Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009992

Physical Location & Seq

Genomic Coordinates Forward (+)

2717604 .. 2723626

Gene Structure 6023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031178

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2850 bp

ATGGAGCTTTCCCGAGAAAACCCTAGACCACTCGGTTTTCCGGCCACCAAACCCATGCCCGACCTCGCTCCCAAGCCGCCGCCGCCTCCGCCGCCGACCACGACTCCGATTATCGACCGGTACAAAGTCCTGCTCAAGCAGCGCGACGACGACCTCCGGGTCTCGCCCGAGGACGACGTGTCGCCGCCGAGCACCGAGGAGATTGTGCAGCTCTACGAGATGCTCTTGTCCGAGCTCGTGTTCAATTCGAAGCCGATCATTACCGATCTCACTATCATCGCCGGCGAGCAGCGAGACCACGGCAAGGGCATCGCCGACGCCATCTGCGCTCGGATTCTCGAGGTCCCAGTTGAGCACAAGCTGCCTTCGTTATATCTTTTAGACAGTATTGTAAAGAACATTGGCCGAGACTATGTCAGATACTTCTCTTCCCGTCTACCTGAGGTCTTCTGTGAGGCATACAGGCAAGTTCACCCCAACCAGCATTCTGCCATGCGCCACCTCTTTGGCACTTGGTCGGCAGTGTTTCCACCTTCAGTCCTTCGCAGGATTGAAGCGCAGCTGCAGTTTTCTCCACAGGTAAACCAGCAATCATCAGGTTTACCTCCTTTGAGAGCATCTGAATCTCCTCGGCCGGCTCATGGCATCCATGTCAATCCAAAATATTTGCGACAGTTGGAGACCTCAGATGTGGATAATGTTGGACCTCAAAGATTAAGCTCAACAGGAAATATGAGTCATACAGATTTTCCTGTTGGGTCCAATCGTATACAGCCATCTTCAACTGTCAGACTTGCAAGATCTTCTTCACCTTCAAATATTGGCCTCGATGAATATGAAGTAGAAAATTCTCCTAGAAGGTTTGGTGACCGGGCTTCTCCATCTAATTCTGTGTATGATTATAGAGCAATCAGAGATGAGGAGCCAAATGAAAGGCGGAGAAAACATTATCTTGATGGTAGTCAGAACCGGTTAAATAATGGACTTGAACATCAAAGACCAAGAGCTTTGATTGATGCATATGGAAAAGACAGTGGGGATAGAAGTTTAAATGATAAGCCTTTGCATGTTGGGCGGCTTGGTGTAAATGGTCTAGATCACAAAGCAACTTCAATGTCATGGCAGAATACTGAGGAGGATGAGTTTGATTGGAAATCTGTCGGCCCACCTATAACCGAGCACACTAGGAGTAATGATTTCTTGCCTTCAAATATACCACCTTCTAGAAGCTACAGGGCCAGGCCTGGCCTCGGAACACTGAATGCAAGCTCCTTAGATTCTGATATTGGGAGTAGTTGGTCTACTCAGGCATATCTACCTTCCGAACAGTCCTCTGTAGTTACTGAAGATCCAGTCCCCCCGCTTTCTTTTACTCATGGATTCGCGGGTAGATTCCAGTCTGAGATAAATCATAATCAGGTTTCTCGCCACCCTCAAGAACCCTGGAATATGCCTTTCCATCCCTCTCAGCATTCACAGACTCTTCTTAATACCAAAGAAATAGGTAAAAATTTCCATATGCCTGGTATGTCTCTAGGTGGTGAGAAAGTGTCTACTGATGCCGATGTGCGACTTCACGGGCCAACATCAAGAATGGGTTCTGGTGCTGACTTTGTTAATGCTGACTCTCGGTTAGTTATACCAATGTCAGTGGGTTTAAGGCCTCTAGTAAATGTGCACAATTCTCACCCGCTGCCTGTGCACCCTATTTTTCCATTGCAAAACCAGAGGAGTCAGTATGGTTTCATAAATTCTGTCGATACTGCTAAGAATCAAGCTCCATATAAGTCTATATATATGCCTGAGCAGCAGTTGGAGGGTTATGAAAACAAGGATTTGGGATTGGCAAAGCTAAGTCAGTTGACTAGTCAGAATGCCAGACTCATACCTCTTAATCAGCGAAACCAGGCTCAGGCCAGTCCTTTCCAACCACAATTTCATCCACATCAGGAGCCACCTTATTCAGTGGTACCACGTGGATACAATTTGCAAGGGCAGGGTGGTACTGGTATCGCAAATCCTGTACCTCATCTACAGTTGGGCTTACCAACTCACTATACCCCAAACACTAATTTGCGTGGGGACTCCTTGCCACCTCTACCACCTGGCCCTCCTCCTCCCATGCAAGGTGTATATCCTGGTCAAAAGGCTGGTCCGGTAGTCTCTAGCAACCAGCAAGGGAGTTCATATACTGGTTTGATTAGTTCTCTCATGGCTCAAGGTGTGATCTCATTGACAAATCCAAGTGGACTGCAGGATTCTGTAGGAGTTGAGTTTAATGCAGACCTTCTTAAGGTACGTCATGAATCTGCAATAACTGCTCTGTATTATGATCTCCCAAGACAATGCACAACCTGTGGTCTCCGGTTCAAGTGCCAAGAGGAGCACAGTAGTCATATGGATTGGCATGTGACAAAGAACAGGATGTCTAAAAACCGTAAGCAGAAGCCCTCTCGTAAGTGGTTTGTAACTACAAGCATGTGGCTCAGTGGTGCAGAGGCTTTGGGAACTGATGCAGTTCCTGGCTTTTTACCTGCTGACACCATTGTGGAAAAGAAGAGTGATGAAGAATTGGCTGTTCCTGCTGATGAGGATCAGAATTCATGCGCGTTATGTGGAGAACCTTTTGATGATTTTTATAGTGATGAGACAGAGGAGTGGATGTATAAAGGTGCTGTGTACTTGAATGCACCTCATGGGTCAACACCAGACATGGATAGGTCACAATTAGGTCCTATAGTGCATGCCAAATGCAGGCCGGAGTCCACTGATGTATCCCCTGGAGGTTTTGGACAAGATGAAGGGGGAACTATTGAAGAGGGTAGTCAAAGAAAACGATTGCGGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

950

Amino Acids

105.24

Weight (kDa)

6.23

Isoelectric Point (pI)

59.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CID	PF04818	75 - 181	3.6e-12	CID domain
zf_PCFS4	PF23228	855 - 921	2.4e-29	PCFS4 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04885
fragaria_vesca	FvH4_3g02510 FvH4_3g02510 FvH4_3g02510 FvH4_3g02510
malus_domestica	MD05G1342300.v1.1 MD10G1315900.v1.1
prunus_persica	Prupe.4G024700_v2.0.a1
pyrus_communis	pycom05g31160 pycom10g26810
rosa_chinensis	RchiOBHm_Chr5g0003821
rosa_laevigata	RLG00000031178
rosa_multiflora	Rmu_sc0004212.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072170
rosa_rugosa	Rorug04G0406900 Rorug04G0407000
rosa_samantha	Rh5AG034400 Rh5BG032700 Rh5CG036800 Rh5DG033100
rosa_wichuraiana	Rw5G003150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
Acc36I	ACCTGC	1 cut(s)	2542
Acc65I	GGTACC	1 cut(s)	1969
AccB1I	GGYRCC	1 cut(s)	1969
AccI	GTMKAC	4 cut(s)	436, 769, 1301, 1553
AccII	CGCG	3 cut(s)	144, 1385, 2609
AclWI	GGATC	2 cut(s)	1343, 2601
AcoI	YGGCCR	3 cut(s)	42, 403, 632
AcsI	RAATTY	4 cut(s)	847, 1510, 1750, 2599
AcuI	CTGAAG	2 cut(s)	519, 1365
AcvI	CACGTG	1 cut(s)	1976
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	6 cut(s)	122, 1971, 2005, 2025, 2298, 2681
AfiI	CCNNNNNNNGG	7 cut(s)	304, 641, 1250, 1912, 2126, 2293, 2754
AflII	CTTAAG	1 cut(s)	2291
AflIII	ACRYGT	1 cut(s)	177
AgeI	ACCGGT	2 cut(s)	117, 969
AhdI	GACNNNNNGTC	1 cut(s)	178
AhlI	ACTAGT	1 cut(s)	1865
AjiI	CACGTC	1 cut(s)	178
AjnI	CCWGG	9 cut(s)	1238, 1243, 1442, 1522, 1905, 2104, 2137, 2521, 2779
AjuI	GAANNNNNNNTTGG	2 cut(s)	1920, 1952
AleI	CACNNNNGTG	1 cut(s)	2546
Alw21I	GWGCWC	7 cut(s)	194, 237, 357, 1182, 1680, 1704, 2388
Alw26I	GTCTC	8 cut(s)	166, 288, 402, 674, 1536, 2167, 2366, 2642
Alw44I	GTGCAC	2 cut(s)	1676, 1700
AlwI	GGATC	2 cut(s)	1343, 2601
AlwNI	CAGNNNCTG	1 cut(s)	2522
Ama87I	CYCGRG	3 cut(s)	12, 167, 338
ApaLI	GTGCAC	2 cut(s)	1676, 1700
ApeKI	GCWGC	8 cut(s)	139, 208, 289, 361, 559, 562, 1693, 1807
ApoI	RAATTY	4 cut(s)	847, 1510, 1750, 2599
ArsI	GACNNNNNNTTYG	2 cut(s)	2137, 2169
AsiGI	ACCGGT	2 cut(s)	117, 969
Asp700I	GAANNNNTTC	1 cut(s)	1597
Asp718I	GGTACC	1 cut(s)	1969
AspLEI	GCGC	5 cut(s)	144, 329, 498, 559, 2609
AspS9I	GGNCC	9 cut(s)	343, 704, 759, 1163, 1236, 1580, 2108, 2153, 2732
AsuC2I	CCSGG	2 cut(s)	158, 872
AsuHPI	GGTGA	5 cut(s)	464, 801, 878, 1553, 1679
AsuII	TTCGAA	1 cut(s)	248
AvaI	CYCGRG	3 cut(s)	12, 167, 338
AvaII	GGWCC	5 cut(s)	343, 704, 759, 2153, 2732
AxyI	CCTNAGG	1 cut(s)	441
BaeGI	GKGCMC	2 cut(s)	1680, 1704
BaeI	ACNNNNGTAYC	2 cut(s)	2757, 2790
BanI	GGYRCC	1 cut(s)	1969
BanII	GRGCYC	1 cut(s)	237
BauI	CACGAG	1 cut(s)	236
BbrPI	CACGTG	1 cut(s)	1976
BbsI	GAAGAC	1 cut(s)	439
Bbv12I	GWGCWC	7 cut(s)	194, 237, 357, 1182, 1680, 1704, 2388
BbvI	GCAGC	8 cut(s)	151, 220, 301, 348, 549, 571, 1680, 1819
BccI	CCATC	5 cut(s)	329, 784, 889, 950, 1467
BceAI	ACGGC	1 cut(s)	316
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BciT130I	CCWGG	9 cut(s)	1240, 1245, 1444, 1524, 1907, 2106, 2139, 2523, 2781
BciVI	GTATCC	2 cut(s)	1973, 2785
BcnI	CCSGG	2 cut(s)	158, 872
BcoDI	GTCTC	8 cut(s)	166, 288, 402, 674, 1536, 2167, 2366, 2642
BcuI	ACTAGT	1 cut(s)	1865
BfaI	CTAG	9 cut(s)	24, 855, 1094, 1185, 1224, 1535, 1667, 1866, 2166
BfmI	CTRYAG	7 cut(s)	563, 1231, 1335, 2033, 2252, 2262, 2736
BfrI	CTTAAG	1 cut(s)	2291
BfuAI	ACCTGC	1 cut(s)	2542
BfuI	GTATCC	2 cut(s)	1973, 2785
BglII	AGATCT	1 cut(s)	800
Bme18I	GGWCC	5 cut(s)	343, 704, 759, 2153, 2732
BmeRI	GACNNNNNGTC	1 cut(s)	178
BmeT110I	CYCGRG	3 cut(s)	12, 167, 338
BmgBI	CACGTC	1 cut(s)	178
BmgT120I	GGNCC	9 cut(s)	343, 704, 759, 1163, 1236, 1580, 2108, 2153, 2732
BmiI	GGNNCC	5 cut(s)	345, 760, 924, 1953, 1971
BmrI	ACTGGG	1 cut(s)	341
BmsI	GCATC	7 cut(s)	210, 318, 626, 654, 1006, 1549, 2503
BmuI	ACTGGG	1 cut(s)	341
BpiI	GAAGAC	1 cut(s)	439
BpmI	CTGGAG	1 cut(s)	2802
Bpu10I	CCTNAGC	2 cut(s)	1803, 1911
Bpu14I	TTCGAA	1 cut(s)	248
BpuEI	CTTGAG	3 cut(s)	119, 1419, 2202
BpuMI	CCSGG	2 cut(s)	158, 872
BsaAI	YACGTR	1 cut(s)	1976
BsaBI	GATNNNNATC	1 cut(s)	2592
BsaHI	GRCGYC	1 cut(s)	318
BsaI	GGTCTC	4 cut(s)	166, 288, 674, 2366
BsaJI	CCNNGG	7 cut(s)	168, 195, 298, 629, 1249, 1442, 2779
BsaWI	WCCGGW	4 cut(s)	117, 969, 2155, 2364
BsaXI	ACNNNNNCTCC	6 cut(s)	88, 118, 1127, 1157, 2648, 2678
Bsc4I	CCNNNNNNNGG	7 cut(s)	304, 641, 1250, 1912, 2126, 2293, 2754
Bse118I	RCCGGY	4 cut(s)	117, 281, 634, 969
Bse1I	ACTGG	6 cut(s)	347, 1352, 1396, 1917, 2011, 2197
Bse21I	CCTNAGG	1 cut(s)	441
Bse3DI	GCAATG	1 cut(s)	1715
Bse8I	GATNNNNATC	1 cut(s)	2592
BseBI	CCWGG	9 cut(s)	1240, 1245, 1444, 1524, 1907, 2106, 2139, 2523, 2781
BseDI	CCNNGG	7 cut(s)	168, 195, 298, 629, 1249, 1442, 2779
BseGI	GGATG	6 cut(s)	645, 1144, 1459, 1939, 2430, 2667
BseJI	GATNNNNATC	1 cut(s)	2592
BseLI	CCNNNNNNNGG	7 cut(s)	304, 641, 1250, 1912, 2126, 2293, 2754
BseMI	GCAATG	1 cut(s)	1715
BseMII	CTCAG	9 cut(s)	432, 699, 1122, 1319, 1392, 1481, 1794, 1925, 2500
BseNI	ACTGG	6 cut(s)	347, 1352, 1396, 1917, 2011, 2197
BseRI	GAGGAG	9 cut(s)	212, 618, 935, 1148, 1744, 2103, 2106, 2396, 2669
BseSI	GKGCMC	2 cut(s)	1680, 1704
BseX3I	CGGCCG	1 cut(s)	632
BseXI	GCAGC	8 cut(s)	151, 220, 301, 348, 549, 571, 1680, 1819
BsgI	GTGCAG	2 cut(s)	227, 2514
Bsh1236I	CGCG	3 cut(s)	144, 1385, 2609
Bsh1285I	CGRYCG	2 cut(s)	118, 635
BshNI	GGYRCC	1 cut(s)	1969
BshTI	ACCGGT	2 cut(s)	117, 969
BsiEI	CGRYCG	2 cut(s)	118, 635
BsiHKAI	GWGCWC	7 cut(s)	194, 237, 357, 1182, 1680, 1704, 2388
BsiHKCI	CYCGRG	3 cut(s)	12, 167, 338
BslFI	GGGAC	3 cut(s)	329, 1340, 2096
BslI	CCNNNNNNNGG	7 cut(s)	304, 641, 1250, 1912, 2126, 2293, 2754
BsmAI	GTCTC	8 cut(s)	166, 288, 402, 674, 1536, 2167, 2366, 2642
BsmFI	GGGAC	3 cut(s)	329, 1340, 2096
BsmI	GAATGC	5 cut(s)	484, 1267, 1471, 1879, 2692
Bso31I	GGTCTC	4 cut(s)	166, 288, 674, 2366
BsoBI	CYCGRG	3 cut(s)	12, 167, 338
Bsp119I	TTCGAA	1 cut(s)	248
Bsp1286I	GDGCHC	7 cut(s)	194, 237, 357, 1182, 1680, 1704, 2388
Bsp143I	GATC	8 cut(s)	255, 265, 800, 1096, 1348, 2226, 2332, 2593
BspCNI	CTCAG	9 cut(s)	433, 698, 1123, 1318, 1393, 1480, 1795, 1924, 2499
BspFNI	CGCG	3 cut(s)	144, 1385, 2609
BspHI	TCATGA	1 cut(s)	2302
BspLI	GGNNCC	5 cut(s)	345, 760, 924, 1953, 1971
BspMAI	CTGCAG	2 cut(s)	567, 2256
BspMI	ACCTGC	1 cut(s)	2542
BspPI	GGATC	2 cut(s)	1343, 2601
BspT104I	TTCGAA	1 cut(s)	248
BspT107I	GGYRCC	1 cut(s)	1969
BspTI	CTTAAG	1 cut(s)	2291
BspTNI	GGTCTC	4 cut(s)	166, 288, 674, 2366
BsrDI	GCAATG	1 cut(s)	1715
BsrFI	RCCGGY	4 cut(s)	117, 281, 634, 969
BsrI	ACTGG	6 cut(s)	347, 1352, 1396, 1917, 2011, 2197
BssAI	RCCGGY	4 cut(s)	117, 281, 634, 969
BssECI	CCNNGG	7 cut(s)	168, 195, 298, 629, 1249, 1442, 2779
BssMI	GATC	8 cut(s)	255, 265, 800, 1096, 1348, 2226, 2332, 2593
BssNAI	GTATAC	1 cut(s)	770
BssNI	GRCGYC	1 cut(s)	318
BssSI	CACGAG	1 cut(s)	236
Bst1107I	GTATAC	1 cut(s)	770
Bst2BI	CACGAG	1 cut(s)	236
Bst2UI	CCWGG	9 cut(s)	1240, 1245, 1444, 1524, 1907, 2106, 2139, 2523, 2781
Bst4CI	ACNGT	8 cut(s)	386, 675, 787, 1034, 1329, 2037, 2390, 2438
Bst6I	CTCTTC	4 cut(s)	433, 1488, 2552, 2811
BstACI	GRCGYC	1 cut(s)	318
BstAFI	CTTAAG	1 cut(s)	2291
BstAPI	GCANNNNNTGC	2 cut(s)	361, 2318
BstBAI	YACGTR	1 cut(s)	1976
BstBI	TTCGAA	1 cut(s)	248
BstC8I	GCNNGC	6 cut(s)	283, 287, 636, 1267, 2745, 2756
BstDSI	CCRYGG	1 cut(s)	298
BstEII	GGTNACC	1 cut(s)	866
BstENI	CCTNNNNNAGG	1 cut(s)	2291
BstF5I	GGATG	6 cut(s)	645, 1144, 1459, 1939, 2430, 2667
BstFNI	CGCG	3 cut(s)	144, 1385, 2609
BstHHI	GCGC	5 cut(s)	144, 329, 498, 559, 2609
BstKTI	GATC	8 cut(s)	258, 268, 803, 1099, 1351, 2229, 2335, 2596
BstMAI	GTCTC	8 cut(s)	166, 288, 402, 674, 1536, 2167, 2366, 2642
BstMBI	GATC	8 cut(s)	255, 265, 800, 1096, 1348, 2226, 2332, 2593
BstMCI	CGRYCG	2 cut(s)	118, 635
BstNI	CCWGG	9 cut(s)	1240, 1245, 1444, 1524, 1907, 2106, 2139, 2523, 2781
BstNSI	RCATGY	4 cut(s)	1070, 2411, 2482, 2747
BstPI	GGTNACC	1 cut(s)	866
BstSFI	CTRYAG	7 cut(s)	563, 1231, 1335, 2033, 2252, 2262, 2736
BstSLI	GKGCMC	2 cut(s)	1680, 1704
BstUI	CGCG	3 cut(s)	144, 1385, 2609
BstV1I	GCAGC	8 cut(s)	151, 220, 301, 348, 549, 571, 1680, 1819
BstV2I	GAAGAC	1 cut(s)	439
BstX2I	RGATCY	2 cut(s)	800, 1348
BstXI	CCANNNNNNTGG	2 cut(s)	506, 1523
BstYI	RGATCY	2 cut(s)	800, 1348
BstZ17I	GTATAC	1 cut(s)	770
BstZI	CGGCCG	1 cut(s)	632
Bsu36I	CCTNAGG	1 cut(s)	441
BsuI	GTATCC	2 cut(s)	1973, 2785
BtgI	CCRYGG	1 cut(s)	298
BtgZI	GCGATG	2 cut(s)	262, 295
BtrI	CACGTC	1 cut(s)	178
BtsCI	GGATG	6 cut(s)	645, 1144, 1459, 1939, 2430, 2667
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	7 cut(s)	528, 1039, 1256, 1656, 1971, 2494, 2766
BveI	ACCTGC	1 cut(s)	2542
Cac8I	GCNNGC	6 cut(s)	283, 287, 636, 1267, 2745, 2756
CaiI	CAGNNNCTG	1 cut(s)	2522
CciI	TCATGA	1 cut(s)	2302
CfoI	GCGC	5 cut(s)	144, 329, 498, 559, 2609
Cfr10I	RCCGGY	4 cut(s)	117, 281, 634, 969
Cfr13I	GGNCC	9 cut(s)	343, 704, 759, 1163, 1236, 1580, 2108, 2153, 2732
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	6 cut(s)	121, 1970, 2004, 2024, 2297, 2680
CspAI	ACCGGT	2 cut(s)	117, 969
CspCI	CAANNNNNGTGG	2 cut(s)	1632, 1667
CviQI	GTAC	6 cut(s)	121, 1970, 2004, 2024, 2297, 2680
DpnI	GATC	8 cut(s)	257, 267, 802, 1098, 1350, 2228, 2334, 2595
DpnII	GATC	8 cut(s)	255, 265, 800, 1096, 1348, 2226, 2332, 2593
DraI	TTTAAA	1 cut(s)	1050
DrdI	GACNNNNNNGTC	1 cut(s)	158
DriI	GACNNNNNGTC	1 cut(s)	178
DseDI	GACNNNNNNGTC	1 cut(s)	158
EaeI	YGGCCR	3 cut(s)	42, 403, 632
EagI	CGGCCG	1 cut(s)	632
Eam1104I	CTCTTC	4 cut(s)	433, 1488, 2552, 2811
Eam1105I	GACNNNNNGTC	1 cut(s)	178
EarI	CTCTTC	4 cut(s)	433, 1488, 2552, 2811
EciI	GGCGGA	2 cut(s)	78, 952
Ecl136II	GAGCTC	1 cut(s)	235
EclXI	CGGCCG	1 cut(s)	632
Eco147I	AGGCCT	2 cut(s)	1243, 1663
Eco24I	GRGCYC	1 cut(s)	237
Eco31I	GGTCTC	4 cut(s)	166, 288, 674, 2366
Eco47I	GGWCC	5 cut(s)	343, 704, 759, 2153, 2732
Eco52I	CGGCCG	1 cut(s)	632
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	2 cut(s)	519, 1365
Eco72I	CACGTG	1 cut(s)	1976
Eco81I	CCTNAGG	1 cut(s)	441
Eco88I	CYCGRG	3 cut(s)	12, 167, 338
Eco91I	GGTNACC	1 cut(s)	866
EcoICRI	GAGCTC	1 cut(s)	235
EcoNI	CCTNNNNNAGG	1 cut(s)	2291
EcoO109I	RGGNCCY	2 cut(s)	343, 2732
EcoO65I	GGTNACC	1 cut(s)	866
EcoRI	GAATTC	1 cut(s)	2599
EcoRII	CCWGG	9 cut(s)	1238, 1243, 1442, 1522, 1905, 2104, 2137, 2521, 2779
EcoT22I	ATGCAT	1 cut(s)	1021
EcoT38I	GRGCYC	1 cut(s)	237
FalI	AAGNNNNNCTT	2 cut(s)	790, 822
FaqI	GGGAC	3 cut(s)	329, 1340, 2096
FauI	CCCGC	3 cut(s)	1368, 1378, 1698
FauNDI	CATATG	3 cut(s)	1021, 1518, 2397
FblI	GTMKAC	4 cut(s)	436, 769, 1301, 1553
FokI	GGATG	6 cut(s)	632, 1151, 1446, 1926, 2437, 2674
FriOI	GRGCYC	1 cut(s)	237
FspBI	CTAG	9 cut(s)	24, 855, 1094, 1185, 1224, 1535, 1667, 1866, 2166
GlaI	GCGC	5 cut(s)	143, 328, 497, 558, 2608
GsuI	CTGGAG	1 cut(s)	2802
HgaI	GACGC	1 cut(s)	326
HhaI	GCGC	5 cut(s)	144, 329, 498, 559, 2609
Hin1I	GRCGYC	1 cut(s)	318
Hin6I	GCGC	5 cut(s)	142, 327, 496, 557, 2607
HinP1I	GCGC	5 cut(s)	142, 327, 496, 557, 2607
HincII	GTYRAC	2 cut(s)	1863, 2703
HindII	GTYRAC	2 cut(s)	1863, 2703
HphI	GGTGA	5 cut(s)	464, 801, 878, 1553, 1679
Hpy188III	TCNNGA	9 cut(s)	12, 338, 953, 1094, 1224, 1436, 1590, 1949, 2303
Hpy99I	CGWCG	4 cut(s)	149, 152, 179, 320
HpyCH4III	ACNGT	8 cut(s)	386, 675, 787, 1034, 1329, 2037, 2390, 2438
HpyCH4IV	ACGT	3 cut(s)	177, 1975, 2299
HpySE526I	ACGT	3 cut(s)	177, 1975, 2299
Hsp92I	GRCGYC	1 cut(s)	318
HspAI	GCGC	5 cut(s)	142, 327, 496, 557, 2607
KpnI	GGTACC	1 cut(s)	1973
KroI	GCCGGC	2 cut(s)	281, 634
KroNI	GCCGGC	2 cut(s)	283, 636
Kzo9I	GATC	8 cut(s)	255, 265, 800, 1096, 1348, 2226, 2332, 2593
LmnI	GCTCC	7 cut(s)	4, 73, 922, 1274, 1783, 1951, 2383
Lsp1109I	GCAGC	8 cut(s)	151, 220, 301, 348, 549, 571, 1680, 1819
LweI	GCATC	7 cut(s)	210, 318, 626, 654, 1006, 1549, 2503
MaeI	CTAG	9 cut(s)	24, 855, 1094, 1185, 1224, 1535, 1667, 1866, 2166
MaeII	ACGT	3 cut(s)	177, 1975, 2299
MaeIII	GTNAC	5 cut(s)	866, 1339, 2410, 2467, 2721
MalI	GATC	8 cut(s)	257, 267, 802, 1098, 1350, 2228, 2334, 2595
MboI	GATC	8 cut(s)	255, 265, 800, 1096, 1348, 2226, 2332, 2593
MflI	RGATCY	2 cut(s)	800, 1348
MhlI	GDGCHC	7 cut(s)	194, 237, 357, 1182, 1680, 1704, 2388
MlyI	GAGTC	8 cut(s)	97, 745, 1474, 1619, 1741, 1875, 2078, 2771
MmeI	TCCRAC	4 cut(s)	657, 682, 1794, 1951
Mph1103I	ATGCAT	1 cut(s)	1021
MreI	CGCCGGCG	1 cut(s)	281
MroNI	GCCGGC	2 cut(s)	281, 634
MroXI	GAANNNNTTC	1 cut(s)	1597
MseI	TTAA	9 cut(s)	716, 974, 1049, 1488, 1617, 1658, 1893, 2277, 2292
MslI	CAYNNNNRTG	1 cut(s)	2546
MspA1I	CMGCKG	2 cut(s)	562, 1693
MspCI	CTTAAG	1 cut(s)	2291
Mva1269I	GAATGC	5 cut(s)	484, 1267, 1471, 1879, 2692
MvaI	CCWGG	9 cut(s)	1240, 1245, 1444, 1524, 1907, 2106, 2139, 2523, 2781
MvnI	CGCG	3 cut(s)	144, 1385, 2609
NaeI	GCCGGC	2 cut(s)	283, 636
NciI	CCSGG	2 cut(s)	158, 872
NdeI	CATATG	3 cut(s)	1021, 1518, 2397
NdeII	GATC	8 cut(s)	255, 265, 800, 1096, 1348, 2226, 2332, 2593
NgoMIV	GCCGGC	2 cut(s)	281, 634
NlaIV	GGNNCC	5 cut(s)	345, 760, 924, 1953, 1971
NmeAIII	GCCGAG	3 cut(s)	213, 431, 610
NmuCI	GTSAC	3 cut(s)	866, 2410, 2721
NsiI	ATGCAT	1 cut(s)	1021
NspI	RCATGY	4 cut(s)	1070, 2411, 2482, 2747
NspV	TTCGAA	1 cut(s)	248
OliI	CACNNNNGTG	1 cut(s)	2546
PaeI	GCATGC	1 cut(s)	2747
PaeR7I	CTCGAG	1 cut(s)	338
PagI	TCATGA	1 cut(s)	2302
PceI	AGGCCT	2 cut(s)	1243, 1663
PctI	GAATGC	5 cut(s)	484, 1267, 1471, 1879, 2692
PdiI	GCCGGC	2 cut(s)	283, 636
PdmI	GAANNNNTTC	1 cut(s)	1597
PfeI	GAWTC	8 cut(s)	334, 623, 1277, 1380, 1392, 1771, 2258, 2306
PflFI	GACNNNGTC	1 cut(s)	413
PinAI	ACCGGT	2 cut(s)	117, 969
PleI	GAGTC	8 cut(s)	97, 744, 1474, 1619, 1740, 1875, 2078, 2770
PmaCI	CACGTG	1 cut(s)	1976
PmlI	CACGTG	1 cut(s)	1976
PpsI	GAGTC	8 cut(s)	97, 744, 1474, 1619, 1740, 1875, 2078, 2770
Ppu21I	YACGTR	1 cut(s)	1976
PpuMI	RGGWCCY	2 cut(s)	343, 2732
Psp124BI	GAGCTC	1 cut(s)	237
Psp5II	RGGWCCY	2 cut(s)	343, 2732
Psp6I	CCWGG	9 cut(s)	1238, 1243, 1442, 1522, 1905, 2104, 2137, 2521, 2779
PspCI	CACGTG	1 cut(s)	1976
PspEI	GGTNACC	1 cut(s)	866
PspGI	CCWGG	9 cut(s)	1238, 1243, 1442, 1522, 1905, 2104, 2137, 2521, 2779
PspN4I	GGNNCC	5 cut(s)	345, 760, 924, 1953, 1971
PspPI	GGNCC	9 cut(s)	343, 704, 759, 1163, 1236, 1580, 2108, 2153, 2732
PspPPI	RGGWCCY	2 cut(s)	343, 2732
PstI	CTGCAG	2 cut(s)	567, 2256
PstNI	CAGNNNCTG	1 cut(s)	2522
PsuI	RGATCY	2 cut(s)	800, 1348
PsyI	GACNNNGTC	1 cut(s)	413
PvuII	CAGCTG	1 cut(s)	562
RsaI	GTAC	6 cut(s)	122, 1971, 2005, 2025, 2298, 2681
RsaNI	GTAC	6 cut(s)	121, 1970, 2004, 2024, 2297, 2680
RseI	CAYNNNNRTG	1 cut(s)	2546
SacI	GAGCTC	1 cut(s)	237
SaqAI	TTAA	9 cut(s)	716, 974, 1049, 1488, 1617, 1658, 1893, 2277, 2292
Sau3AI	GATC	8 cut(s)	255, 265, 800, 1096, 1348, 2226, 2332, 2593
Sau96I	GGNCC	9 cut(s)	343, 704, 759, 1163, 1236, 1580, 2108, 2153, 2732
SchI	GAGTC	8 cut(s)	97, 745, 1474, 1619, 1741, 1875, 2078, 2771
SduI	GDGCHC	7 cut(s)	194, 237, 357, 1182, 1680, 1704, 2388
SfaNI	GCATC	7 cut(s)	210, 318, 626, 654, 1006, 1549, 2503
SfcI	CTRYAG	7 cut(s)	563, 1231, 1335, 2033, 2252, 2262, 2736
Sfr274I	CTCGAG	1 cut(s)	338
SfuI	TTCGAA	1 cut(s)	248
SgrAI	CRCCGGYG	1 cut(s)	281
SinI	GGWCC	5 cut(s)	343, 704, 759, 2153, 2732
SlaI	CTCGAG	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	2546
SmlI	CTYRAG	5 cut(s)	134, 338, 1434, 2217, 2291
SmoI	CTYRAG	5 cut(s)	134, 338, 1434, 2217, 2291
SpeI	ACTAGT	1 cut(s)	1865
SphI	GCATGC	1 cut(s)	2747
SseBI	AGGCCT	2 cut(s)	1243, 1663
SspI	AATATT	2 cut(s)	665, 820
SspMI	CTAG	9 cut(s)	24, 855, 1094, 1185, 1224, 1535, 1667, 1866, 2166
SstI	GAGCTC	1 cut(s)	237
StuI	AGGCCT	2 cut(s)	1243, 1663
TaaI	ACNGT	8 cut(s)	386, 675, 787, 1034, 1329, 2037, 2390, 2438
TaiI	ACGT	3 cut(s)	180, 1978, 2302
TaqI	TCGA	5 cut(s)	114, 248, 339, 828, 1758
TatI	WGTACW	1 cut(s)	2679
TauI	GCSGC	6 cut(s)	79, 82, 85, 94, 187, 1078
TfiI	GAWTC	8 cut(s)	334, 623, 1277, 1380, 1392, 1771, 2258, 2306
Tru1I	TTAA	9 cut(s)	716, 974, 1049, 1488, 1617, 1658, 1893, 2277, 2292
Tru9I	TTAA	9 cut(s)	716, 974, 1049, 1488, 1617, 1658, 1893, 2277, 2292
TscAI	CASTG	7 cut(s)	528, 1039, 1263, 1656, 1971, 2494, 2773
TseFI	GTSAC	3 cut(s)	866, 2410, 2721
TseI	GCWGC	8 cut(s)	139, 208, 289, 361, 559, 562, 1693, 1807
Tsp45I	GTSAC	3 cut(s)	866, 2410, 2721
TspRI	CASTG	7 cut(s)	528, 1039, 1263, 1656, 1971, 2494, 2773
Tth111I	GACNNNGTC	1 cut(s)	413
Vha464I	CTTAAG	1 cut(s)	2291
VneI	GTGCAC	2 cut(s)	1676, 1700
VpaK11BI	GGWCC	5 cut(s)	343, 704, 759, 2153, 2732
XagI	CCTNNNNNAGG	1 cut(s)	2291
XapI	RAATTY	4 cut(s)	847, 1510, 1750, 2599
XbaI	TCTAGA	2 cut(s)	1093, 1223
XceI	RCATGY	4 cut(s)	1070, 2411, 2482, 2747
XhoI	CTCGAG	1 cut(s)	338
XmiI	GTMKAC	4 cut(s)	436, 769, 1301, 1553
XmnI	GAANNNNTTC	1 cut(s)	1597
XspI	CTAG	9 cut(s)	24, 855, 1094, 1185, 1224, 1535, 1667, 1866, 2166
Zsp2I	ATGCAT	1 cut(s)	1021

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.