	1 cut(s)	1687
Asp718I	GGTACC	1 cut(s)	2059
AspLEI	GCGC	4 cut(s)	326, 495, 556, 2699
AsuC2I	CCSGG	1 cut(s)	869
AsuHPI	GGTGA	6 cut(s)	37, 461, 798, 875, 1643, 1769
AsuII	TTCGAA	1 cut(s)	245
AvaI	CYCGRG	3 cut(s)	12, 164, 335
AvaII	GGWCC	6 cut(s)	340, 701, 756, 1868, 2243, 2822
AxyI	CCTNAGG	2 cut(s)	152, 438
BaeGI	GKGCMC	2 cut(s)	1770, 1794
BaeI	ACNNNNGTAYC	2 cut(s)	2847, 2880
BanI	GGYRCC	1 cut(s)	2059
BanII	GRGCYC	1 cut(s)	234
BauI	CACGAG	2 cut(s)	233, 1464
BbrPI	CACGTG	1 cut(s)	2066
BbsI	GAAGAC	1 cut(s)	436
Bbv12I	GWGCWC	8 cut(s)	191, 234, 354, 1179, 1272, 1770, 1794, 2478
BbvI	GCAGC	7 cut(s)	148, 217, 298, 345, 546, 568, 1909
BccI	CCATC	5 cut(s)	326, 781, 886, 947, 1557
BceAI	ACGGC	1 cut(s)	313
BcgI	CGANNNNNNTGC	2 cut(s)	289, 323
BciT130I	CCWGG	9 cut(s)	1330, 1335, 1534, 1614, 1997, 2196, 2229, 2613, 2871
BciVI	GTATCC	3 cut(s)	685, 2063, 2875
BcnI	CCSGG	1 cut(s)	869
BcoDI	GTCTC	9 cut(s)	163, 285, 399, 671, 1626, 2257, 2456, 2732, 2868
BcuI	ACTAGT	1 cut(s)	1955
BfaI	CTAG	8 cut(s)	24, 1091, 1182, 1275, 1314, 1625, 1956, 2256
BfmI	CTRYAG	7 cut(s)	560, 1321, 1425, 2123, 2342, 2352, 2826
BfrI	CTTAAG	1 cut(s)	2381
BfuAI	ACCTGC	1 cut(s)	2632
BfuI	GTATCC	3 cut(s)	685, 2063, 2875
BglII	AGATCT	1 cut(s)	797
Bme18I	GGWCC	6 cut(s)	340, 701, 756, 1868, 2243, 2822
BmeRI	GACNNNNNGTC	1 cut(s)	175
BmeT110I	CYCGRG	3 cut(s)	12, 164, 335
BmgBI	CACGTC	1 cut(s)	175
BmiI	GGNNCC	6 cut(s)	342, 757, 921, 2043, 2061, 2200
BmrI	ACTGGG	1 cut(s)	338
BmsI	GCATC	7 cut(s)	207, 315, 623, 651, 1003, 1639, 2593
BmuI	ACTGGG	1 cut(s)	338
BpiI	GAAGAC	1 cut(s)	436
BpmI	CTGGAG	2 cut(s)	1740, 2892
Bpu10I	CCTNAGC	2 cut(s)	1893, 2001
Bpu14I	TTCGAA	1 cut(s)	245
BpuEI	CTTGAG	3 cut(s)	116, 1509, 2292
BpuMI	CCSGG	1 cut(s)	869
BsaAI	YACGTR	1 cut(s)	2066
BsaBI	GATNNNNATC	1 cut(s)	2682
BsaHI	GRCGYC	1 cut(s)	315
BsaI	GGTCTC	4 cut(s)	163, 285, 671, 2456
BsaJI	CCNNGG	7 cut(s)	165, 192, 295, 626, 1339, 1532, 2869
BsaWI	WCCGGW	4 cut(s)	40, 966, 2245, 2454
BsaXI	ACNNNNNCTCC	8 cut(s)	85, 115, 1124, 1154, 1217, 1247, 2738, 2768
Bsc4I	CCNNNNNNNGG	7 cut(s)	301, 638, 1340, 2002, 2216, 2383, 2844
Bse118I	RCCGGY	3 cut(s)	278, 631, 966
Bse1I	ACTGG	6 cut(s)	344, 1442, 1486, 1757, 2101, 2287
Bse21I	CCTNAGG	2 cut(s)	152, 438
Bse3DI	GCAATG	2 cut(s)	1805, 2634
Bse8I	GATNNNNATC	1 cut(s)	2682
BseBI	CCWGG	9 cut(s)	1330, 1335, 1534, 1614, 1997, 2196, 2229, 2613, 2871
BseDI	CCNNGG	7 cut(s)	165, 192, 295, 626, 1339, 1532, 2869
BseGI	GGATG	7 cut(s)	642, 1141, 1234, 1549, 2029, 2520, 2757
BseJI	GATNNNNATC	1 cut(s)	2682
BseLI	CCNNNNNNNGG	7 cut(s)	301, 638, 1340, 2002, 2216, 2383, 2844
BseMI	GCAATG	2 cut(s)	1805, 2634
BseNI	ACTGG	6 cut(s)	344, 1442, 1486, 1757, 2101, 2287
BseRI	GAGGAG	9 cut(s)	209, 615, 932, 1145, 1238, 1834, 2196, 2486, 2759
BseSI	GKGCMC	2 cut(s)	1770, 1794
BseX3I	CGGCCG	1 cut(s)	629
BseXI	GCAGC	7 cut(s)	148, 217, 298, 345, 546, 568, 1909
BsgI	GTGCAG	2 cut(s)	224, 2604
Bsh1236I	CGCG	1 cut(s)	2699
Bsh1285I	CGRYCG	2 cut(s)	115, 632
BshNI	GGYRCC	1 cut(s)	2059
BshTI	ACCGGT	1 cut(s)	966
BsiEI	CGRYCG	2 cut(s)	115, 632
BsiHKAI	GWGCWC	8 cut(s)	191, 234, 354, 1179, 1272, 1770, 1794, 2478
BsiHKCI	CYCGRG	3 cut(s)	12, 164, 335
BsiSI	CCGG	8 cut(s)	41, 279, 632, 868, 967, 2246, 2455, 2849
BslFI	GGGAC	4 cut(s)	155, 326, 1430, 2186
BslI	CCNNNNNNNGG	7 cut(s)	301, 638, 1340, 2002, 2216, 2383, 2844
BsmAI	GTCTC	9 cut(s)	163, 285, 399, 671, 1626, 2257, 2456, 2732, 2868
BsmFI	GGGAC	4 cut(s)	155, 326, 1430, 2186
BsmI	GAATGC	5 cut(s)	481, 1357, 1561, 1969, 2782
Bso31I	GGTCTC	4 cut(s)	163, 285, 671, 2456
BsoBI	CYCGRG	3 cut(s)	12, 164, 335
Bsp119I	TTCGAA	1 cut(s)	245
Bsp1286I	GDGCHC	8 cut(s)	191, 234, 354, 1179, 1272, 1770, 1794, 2478
Bsp143I	GATC	8 cut(s)	252, 262, 797, 1093, 1438, 2316, 2422, 2683
BspFNI	CGCG	1 cut(s)	2699
BspHI	TCATGA	1 cut(s)	2392
BspLI	GGNNCC	6 cut(s)	342, 757, 921, 2043, 2061, 2200
BspMAI	CTGCAG	2 cut(s)	564, 2346
BspMI	ACCTGC	1 cut(s)	2632
BspPI	GGATC	2 cut(s)	1433, 2691
BspT104I	TTCGAA	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	2059
BspTI	CTTAAG	1 cut(s)	2381
BspTNI	GGTCTC	4 cut(s)	163, 285, 671, 2456
BsrDI	GCAATG	2 cut(s)	1805, 2634
BsrFI	RCCGGY	3 cut(s)	278, 631, 966
BsrI	ACTGG	6 cut(s)	344, 1442, 1486, 1757, 2101, 2287
BssAI	RCCGGY	3 cut(s)	278, 631, 966
BssECI	CCNNGG	7 cut(s)	165, 192, 295, 626, 1339, 1532, 2869
BssMI	GATC	8 cut(s)	252, 262, 797, 1093, 1438, 2316, 2422, 2683
BssNAI	GTATAC	2 cut(s)	767, 1887
BssNI	GRCGYC	1 cut(s)	315
BssSI	CACGAG	2 cut(s)	233, 1464
Bst1107I	GTATAC	2 cut(s)	767, 1887
Bst2BI	CACGAG	2 cut(s)	233, 1464
Bst2UI	CCWGG	9 cut(s)	1330, 1335, 1534, 1614, 1997, 2196, 2229, 2613, 2871
Bst4CI	ACNGT	8 cut(s)	697, 784, 1031, 1419, 1910, 2127, 2480, 2528
Bst6I	CTCTTC	3 cut(s)	430, 1578, 2642
BstACI	GRCGYC	1 cut(s)	315
BstAFI	CTTAAG	1 cut(s)	2381
BstAPI	GCANNNNNTGC	2 cut(s)	358, 2408
BstBAI	YACGTR	1 cut(s)	2066
BstBI	TTCGAA	1 cut(s)	245
BstC8I	GCNNGC	6 cut(s)	280, 284, 633, 1357, 2835, 2846
BstDSI	CCRYGG	1 cut(s)	295
BstEII	GGTNACC	2 cut(s)	43, 863
BstENI	CCTNNNNNAGG	1 cut(s)	2381
BstF5I	GGATG	7 cut(s)	642, 1141, 1234, 1549, 2029, 2520, 2757
BstFNI	CGCG	1 cut(s)	2699
BstHHI	GCGC	4 cut(s)	326, 495, 556, 2699
BstKTI	GATC	8 cut(s)	255, 265, 800, 1096, 1441, 2319, 2425, 2686
BstMAI	GTCTC	9 cut(s)	163, 285, 399, 671, 1626, 2257, 2456, 2732, 2868
BstMBI	GATC	8 cut(s)	252, 262, 797, 1093, 1438, 2316, 2422, 2683
BstMCI	CGRYCG	2 cut(s)	115, 632
BstNI	CCWGG	9 cut(s)	1330, 1335, 1534, 1614, 1997, 2196, 2229, 2613, 2871
BstNSI	RCATGY	4 cut(s)	1067, 2501, 2572, 2837
BstPI	GGTNACC	2 cut(s)	43, 863
BstSFI	CTRYAG	7 cut(s)	560, 1321, 1425, 2123, 2342, 2352, 2826
BstSLI	GKGCMC	2 cut(s)	1770, 1794
BstUI	CGCG	1 cut(s)	2699
BstV1I	GCAGC	7 cut(s)	148, 217, 298, 345, 546, 568, 1909
BstV2I	GAAGAC	1 cut(s)	436
BstX2I	RGATCY	2 cut(s)	797, 1438
BstXI	CCANNNNNNTGG	2 cut(s)	503, 1613
BstYI	RGATCY	2 cut(s)	797, 1438
BstZ17I	GTATAC	2 cut(s)	767, 1887
BstZI	CGGCCG	1 cut(s)	629
Bsu36I	CCTNAGG	2 cut(s)	152, 438
BsuI	GTATCC	3 cut(s)	685, 2063, 2875
BtgI	CCRYGG	1 cut(s)	295
BtgZI	GCGATG	2 cut(s)	259, 292
BtrI	CACGTC	1 cut(s)	175
BtsCI	GGATG	7 cut(s)	642, 1141, 1234, 1549, 2029, 2520, 2757
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	8 cut(s)	525, 1036, 1125, 1346, 1746, 2061, 2584, 2856
BveI	ACCTGC	1 cut(s)	2632
Cac8I	GCNNGC	6 cut(s)	280, 284, 633, 1357, 2835, 2846
CaiI	CAGNNNCTG	1 cut(s)	2612
CciI	TCATGA	1 cut(s)	2392
CfoI	GCGC	4 cut(s)	326, 495, 556, 2699
Cfr10I	RCCGGY	3 cut(s)	278, 631, 966
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	5 cut(s)	2060, 2094, 2114, 2387, 2770
CspAI	ACCGGT	1 cut(s)	966
CspCI	CAANNNNNGTGG	2 cut(s)	1722, 1757
CviQI	GTAC	5 cut(s)	2060, 2094, 2114, 2387, 2770
DpnI	GATC	8 cut(s)	254, 264, 799, 1095, 1440, 2318, 2424, 2685
DpnII	GATC	8 cut(s)	252, 262, 797, 1093, 1438, 2316, 2422, 2683
DraI	TTTAAA	1 cut(s)	1047
DrdI	GACNNNNNNGTC	1 cut(s)	155
DriI	GACNNNNNGTC	1 cut(s)	175
DseDI	GACNNNNNNGTC	1 cut(s)	155
EaeI	YGGCCR	2 cut(s)	400, 629
EagI	CGGCCG	1 cut(s)	629
Eam1104I	CTCTTC	3 cut(s)	430, 1578, 2642
Eam1105I	GACNNNNNGTC	1 cut(s)	175
EarI	CTCTTC	3 cut(s)	430, 1578, 2642
EciI	GGCGGA	2 cut(s)	75, 949
Ecl136II	GAGCTC	1 cut(s)	232
EclXI	CGGCCG	1 cut(s)	629
Eco147I	AGGCCT	2 cut(s)	1333, 1753
Eco24I	GRGCYC	1 cut(s)	234
Eco31I	GGTCTC	4 cut(s)	163, 285, 671, 2456
Eco47I	GGWCC	6 cut(s)	340, 701, 756, 1868, 2243, 2822
Eco52I	CGGCCG	1 cut(s)	629
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	2 cut(s)	516, 1455
Eco72I	CACGTG	1 cut(s)	2066
Eco81I	CCTNAGG	2 cut(s)	152, 438
Eco88I	CYCGRG	3 cut(s)	12, 164, 335
Eco91I	GGTNACC	2 cut(s)	43, 863
EcoICRI	GAGCTC	1 cut(s)	232
EcoNI	CCTNNNNNAGG	1 cut(s)	2381
EcoO109I	RGGNCCY	2 cut(s)	340, 2822
EcoO65I	GGTNACC	2 cut(s)	43, 863
EcoRII	CCWGG	9 cut(s)	1328, 1333, 1532, 1612, 1995, 2194, 2227, 2611, 2869
EcoT22I	ATGCAT	1 cut(s)	1018
EcoT38I	GRGCYC	1 cut(s)	234
FalI	AAGNNNNNCTT	2 cut(s)	787, 819
FaqI	GGGAC	4 cut(s)	155, 326, 1430, 2186
FauI	CCCGC	3 cut(s)	132, 1468, 1788
FauNDI	CATATG	3 cut(s)	1018, 1608, 2487
FblI	GTMKAC	5 cut(s)	433, 766, 1391, 1886, 2122
FokI	GGATG	7 cut(s)	629, 1148, 1241, 1536, 2016, 2527, 2764
FriOI	GRGCYC	1 cut(s)	234
FspBI	CTAG	8 cut(s)	24, 1091, 1182, 1275, 1314, 1625, 1956, 2256
GlaI	GCGC	4 cut(s)	325, 494, 555, 2698
GsuI	CTGGAG	2 cut(s)	1740, 2892
HapII	CCGG	8 cut(s)	41, 279, 632, 868, 967, 2246, 2455, 2849
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	4 cut(s)	326, 495, 556, 2699
Hin1I	GRCGYC	1 cut(s)	315
Hin6I	GCGC	4 cut(s)	324, 493, 554, 2697
HinP1I	GCGC	4 cut(s)	324, 493, 554, 2697
HincII	GTYRAC	2 cut(s)	1644, 1953
HindII	GTYRAC	2 cut(s)	1644, 1953
HpaII	CCGG	8 cut(s)	41, 279, 632, 868, 967, 2246, 2455, 2849
HphI	GGTGA	6 cut(s)	37, 461, 798, 875, 1643, 1769
Hpy188III	TCNNGA	9 cut(s)	12, 335, 950, 1091, 1314, 1526, 1680, 2039, 2393
Hpy99I	CGWCG	3 cut(s)	149, 176, 317
HpyAV	CCTTC	9 cut(s)	372, 540, 548, 819, 1305, 1320, 1419, 2387, 2885
HpyCH4III	ACNGT	8 cut(s)	697, 784, 1031, 1419, 1910, 2127, 2480, 2528
HpyCH4IV	ACGT	5 cut(s)	174, 667, 1764, 2065, 2389
HpySE526I	ACGT	5 cut(s)	174, 667, 1764, 2065, 2389
Hsp92I	GRCGYC	1 cut(s)	315
HspAI	GCGC	4 cut(s)	324, 493, 554, 2697
KpnI	GGTACC	1 cut(s)	2063
KroI	GCCGGC	2 cut(s)	278, 631
KroNI	GCCGGC	2 cut(s)	280, 633
Kzo9I	GATC	8 cut(s)	252, 262, 797, 1093, 1438, 2316, 2422, 2683
LmnI	GCTCC	6 cut(s)	4, 73, 919, 1364, 2041, 2473
Lsp1109I	GCAGC	7 cut(s)	148, 217, 298, 345, 546, 568, 1909
LweI	GCATC	7 cut(s)	207, 315, 623, 651, 1003, 1639, 2593
MaeI	CTAG	8 cut(s)	24, 1091, 1182, 1275, 1314, 1625, 1956, 2256
MaeII	ACGT	5 cut(s)	174, 667, 1764, 2065, 2389
MaeIII	GTNAC	5 cut(s)	43, 863, 2500, 2557, 2811
MalI	GATC	8 cut(s)	254, 264, 799, 1095, 1440, 2318, 2424, 2685
MboI	GATC	8 cut(s)	252, 262, 797, 1093, 1438, 2316, 2422, 2683
MboII	GAAGA	9 cut(s)	417, 436, 768, 792, 795, 1448, 1565, 2659, 2669
MflI	RGATCY	2 cut(s)	797, 1438
MhlI	GDGCHC	8 cut(s)	191, 234, 354, 1179, 1272, 1770, 1794, 2478
MlyI	GAGTC	8 cut(s)	94, 742, 1564, 1709, 1831, 1965, 2168, 2861
MmeI	TCCRAC	4 cut(s)	654, 679, 1884, 2041
Mph1103I	ATGCAT	1 cut(s)	1018
MreI	CGCCGGCG	1 cut(s)	278
MroNI	GCCGGC	2 cut(s)	278, 631
MroXI	GAANNNNTTC	1 cut(s)	1687
MseI	TTAA	9 cut(s)	713, 971, 1046, 1578, 1707, 1748, 1983, 2367, 2382
MspA1I	CMGCKG	2 cut(s)	139, 559
MspCI	CTTAAG	1 cut(s)	2381
MspI	CCGG	8 cut(s)	41, 279, 632, 868, 967, 2246, 2455, 2849
Mva1269I	GAATGC	5 cut(s)	481, 1357, 1561, 1969, 2782
MvaI	CCWGG	9 cut(s)	1330, 1335, 1534, 1614, 1997, 2196, 2229, 2613, 2871
MvnI	CGCG	1 cut(s)	2699
NaeI	GCCGGC	2 cut(s)	280, 633
NciI	CCSGG	1 cut(s)	869
NdeI	CATATG	3 cut(s)	1018, 1608, 2487
NdeII	GATC	8 cut(s)	252, 262, 797, 1093, 1438, 2316, 2422, 2683
NgoMIV	GCCGGC	2 cut(s)	278, 631
NlaIV	GGNNCC	6 cut(s)	342, 757, 921, 2043, 2061, 2200
NmeAIII	GCCGAG	3 cut(s)	210, 428, 607
NmuCI	GTSAC	4 cut(s)	43, 863, 2500, 2811
NsiI	ATGCAT	1 cut(s)	1018
NspI	RCATGY	4 cut(s)	1067, 2501, 2572, 2837
NspV	TTCGAA	1 cut(s)	245
PaeI	GCATGC	1 cut(s)	2837
PaeR7I	CTCGAG	1 cut(s)	335
PagI	TCATGA	1 cut(s)	2392
PceI	AGGCCT	2 cut(s)	1333, 1753
PctI	GAATGC	5 cut(s)	481, 1357, 1561, 1969, 2782
PdiI	GCCGGC	2 cut(s)	280, 633
PdmI	GAANNNNTTC	1 cut(s)	1687
PfeI	GAWTC	8 cut(s)	331, 620, 1186, 1367, 1482, 1861, 2348, 2396
PflFI	GACNNNGTC	1 cut(s)	410
PinAI	ACCGGT	1 cut(s)	966
PleI	GAGTC	8 cut(s)	94, 741, 1564, 1709, 1830, 1965, 2168, 2860
PmaCI	CACGTG	1 cut(s)	2066
PmlI	CACGTG	1 cut(s)	2066
PpsI	GAGTC	8 cut(s)	94, 741, 1564, 1709, 1830, 1965, 2168, 2860
Ppu21I	YACGTR	1 cut(s)	2066
PpuMI	RGGWCCY	2 cut(s)	340, 2822
Psp124BI	GAGCTC	1 cut(s)	234
Psp5II	RGGWCCY	2 cut(s)	340, 2822
Psp6I	CCWGG	9 cut(s)	1328, 1333, 1532, 1612, 1995, 2194, 2227, 2611, 2869
PspCI	CACGTG	1 cut(s)	2066
PspEI	GGTNACC	2 cut(s)	43, 863
PspGI	CCWGG	9 cut(s)	1328, 1333, 1532, 1612, 1995, 2194, 2227, 2611, 2869
PspN4I	GGNNCC	6 cut(s)	342, 757, 921, 2043, 2061, 2200
PspPPI	RGGWCCY	2 cut(s)	340, 2822
PstI	CTGCAG	2 cut(s)	564, 2346
PstNI	CAGNNNCTG	1 cut(s)	2612
PsuI	RGATCY	2 cut(s)	797, 1438
PsyI	GACNNNGTC	1 cut(s)	410
PvuII	CAGCTG	1 cut(s)	559
RsaI	GTAC	5 cut(s)	2061, 2095, 2115, 2388, 2771
RsaNI	GTAC	5 cut(s)	2060, 2094, 2114, 2387, 2770
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	9 cut(s)	713, 971, 1046, 1578, 1707, 1748, 1983, 2367, 2382
Sau3AI	GATC	8 cut(s)	252, 262, 797, 1093, 1438, 2316, 2422, 2683
SchI	GAGTC	8 cut(s)	94, 742, 1564, 1709, 1831, 1965, 2168, 2861
SduI	GDGCHC	8 cut(s)	191, 234, 354, 1179, 1272, 1770, 1794, 2478
SfaNI	GCATC	7 cut(s)	207, 315, 623, 651, 1003, 1639, 2593
SfcI	CTRYAG	7 cut(s)	560, 1321, 1425, 2123, 2342, 2352, 2826
Sfr274I	CTCGAG	1 cut(s)	335
SfuI	TTCGAA	1 cut(s)	245
SgrAI	CRCCGGYG	1 cut(s)	278
SinI	GGWCC	6 cut(s)	340, 701, 756, 1868, 2243, 2822
SlaI	CTCGAG	1 cut(s)	335
SmlI	CTYRAG	5 cut(s)	131, 335, 1524, 2307, 2381
SmoI	CTYRAG	5 cut(s)	131, 335, 1524, 2307, 2381
SpeI	ACTAGT	1 cut(s)	1955
SphI	GCATGC	1 cut(s)	2837
SseBI	AGGCCT	2 cut(s)	1333, 1753
SspI	AATATT	2 cut(s)	662, 817
SspMI	CTAG	8 cut(s)	24, 1091, 1182, 1275, 1314, 1625, 1956, 2256
SstI	GAGCTC	1 cut(s)	234
StuI	AGGCCT	2 cut(s)	1333, 1753
TaaI	ACNGT	8 cut(s)	697, 784, 1031, 1419, 1910, 2127, 2480, 2528
TaiI	ACGT	5 cut(s)	177, 670, 1767, 2068, 2392
TaqI	TCGA	4 cut(s)	111, 245, 336, 1848
TatI	WGTACW	1 cut(s)	2769
TauI	GCSGC	6 cut(s)	79, 82, 91, 184, 1075, 1786
TfiI	GAWTC	8 cut(s)	331, 620, 1186, 1367, 1482, 1861, 2348, 2396
Tru1I	TTAA	9 cut(s)	713, 971, 1046, 1578, 1707, 1748, 1983, 2367, 2382
Tru9I	TTAA	9 cut(s)	713, 971, 1046, 1578, 1707, 1748, 1983, 2367, 2382
TscAI	CASTG	8 cut(s)	525, 1036, 1132, 1353, 1746, 2061, 2584, 2863
TseFI	GTSAC	4 cut(s)	43, 863, 2500, 2811
TseI	GCWGC	7 cut(s)	136, 205, 286, 358, 556, 559, 1897
Tsp45I	GTSAC	4 cut(s)	43, 863, 2500, 2811
TspRI	CASTG	8 cut(s)	525, 1036, 1132, 1353, 1746, 2061, 2584, 2863
Tth111I	GACNNNGTC	1 cut(s)	410
Vha464I	CTTAAG	1 cut(s)	2381
VneI	GTGCAC	2 cut(s)	1766, 1790
VpaK11BI	GGWCC	6 cut(s)	340, 701, 756, 1868, 2243, 2822
XagI	CCTNNNNNAGG	1 cut(s)	2381
XapI	RAATTY	4 cut(s)	844, 1600, 1840, 2689
XbaI	TCTAGA	2 cut(s)	1090, 1313
XceI	RCATGY	4 cut(s)	1067, 2501, 2572, 2837
XhoI	CTCGAG	1 cut(s)	335
XmiI	GTMKAC	5 cut(s)	433, 766, 1391, 1886, 2122
XmnI	GAANNNNTTC	1 cut(s)	1687
XspI	CTAG	8 cut(s)	24, 1091, 1182, 1275, 1314, 1625, 1956, 2256
Zsp2I	ATGCAT	1 cut(s)	1018

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.