Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0009992

Physical Location & Seq

Genomic Coordinates Forward (+)

2274775 .. 2280986

Gene Structure 6212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG032700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2760 bp

ATGGAGCTTTCCCGAGAAAACCCTAGACCCCTCGCTTTTCCGGCCACCAAGCCCATGCCCGACCTCGCTCCCAAGCCGCCGCCGACGCCGACGCCGACTCCGACTCCGACTCCGATAATCGACCGCTACAAAGTCCTGCTCAAGCAGCGGGACGACGACCTCAGGGTCTCGCCCGAGGACGACGTGTCGCCGCCGAGCACCGAGGAGATTGTGCAGCTCTACGAGATGCTCTTGTCCGAGCTCGTGTTTAATTCGAAGCCGATCATTACCGATCTCACTATCATCGCCGGCGAGCAGCGAGACCACGGCAAGGGCATCGCCGACGCCATCTGCGCTCGGATTCTCGAGGTCCCAGTTGAGCACAAGCTGCCTTCGTTATATCTTTTAGACAGTATTGTAAAGAACATTGGCCGAGACTATGTCAGATACTTCTCTTCCCGTCTACCTGAGGTCTTCTGTGAGGCATACAGGCAAGTTCACCCCAACCAGCATTCTGCCATGCGCCACCTCTTTGGCACTTGGTCGGCAGTGTTTCCACCTTCAGTCCTTCGCAGGATTGAAACGCAGCTGCAGTTTTCTCCACAGATAAACCAGCAATCATCAGGTTTACCTCCTTTGAGAGCATCTGAATCTCCTCGGCCGGCTCATGGCATCCATGTCAATCCAAAATATTTACGTCAGTTGGAGACCTCAGATGTGGATAATGTTGGACCTCAAAGATTAAGCTCAACAGGAAATATGAGTCATACAGATTTTCCTGTTGGGTCCAATCGTATACAGCCATCTTCAACTGTCAGACTTGCAAGATCTTCTTCACCTTCAAATATTGGCCTCGATGAATATGAAGTAGAAAATTCTCCTAAAAGGTTTGGTGACCGGGCTTCTCCATCTAATTCTGTGTATGATTATAGAGCAATCAGAGATGAGGAGCCAAATGAAAGGCGGAGAAAACATTATCTTGATGGTAGTCAGAACCGGTTAAATAATGGACTTGAACATCAAAGACCAAGAGCTTTGATTGATGCATATGGAAAAGACAGTGGGGATAGAAGTTTAAATGATAAGCCTTTGCATGTTGGGCGGCTTGGTGTAAATGGTCTAGATCACAAAGCAACTTCAATGTCATGGCAGAATACTGAGGAGGATGAGTTTGATTGGAAATCTGTCGGCCCACCTATAACCGAGCACACTAGGAGTAATGATTTCTTGCCTTCAAATATACCACCTTCTAGAAGCTACAGGGCCAGGCCTGGCCTCGGAACACTGAATGCAAGCTCCTTAGATTCTGATATTGGGAGTAGTTGGTCTACTCAGGCATACCTACCTTCCGAACAGTCCTCTGTAGTTGCTGAAGATCCAGTCCCCCCGCTTTCTTTTACTCGTGGATTCGCGGGTAGATTCCAGTCCGAGATAAATCATAATCAGGGTTCTCGCCACCCTCAAGAACCCTGGAATATGCCTTTCCATCCCTCTCAGCATTCACAGACTCTTCTTAATACCAAAGAAATAGGTAGAAATTTCCATATGCCTGGTATGTCTCTAGGTGGTGAGAAAGTGTCTACTGATGCCGATGTGCGACTTCATGGGCCAACATCAAGAATGGGTTCTGGTGCTGACTTTGTTAATGCTGACTCTCGGTTAGTTATACCAATGTCAGTGGGTTTAAGGCCTCCAGTAAACGTGCACAATTCTCACCCGCCGCCTGTGCACCCTATTTTTCCATTGCAAAACCAGAGGAGTCAGTATGGTTTCATAAATTCTGTCGATACTGCTAAGAATCAAGGTCCATATAAGTCTATGTATATGCCTGAGCAGCAGTTGGACGGTTATGAAAACAAGGATTTGGGGTTGGCAAAGCTAAGTCAGTTGACTAGTCAGAATGCCAGACTCCTACCTGTTAATCAGCGAAACCAGGCTCAGGTCAGTCCTTTCCAACCACAATTTCATCCACATCAGGAGCCACCTTATTCAGTGGTACCGCGTGGATACAATTTGCAAGGGCAGGGTGGTACTGGTATCGCAAATCCTGTACCTCGTCTACAGTTGGGCTTACCAACTCACTATACCCCAAACGCTAATTTGCGTGGGGACTCCTTGCCACCTCTACCACCTGGCCCCCCTCCTCCCATGCAAGGTGTATTTCCTGGTCAAAAGGCTGGTCCGGTAGTCTCTAGCAACCAGCAAGGGAGTTCATATACTGGTTTGATTAGTTCTCTCATGGCTCAAGGTGTGATCTCATTGACAAATCCAAGTGGACTGCAGGATTCTGTAGGAGTTGAGTTCAATGCAGACCTTCTTAAGGCACGCCGGAGTCCACTGATGTATCCCCTGGAGGTTTTGGACAAGATGAAGGGGGAACTATTGAAGAGGGTAGTCAAAGAAAACGTTTGCGGAGTTGACATAGTTAGGAGGACTTCCATGTCCACTTATTGTTGGAGTAGCAGCACATTGGCTTTCAAGCCAGCTTGTACATGTATAGTAGAACTTGTACCATGGAAACTCATGGAATATAATGATAAACCCATAGTGCTCGAGATTGAGGGCTGTCTACCAAGCAATGAGTTAGGACACCATGGAAGAGTTGGCTTAATTACTAAGGTAGGAATGATATTTACTGGAATTAAGCATTGTTTTGCCCAAAGAGGGAACATCTACAAATCTACAATAGATTTTGAATCCAACAAAAATCAAACAAAATTAGAAGATTGTGGCACTGATTTTGGATTCAGGCAACTTCTGAATGTCTTGGATAAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

919

Amino Acids

101.99

Weight (kDa)

7.7

Isoelectric Point (pI)

56.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CID	PF04818	77 - 183	3.4e-12	CID domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04885
fragaria_vesca	FvH4_3g02510 FvH4_3g02510 FvH4_3g02510 FvH4_3g02510
malus_domestica	MD05G1342300.v1.1 MD10G1315900.v1.1
prunus_persica	Prupe.4G024700_v2.0.a1
pyrus_communis	pycom05g31160 pycom10g26810
rosa_chinensis	RchiOBHm_Chr5g0003821
rosa_laevigata	RLG00000031178
rosa_multiflora	Rmu_sc0004212.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072170
rosa_rugosa	Rorug04G0406900 Rorug04G0407000
rosa_samantha	Rh5AG034400 Rh5BG032700 Rh5CG036800 Rh5DG033100
rosa_wichuraiana	Rw5G003150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	164, 2419
Acc65I	GGTACC	1 cut(s)	1975
AccB1I	GGYRCC	1 cut(s)	1975
AccI	GTMKAC	6 cut(s)	442, 775, 1307, 1559, 2038, 2548
AccII	CGCG	2 cut(s)	1391, 1981
AclI	AACGTT	1 cut(s)	2385
AclWI	GGATC	1 cut(s)	1349
AcoI	YGGCCR	3 cut(s)	42, 409, 638
AcsI	RAATTY	3 cut(s)	853, 1516, 1756
AcuI	CTGAAG	2 cut(s)	525, 1371
AcyI	GRCGYC	3 cut(s)	86, 92, 324
AfaI	GTAC	5 cut(s)	1977, 2011, 2031, 2470, 2490
AfiI	CCNNNNNNNGG	7 cut(s)	310, 647, 1256, 1918, 2132, 2299, 2643
AflII	CTTAAG	1 cut(s)	2297
AflIII	ACRYGT	2 cut(s)	183, 2471
AgeI	ACCGGT	1 cut(s)	975
AhdI	GACNNNNNGTC	1 cut(s)	184
AhlI	ACTAGT	1 cut(s)	1871
AjiI	CACGTC	1 cut(s)	184
AjnI	CCWGG	8 cut(s)	1244, 1249, 1448, 1528, 1911, 2110, 2143, 2328
AjuI	GAANNNNNNNTTGG	2 cut(s)	1926, 1958
Alw21I	GWGCWC	7 cut(s)	200, 243, 363, 1188, 1686, 1710, 2532
Alw26I	GTCTC	6 cut(s)	172, 294, 408, 680, 1542, 2173
Alw44I	GTGCAC	2 cut(s)	1682, 1706
AlwI	GGATC	1 cut(s)	1349
Ama87I	CYCGRG	4 cut(s)	12, 173, 344, 2531
ApaLI	GTGCAC	2 cut(s)	1682, 1706
ApeKI	GCWGC	8 cut(s)	145, 214, 295, 367, 565, 568, 1813, 2442
ApoI	RAATTY	3 cut(s)	853, 1516, 1756
ArsI	GACNNNNNNTTYG	2 cut(s)	2143, 2175
AsiGI	ACCGGT	1 cut(s)	975
Asp700I	GAANNNNTTC	1 cut(s)	1603
Asp718I	GGTACC	1 cut(s)	1975
AspLEI	GCGC	2 cut(s)	335, 504
AspS9I	GGNCC	9 cut(s)	349, 710, 765, 1169, 1242, 1586, 1784, 2114, 2159
AsuC2I	CCSGG	1 cut(s)	878
AsuHPI	GGTGA	5 cut(s)	470, 807, 884, 1559, 1685
AsuII	TTCGAA	1 cut(s)	254
AvaI	CYCGRG	4 cut(s)	12, 173, 344, 2531
AvaII	GGWCC	5 cut(s)	349, 710, 765, 1784, 2159
AxyI	CCTNAGG	2 cut(s)	161, 447
BaeGI	GKGCMC	2 cut(s)	1686, 1710
BaeI	ACNNNNGTAYC	2 cut(s)	2306, 2339
BanI	GGYRCC	1 cut(s)	1975
BanII	GRGCYC	1 cut(s)	243
BauI	CACGAG	2 cut(s)	242, 1380
BbsI	GAAGAC	1 cut(s)	445
Bbv12I	GWGCWC	7 cut(s)	200, 243, 363, 1188, 1686, 1710, 2532
BbvI	GCAGC	8 cut(s)	157, 226, 307, 354, 555, 577, 1825, 2454
BccI	CCATC	5 cut(s)	335, 790, 895, 956, 1473
BceAI	ACGGC	1 cut(s)	322
BcgI	CGANNNNNNTGC	2 cut(s)	298, 332
BciT130I	CCWGG	8 cut(s)	1246, 1251, 1450, 1530, 1913, 2112, 2145, 2330
BciVI	GTATCC	2 cut(s)	1979, 2334
BcnI	CCSGG	1 cut(s)	878
BcoDI	GTCTC	6 cut(s)	172, 294, 408, 680, 1542, 2173
BcuI	ACTAGT	1 cut(s)	1871
BfaI	CTAG	7 cut(s)	24, 1100, 1191, 1230, 1541, 1872, 2172
BfmI	CTRYAG	6 cut(s)	569, 1237, 1341, 2039, 2258, 2268
BfrI	CTTAAG	1 cut(s)	2297
BfuI	GTATCC	2 cut(s)	1979, 2334
BglII	AGATCT	1 cut(s)	806
Bme1390I	CCNGG	9 cut(s)	878, 1246, 1251, 1450, 1530, 1913, 2112, 2145, 2330
Bme18I	GGWCC	5 cut(s)	349, 710, 765, 1784, 2159
BmeRI	GACNNNNNGTC	1 cut(s)	184
BmeT110I	CYCGRG	4 cut(s)	12, 173, 344, 2531
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	9 cut(s)	349, 710, 765, 1169, 1242, 1586, 1784, 2114, 2159
BmiI	GGNNCC	6 cut(s)	351, 766, 930, 1959, 1977, 2116
BmrFI	CCNGG	9 cut(s)	878, 1246, 1251, 1450, 1530, 1913, 2112, 2145, 2330
BmrI	ACTGGG	1 cut(s)	347
BmsI	GCATC	6 cut(s)	216, 324, 632, 660, 1012, 1555
BmuI	ACTGGG	1 cut(s)	347
BpiI	GAAGAC	1 cut(s)	445
BpmI	CTGGAG	2 cut(s)	1656, 2351
Bpu10I	CCTNAGC	2 cut(s)	1809, 1917
Bpu14I	TTCGAA	1 cut(s)	254
BpuEI	CTTGAG	3 cut(s)	125, 1425, 2208
BpuMI	CCSGG	1 cut(s)	878
BsaHI	GRCGYC	3 cut(s)	86, 92, 324
BsaI	GGTCTC	3 cut(s)	172, 294, 680
BsaJI	CCNNGG	9 cut(s)	174, 201, 304, 635, 1255, 1448, 2328, 2492, 2572
BsaWI	WCCGGW	2 cut(s)	975, 2161
BsaXI	ACNNNNNCTCC	8 cut(s)	82, 88, 94, 112, 118, 124, 1133, 1163
Bsc4I	CCNNNNNNNGG	7 cut(s)	310, 647, 1256, 1918, 2132, 2299, 2643
Bse118I	RCCGGY	3 cut(s)	287, 640, 975
Bse1I	ACTGG	7 cut(s)	353, 1358, 1402, 1673, 2017, 2203, 2620
Bse21I	CCTNAGG	2 cut(s)	161, 447
Bse3DI	GCAATG	2 cut(s)	1721, 2563
BseBI	CCWGG	8 cut(s)	1246, 1251, 1450, 1530, 1913, 2112, 2145, 2330
BseDI	CCNNGG	9 cut(s)	174, 201, 304, 635, 1255, 1448, 2328, 2492, 2572
BseGI	GGATG	4 cut(s)	651, 1150, 1465, 1945
BseLI	CCNNNNNNNGG	7 cut(s)	310, 647, 1256, 1918, 2132, 2299, 2643
BseMI	GCAATG	2 cut(s)	1721, 2563
BseMII	CTCAG	8 cut(s)	175, 438, 705, 1128, 1325, 1487, 1800, 1931
BseNI	ACTGG	7 cut(s)	353, 1358, 1402, 1673, 2017, 2203, 2620
BseRI	GAGGAG	6 cut(s)	218, 624, 941, 1154, 1750, 2112
BseSI	GKGCMC	2 cut(s)	1686, 1710
BseX3I	CGGCCG	1 cut(s)	638
BseXI	GCAGC	8 cut(s)	157, 226, 307, 354, 555, 577, 1825, 2454
BsgI	GTGCAG	1 cut(s)	233
Bsh1236I	CGCG	2 cut(s)	1391, 1981
Bsh1285I	CGRYCG	2 cut(s)	124, 641
BshNI	GGYRCC	1 cut(s)	1975
BshTI	ACCGGT	1 cut(s)	975
BsiEI	CGRYCG	2 cut(s)	124, 641
BsiHKAI	GWGCWC	7 cut(s)	200, 243, 363, 1188, 1686, 1710, 2532
BsiHKCI	CYCGRG	4 cut(s)	12, 173, 344, 2531
BsiSI	CCGG	7 cut(s)	41, 288, 641, 877, 976, 2162, 2308
BslFI	GGGAC	4 cut(s)	164, 335, 1346, 2102
BslI	CCNNNNNNNGG	7 cut(s)	310, 647, 1256, 1918, 2132, 2299, 2643
BsmAI	GTCTC	6 cut(s)	172, 294, 408, 680, 1542, 2173
BsmFI	GGGAC	4 cut(s)	164, 335, 1346, 2102
BsmI	GAATGC	4 cut(s)	490, 1273, 1477, 1885
Bso31I	GGTCTC	3 cut(s)	172, 294, 680
BsoBI	CYCGRG	4 cut(s)	12, 173, 344, 2531
Bsp119I	TTCGAA	1 cut(s)	254
Bsp1286I	GDGCHC	7 cut(s)	200, 243, 363, 1188, 1686, 1710, 2532
Bsp1407I	TGTACA	1 cut(s)	2468
Bsp143I	GATC	6 cut(s)	261, 271, 806, 1102, 1354, 2232
Bsp19I	CCATGG	2 cut(s)	2492, 2572
BspCNI	CTCAG	8 cut(s)	174, 439, 704, 1129, 1324, 1486, 1801, 1930
BspFNI	CGCG	2 cut(s)	1391, 1981
BspLI	GGNNCC	6 cut(s)	351, 766, 930, 1959, 1977, 2116
BspMAI	CTGCAG	2 cut(s)	573, 2262
BspPI	GGATC	1 cut(s)	1349
BspT104I	TTCGAA	1 cut(s)	254
BspT107I	GGYRCC	1 cut(s)	1975
BspTI	CTTAAG	1 cut(s)	2297
BspTNI	GGTCTC	3 cut(s)	172, 294, 680
BsrDI	GCAATG	2 cut(s)	1721, 2563
BsrFI	RCCGGY	3 cut(s)	287, 640, 975
BsrGI	TGTACA	1 cut(s)	2468
BsrI	ACTGG	7 cut(s)	353, 1358, 1402, 1673, 2017, 2203, 2620
BssAI	RCCGGY	3 cut(s)	287, 640, 975
BssECI	CCNNGG	9 cut(s)	174, 201, 304, 635, 1255, 1448, 2328, 2492, 2572
BssMI	GATC	6 cut(s)	261, 271, 806, 1102, 1354, 2232
BssNAI	GTATAC	1 cut(s)	776
BssNI	GRCGYC	3 cut(s)	86, 92, 324
BssSI	CACGAG	2 cut(s)	242, 1380
BssT1I	CCWWGG	2 cut(s)	2492, 2572
Bst1107I	GTATAC	1 cut(s)	776
Bst2BI	CACGAG	2 cut(s)	242, 1380
Bst2UI	CCWGG	8 cut(s)	1246, 1251, 1450, 1530, 1913, 2112, 2145, 2330
Bst4CI	ACNGT	6 cut(s)	392, 793, 1040, 1335, 1826, 2043
Bst6I	CTCTTC	4 cut(s)	439, 1494, 2360, 2572
BstACI	GRCGYC	3 cut(s)	86, 92, 324
BstAFI	CTTAAG	1 cut(s)	2297
BstAPI	GCANNNNNTGC	1 cut(s)	367
BstAUI	TGTACA	1 cut(s)	2468
BstBI	TTCGAA	1 cut(s)	254
BstC8I	GCNNGC	6 cut(s)	289, 293, 642, 1273, 2305, 2463
BstDSI	CCRYGG	3 cut(s)	304, 2492, 2572
BstEII	GGTNACC	1 cut(s)	872
BstENI	CCTNNNNNAGG	1 cut(s)	2297
BstF5I	GGATG	4 cut(s)	651, 1150, 1465, 1945
BstFNI	CGCG	2 cut(s)	1391, 1981
BstHHI	GCGC	2 cut(s)	335, 504
BstKTI	GATC	6 cut(s)	264, 274, 809, 1105, 1357, 2235
BstMAI	GTCTC	6 cut(s)	172, 294, 408, 680, 1542, 2173
BstMBI	GATC	6 cut(s)	261, 271, 806, 1102, 1354, 2232
BstMCI	CGRYCG	2 cut(s)	124, 641
BstMWI	GCNNNNNNNGC	8 cut(s)	41, 85, 145, 332, 367, 1078, 1705, 1813
BstNI	CCWGG	8 cut(s)	1246, 1251, 1450, 1530, 1913, 2112, 2145, 2330
BstNSI	RCATGY	2 cut(s)	1076, 2475
BstPI	GGTNACC	1 cut(s)	872
BstSCI	CCNGG	9 cut(s)	876, 1244, 1249, 1448, 1528, 1911, 2110, 2143, 2328
BstSFI	CTRYAG	6 cut(s)	569, 1237, 1341, 2039, 2258, 2268
BstSLI	GKGCMC	2 cut(s)	1686, 1710
BstUI	CGCG	2 cut(s)	1391, 1981
BstV1I	GCAGC	8 cut(s)	157, 226, 307, 354, 555, 577, 1825, 2454
BstV2I	GAAGAC	1 cut(s)	445
BstX2I	RGATCY	2 cut(s)	806, 1354
BstXI	CCANNNNNNTGG	2 cut(s)	512, 1529
BstYI	RGATCY	2 cut(s)	806, 1354
BstZ17I	GTATAC	1 cut(s)	776
BstZI	CGGCCG	1 cut(s)	638
Bsu36I	CCTNAGG	2 cut(s)	161, 447
BsuI	GTATCC	2 cut(s)	1979, 2334
BtgI	CCRYGG	3 cut(s)	304, 2492, 2572
BtgZI	GCGATG	2 cut(s)	268, 301
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	4 cut(s)	651, 1150, 1465, 1945
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	7 cut(s)	534, 1045, 1262, 1662, 1977, 2315, 2712
Cac8I	GCNNGC	6 cut(s)	289, 293, 642, 1273, 2305, 2463
CfoI	GCGC	2 cut(s)	335, 504
Cfr10I	RCCGGY	3 cut(s)	287, 640, 975
Cfr13I	GGNCC	9 cut(s)	349, 710, 765, 1169, 1242, 1586, 1784, 2114, 2159
CseI	GACGC	3 cut(s)	94, 100, 332
Csp6I	GTAC	5 cut(s)	1976, 2010, 2030, 2469, 2489
CspAI	ACCGGT	1 cut(s)	975
CspCI	CAANNNNNGTGG	2 cut(s)	1638, 1673
CviQI	GTAC	5 cut(s)	1976, 2010, 2030, 2469, 2489
DpnI	GATC	6 cut(s)	263, 273, 808, 1104, 1356, 2234
DpnII	GATC	6 cut(s)	261, 271, 806, 1102, 1354, 2232
DraI	TTTAAA	1 cut(s)	1056
DrdI	GACNNNNNNGTC	2 cut(s)	164, 2419
DriI	GACNNNNNGTC	1 cut(s)	184
DseDI	GACNNNNNNGTC	2 cut(s)	164, 2419
EaeI	YGGCCR	3 cut(s)	42, 409, 638
EagI	CGGCCG	1 cut(s)	638
Eam1104I	CTCTTC	4 cut(s)	439, 1494, 2360, 2572
Eam1105I	GACNNNNNGTC	1 cut(s)	184
EarI	CTCTTC	4 cut(s)	439, 1494, 2360, 2572
EciI	GGCGGA	1 cut(s)	958
Ecl136II	GAGCTC	1 cut(s)	241
EclXI	CGGCCG	1 cut(s)	638
Eco130I	CCWWGG	2 cut(s)	2492, 2572
Eco147I	AGGCCT	2 cut(s)	1249, 1669
Eco24I	GRGCYC	1 cut(s)	243
Eco31I	GGTCTC	3 cut(s)	172, 294, 680
Eco47I	GGWCC	5 cut(s)	349, 710, 765, 1784, 2159
Eco52I	CGGCCG	1 cut(s)	638
Eco53kI	GAGCTC	1 cut(s)	241
Eco57I	CTGAAG	2 cut(s)	525, 1371
Eco81I	CCTNAGG	2 cut(s)	161, 447
Eco88I	CYCGRG	4 cut(s)	12, 173, 344, 2531
Eco91I	GGTNACC	1 cut(s)	872
EcoICRI	GAGCTC	1 cut(s)	241
EcoNI	CCTNNNNNAGG	1 cut(s)	2297
EcoO109I	RGGNCCY	1 cut(s)	349
EcoO65I	GGTNACC	1 cut(s)	872
EcoRII	CCWGG	8 cut(s)	1244, 1249, 1448, 1528, 1911, 2110, 2143, 2328
EcoT14I	CCWWGG	2 cut(s)	2492, 2572
EcoT22I	ATGCAT	1 cut(s)	1027
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	2 cut(s)	2492, 2572
FalI	AAGNNNNNCTT	2 cut(s)	796, 828
FaqI	GGGAC	4 cut(s)	164, 335, 1346, 2102
FauI	CCCGC	4 cut(s)	141, 1374, 1384, 1704
FauNDI	CATATG	2 cut(s)	1027, 1524
FblI	GTMKAC	6 cut(s)	442, 775, 1307, 1559, 2038, 2548
FokI	GGATG	4 cut(s)	638, 1157, 1452, 1932
FriOI	GRGCYC	1 cut(s)	243
FspBI	CTAG	7 cut(s)	24, 1100, 1191, 1230, 1541, 1872, 2172
GlaI	GCGC	2 cut(s)	334, 503
GsuI	CTGGAG	2 cut(s)	1656, 2351
HapII	CCGG	7 cut(s)	41, 288, 641, 877, 976, 2162, 2308
HgaI	GACGC	3 cut(s)	94, 100, 332
HhaI	GCGC	2 cut(s)	335, 504
Hin1I	GRCGYC	3 cut(s)	86, 92, 324
Hin6I	GCGC	2 cut(s)	333, 502
HinP1I	GCGC	2 cut(s)	333, 502
HincII	GTYRAC	2 cut(s)	1869, 2398
HindII	GTYRAC	2 cut(s)	1869, 2398
HpaII	CCGG	7 cut(s)	41, 288, 641, 877, 976, 2162, 2308
HphI	GGTGA	5 cut(s)	470, 807, 884, 1559, 1685
Hpy188III	TCNNGA	9 cut(s)	12, 344, 959, 1100, 1230, 1442, 1596, 1955, 2533
Hpy99I	CGWCG	5 cut(s)	88, 94, 158, 185, 326
HpyAV	CCTTC	9 cut(s)	381, 549, 557, 828, 1221, 1236, 1335, 2303, 2344
HpyCH4III	ACNGT	6 cut(s)	392, 793, 1040, 1335, 1826, 2043
HpyCH4IV	ACGT	4 cut(s)	183, 676, 1680, 2385
HpyF10VI	GCNNNNNNNGC	8 cut(s)	41, 85, 145, 332, 367, 1078, 1705, 1813
HpySE526I	ACGT	4 cut(s)	183, 676, 1680, 2385
Hsp92I	GRCGYC	3 cut(s)	86, 92, 324
HspAI	GCGC	2 cut(s)	333, 502
KpnI	GGTACC	1 cut(s)	1979
KroI	GCCGGC	2 cut(s)	287, 640
KroNI	GCCGGC	2 cut(s)	289, 642
Kzo9I	GATC	6 cut(s)	261, 271, 806, 1102, 1354, 2232
LmnI	GCTCC	5 cut(s)	4, 73, 928, 1280, 1957
Lsp1109I	GCAGC	8 cut(s)	157, 226, 307, 354, 555, 577, 1825, 2454
LweI	GCATC	6 cut(s)	216, 324, 632, 660, 1012, 1555
MaeI	CTAG	7 cut(s)	24, 1100, 1191, 1230, 1541, 1872, 2172
MaeII	ACGT	4 cut(s)	183, 676, 1680, 2385
MaeIII	GTNAC	1 cut(s)	872
MalI	GATC	6 cut(s)	263, 273, 808, 1104, 1356, 2234
MboI	GATC	6 cut(s)	261, 271, 806, 1102, 1354, 2232
MflI	RGATCY	2 cut(s)	806, 1354
MhlI	GDGCHC	7 cut(s)	200, 243, 363, 1188, 1686, 1710, 2532
MmeI	TCCRAC	8 cut(s)	125, 131, 663, 688, 1800, 1957, 2414, 2703
Mph1103I	ATGCAT	1 cut(s)	1027
MreI	CGCCGGCG	1 cut(s)	287
MroNI	GCCGGC	2 cut(s)	287, 640
MroXI	GAANNNNTTC	1 cut(s)	1603
MspA1I	CMGCKG	2 cut(s)	148, 568
MspCI	CTTAAG	1 cut(s)	2297
MspI	CCGG	7 cut(s)	41, 288, 641, 877, 976, 2162, 2308
MspR9I	CCNGG	9 cut(s)	878, 1246, 1251, 1450, 1530, 1913, 2112, 2145, 2330
Mva1269I	GAATGC	4 cut(s)	490, 1273, 1477, 1885
MvaI	CCWGG	8 cut(s)	1246, 1251, 1450, 1530, 1913, 2112, 2145, 2330
MvnI	CGCG	2 cut(s)	1391, 1981
MwoI	GCNNNNNNNGC	8 cut(s)	41, 85, 145, 332, 367, 1078, 1705, 1813
NaeI	GCCGGC	2 cut(s)	289, 642
NciI	CCSGG	1 cut(s)	878
NcoI	CCATGG	2 cut(s)	2492, 2572
NdeI	CATATG	2 cut(s)	1027, 1524
NdeII	GATC	6 cut(s)	261, 271, 806, 1102, 1354, 2232
NgoMIV	GCCGGC	2 cut(s)	287, 640
NlaIV	GGNNCC	6 cut(s)	351, 766, 930, 1959, 1977, 2116
NmeAIII	GCCGAG	3 cut(s)	219, 437, 616
NmuCI	GTSAC	1 cut(s)	872
NsiI	ATGCAT	1 cut(s)	1027
NspI	RCATGY	2 cut(s)	1076, 2475
NspV	TTCGAA	1 cut(s)	254
PaeR7I	CTCGAG	2 cut(s)	344, 2531
PceI	AGGCCT	2 cut(s)	1249, 1669
PciI	ACATGT	1 cut(s)	2471
PcsI	WCGNNNNNNNCGW	2 cut(s)	92, 98
PctI	GAATGC	4 cut(s)	490, 1273, 1477, 1885
PdiI	GCCGGC	2 cut(s)	289, 642
PdmI	GAANNNNTTC	1 cut(s)	1603
PfeI	GAWTC	9 cut(s)	340, 629, 1283, 1386, 1398, 1777, 2264, 2675, 2724
PflFI	GACNNNGTC	1 cut(s)	419
PinAI	ACCGGT	1 cut(s)	975
PpuMI	RGGWCCY	1 cut(s)	349
PscI	ACATGT	1 cut(s)	2471
Psp124BI	GAGCTC	1 cut(s)	243
Psp1406I	AACGTT	1 cut(s)	2385
Psp5II	RGGWCCY	1 cut(s)	349
Psp6I	CCWGG	8 cut(s)	1244, 1249, 1448, 1528, 1911, 2110, 2143, 2328
PspEI	GGTNACC	1 cut(s)	872
PspGI	CCWGG	8 cut(s)	1244, 1249, 1448, 1528, 1911, 2110, 2143, 2328
PspN4I	GGNNCC	6 cut(s)	351, 766, 930, 1959, 1977, 2116
PspPI	GGNCC	9 cut(s)	349, 710, 765, 1169, 1242, 1586, 1784, 2114, 2159
PspPPI	RGGWCCY	1 cut(s)	349
PstI	CTGCAG	2 cut(s)	573, 2262
PsuI	RGATCY	2 cut(s)	806, 1354
PsyI	GACNNNGTC	1 cut(s)	419
PvuII	CAGCTG	1 cut(s)	568
RsaI	GTAC	5 cut(s)	1977, 2011, 2031, 2470, 2490
RsaNI	GTAC	5 cut(s)	1976, 2010, 2030, 2469, 2489
SacI	GAGCTC	1 cut(s)	243
Sau3AI	GATC	6 cut(s)	261, 271, 806, 1102, 1354, 2232
Sau96I	GGNCC	9 cut(s)	349, 710, 765, 1169, 1242, 1586, 1784, 2114, 2159
ScrFI	CCNGG	9 cut(s)	878, 1246, 1251, 1450, 1530, 1913, 2112, 2145, 2330
SduI	GDGCHC	7 cut(s)	200, 243, 363, 1188, 1686, 1710, 2532
SfaNI	GCATC	6 cut(s)	216, 324, 632, 660, 1012, 1555
SfcI	CTRYAG	6 cut(s)	569, 1237, 1341, 2039, 2258, 2268
Sfr274I	CTCGAG	2 cut(s)	344, 2531
SfuI	TTCGAA	1 cut(s)	254
SgrAI	CRCCGGYG	1 cut(s)	287
SinI	GGWCC	5 cut(s)	349, 710, 765, 1784, 2159
SlaI	CTCGAG	2 cut(s)	344, 2531
SmlI	CTYRAG	6 cut(s)	140, 344, 1440, 2223, 2297, 2531
SmoI	CTYRAG	6 cut(s)	140, 344, 1440, 2223, 2297, 2531
SpeI	ACTAGT	1 cut(s)	1871
SseBI	AGGCCT	2 cut(s)	1249, 1669
SspI	AATATT	2 cut(s)	671, 826
SspMI	CTAG	7 cut(s)	24, 1100, 1191, 1230, 1541, 1872, 2172
SstI	GAGCTC	1 cut(s)	243
StuI	AGGCCT	2 cut(s)	1249, 1669
StyD4I	CCNGG	9 cut(s)	876, 1244, 1249, 1448, 1528, 1911, 2110, 2143, 2328
StyI	CCWWGG	2 cut(s)	2492, 2572
TaaI	ACNGT	6 cut(s)	392, 793, 1040, 1335, 1826, 2043
TaiI	ACGT	4 cut(s)	186, 679, 1683, 2388
TaqI	TCGA	6 cut(s)	120, 254, 345, 834, 1764, 2532
TatI	WGTACW	1 cut(s)	2468
TauI	GCSGC	5 cut(s)	79, 82, 193, 1084, 1702
TfiI	GAWTC	9 cut(s)	340, 629, 1283, 1386, 1398, 1777, 2264, 2675, 2724
TscAI	CASTG	7 cut(s)	534, 1045, 1269, 1662, 1977, 2322, 2719
TseFI	GTSAC	1 cut(s)	872
TseI	GCWGC	8 cut(s)	145, 214, 295, 367, 565, 568, 1813, 2442
Tsp45I	GTSAC	1 cut(s)	872
TspDTI	ATGAA	9 cut(s)	852, 858, 951, 1571, 1741, 1845, 1934, 2181, 2363
TspRI	CASTG	7 cut(s)	534, 1045, 1269, 1662, 1977, 2322, 2719
Tth111I	GACNNNGTC	1 cut(s)	419
Vha464I	CTTAAG	1 cut(s)	2297
VneI	GTGCAC	2 cut(s)	1682, 1706
VpaK11BI	GGWCC	5 cut(s)	349, 710, 765, 1784, 2159
XagI	CCTNNNNNAGG	1 cut(s)	2297
XapI	RAATTY	3 cut(s)	853, 1516, 1756
XbaI	TCTAGA	2 cut(s)	1099, 1229
XceI	RCATGY	2 cut(s)	1076, 2475
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2579
XhoI	CTCGAG	2 cut(s)	344, 2531
XmiI	GTMKAC	6 cut(s)	442, 775, 1307, 1559, 2038, 2548
XmnI	GAANNNNTTC	1 cut(s)	1603
XspI	CTAG	7 cut(s)	24, 1100, 1191, 1230, 1541, 1872, 2172
Zsp2I	ATGCAT	1 cut(s)	1027

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.