Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009992

Physical Location & Seq

Genomic Coordinates Forward (+)

2370019 .. 2376102

Gene Structure 6084 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28511

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2847 bp

ATGGAGCTTTCCCGAGAAAACCCTAGACCCCTCGCTTTTCCGGTCACCAAGCCCATGCCCGACCTCACTCCCAAGCCGCCGCCTCCGCCGCCGACCACGACTCCGATTATCGACCGCTACAAAGTCCTGCTCAAGCAGCGGGACGACGACCTCAGGGTCTCGCCCGAGGACGACGTGTCGCCGCCGAGCACCGAGGAGATTGTGCAGCTCTACGAGATGCTCTTGTCCGAGCTCGTGTTCAATTCGAAGCCGATCATTACCGATCTCACTATCATCGCCGGCGAGCAGCGAGACCACGGCAAGGGCATCGCCGACGCCATCTGCGCTCGGATTCTCGAGGTCCCAGTTGAGCACAAGCTGCCTTCGTTATATCTTTTAGACAGTATTGTAAAGAACATTGGCCGAGACTATGTCAGATACTTCTCTTCCCGTCTACCTGAGGTCTTCTGCGAGGCATACAGGCAAGTTCACCCCAACCAGCATTCTGCCATGCGCCACCTCTTTGGCACTTGGTCGGCAGTGTTTCCACCTTCAGTCCTTCGCAGGATTGAAGCGCAGCTGCAGTTTTCTCCACAGGTAAACCAGCAATCATCAGGTTTACCTCCTTTGAGAGCATCTGAATCTCCTCGGCCGGCTCATGGCATCCATGTCAATCCAAAATATTTACGTCAGTTGGAGACCTCAGATGTGGATAATGTTGGACCTCAAAGATTAAGCTCAACAGGAAATATGAGTCATACAGATTTTCCTGTTGGGTCCAATCGTATACAGCCATCTTCAACTGTCAGACTTGCAAGATCTTCTTCACCTTCAAATATTGGCCTTGATGAATATGAAGTAGAAAATTCTCCAAAAAGGTTTGGTGACCGGGCTTCTCCATCTAATTCTGTGTATGATTATAGAGCAATCAGAGATGAGGAGCCAAATGAAAGGCGGAGAAAACATTATCTTGATGGTAGTCAGAACCGGTTAAATAATGGACTTGAACATCAAAGACCAAGAGCTTTGATTGATGCATATGGAAAAGACAGTGGAGATAGAAGTTTAAATGATAAGCCTTTGCATGTTGGGCGGCTTGGTGTAAATGGTCTAGATCACAAAGCAACTTCAATGTCATGGCAGAATACTGAGGAGGATGAGTTTGATTGGAAATCTGTTGGCCCACCTATAACCGAGCACACTAGGAGTAATGATTTCTTGCCTTCAAATATACCACCTTCTAGAAGCTACAGGGCCAGCCCTGGCCTCGGAACACTGAATGCTAGCTCCTTAGATTCTGATATTGGGAGTAGTTGGTCTACTCAGGCATACCTACCTTCCGAGCAGTCCTCTGTAGTTGCTGAAGATCCAGCCCCCCCGCTTTCTTTTACTCGTGGATTCGCGGGTAGATTCCAGTCCGAGATAAATCATAATCAGGGTTCTCGCCACCCTCAAGAACCCTGGAATATGCCTTTCCATCCCTCTCAGCATTCACAGACTCTTCTTAATTCCAAAGAAATAGGTAGAAATTTCCATATGCCTGGTATGTCTCTAGGTGGTGAGAAAGTGTCTACTGATGCCGATGTGCGACTTCACGGGCCAACATCAAGAATTGGTTCTGGTGCTGACTTTGTTAATGCTGACTCTCGGTTAGTTATACCAATGTCAGTGGGTTTAAGGCCTCCAGTAAACGTGCACAATTCTCACCCGCCGCCTTTGCACCCTATTTTTCCATTGCAAAACCAGAGGAGTCAGTATGGTTTCATAAATTCTGTCGATACTGCTAAGAATCAAGGTCCATATAAGTCTATGTATATGCCTGAGCAGCAGTTGGACGGTTATGAAAACAAGGATTTGGGGTTGGCAAAGCTAAGTCAGTTGACTAGTCAGAATGCCAGACTCATACCTGTTAATCAGCGAAACCAGGCTCAGGTCAGTCCTTTCCAACCACAATTTCATCCACATCAGGAGCCACCTTATTCAGTGGGACCACGTGGATACAATTTGCAAGGGCAGGGTGGTACTGGTATTGCAAATCCTGTACCTCGTCTACAGTTGGGCTTACCAACTCACTATACCCCAAACACTAATTTGCGTGGGGACTCCTTGCCACCTCTACCACCTGGCCCCCCTCCTCCCATGCAAGGTGTATTTCCTGGTCAAAAGGCTGGTCCGGTAGTCTCTAGCAACCAGCAAGGGAGTTCATATACTGGTTTGATTAGTTCTCTAATGGCTCAAGGTGTGATCTCATTGACAAATCCAAGTGGACTGCAGGATTCTGTAGGAGTTGAGTTTAATGCAGACCTTCTTAAGGTACGTCATGAATCTGCAATAACTGCTCTGTATTATGATCTCCCAAGACAATGCACAACCTGTGGTCTCCGGTTCAAGTGCCAAGAGGAGCACAGTAGTCATATGGATTGGCATGTGACAAAGAACAGGATGTCTAAAAACCGTAAGCAGAAGCCCTCTCGTAAGTGGTTTGTAACTACAAGCATGTGGCTCAGTGGTGCAGAGGCTTTGGGAACTGATGCAGTTCCTGGCTTTTTACCTGCTGACACCATTGCGGAAAAGAAGAGTGATGAAGAATTGGCTGTTCCTGCTGATGAGGATCAAAATTCATGCGCGTTATGTGGAGAGCCTTTTGATGATTTTTATAGTGATGAGACAGAGGAGTGGATGTATAAAGGTGCTGTGTACTTGAATGCACCTCATGGGTCAACACCAGACATGGATAGGTCACAATTAGGTCCTATAGTGCATGCCAAATGCAGGCCGGAGTCCACTGATGTATCCCCTGGAGGTTTTGGACAAGATGAAGGGGGAACTATTGAAGAGGGTAGTCAAAGAAAACGTTTGCGGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

948

Amino Acids

104.95

Weight (kDa)

6.24

Isoelectric Point (pI)

59.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CID	PF04818	74 - 180	3.6e-12	CID domain
zf_PCFS4	PF23228	854 - 920	2.4e-29	PCFS4 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04885
fragaria_vesca	FvH4_3g02510 FvH4_3g02510 FvH4_3g02510 FvH4_3g02510
malus_domestica	MD05G1342300.v1.1 MD10G1315900.v1.1
prunus_persica	Prupe.4G024700_v2.0.a1
pyrus_communis	pycom05g31160 pycom10g26810
rosa_chinensis	RchiOBHm_Chr5g0003821
rosa_laevigata	RLG00000031178
rosa_multiflora	Rmu_sc0004212.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072170
rosa_rugosa	Rorug04G0406900 Rorug04G0407000
rosa_samantha	Rh5AG034400 Rh5BG032700 Rh5CG036800 Rh5DG033100
rosa_wichuraiana	Rw5G003150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
Acc36I	ACCTGC	1 cut(s)	2539
AccI	GTMKAC	5 cut(s)	433, 766, 1298, 1550, 2029
AccII	CGCG	2 cut(s)	1382, 2606
AclI	AACGTT	1 cut(s)	2833
AclWI	GGATC	2 cut(s)	1340, 2598
AcoI	YGGCCR	2 cut(s)	400, 629
AcsI	RAATTY	4 cut(s)	844, 1507, 1747, 2596
AcuI	CTGAAG	2 cut(s)	516, 1362
AcvI	CACGTG	1 cut(s)	1973
AcyI	GRCGYC	1 cut(s)	315
AfaI	GTAC	4 cut(s)	2002, 2022, 2295, 2678
AfiI	CCNNNNNNNGG	7 cut(s)	301, 638, 1247, 1909, 2123, 2290, 2751
AflII	CTTAAG	1 cut(s)	2288
AflIII	ACRYGT	1 cut(s)	174
AgeI	ACCGGT	1 cut(s)	966
AhdI	GACNNNNNGTC	1 cut(s)	175
AhlI	ACTAGT	1 cut(s)	1862
AjiI	CACGTC	1 cut(s)	175
AjnI	CCWGG	8 cut(s)	1240, 1439, 1519, 1902, 2101, 2134, 2518, 2776
AjuI	GAANNNNNNNTTGG	2 cut(s)	1917, 1949
Alw21I	GWGCWC	6 cut(s)	191, 234, 354, 1179, 1677, 2385
Alw26I	GTCTC	8 cut(s)	163, 285, 399, 671, 1533, 2164, 2363, 2639
Alw44I	GTGCAC	1 cut(s)	1673
AlwI	GGATC	2 cut(s)	1340, 2598
AlwNI	CAGNNNCTG	1 cut(s)	2519
Ama87I	CYCGRG	3 cut(s)	12, 164, 335
ApaLI	GTGCAC	1 cut(s)	1673
ApeKI	GCWGC	7 cut(s)	136, 205, 286, 358, 556, 559, 1804
ApoI	RAATTY	4 cut(s)	844, 1507, 1747, 2596
ArsI	GACNNNNNNTTYG	2 cut(s)	2134, 2166
AsiGI	ACCGGT	1 cut(s)	966
Asp700I	GAANNNNTTC	1 cut(s)	1594
AspLEI	GCGC	4 cut(s)	326, 495, 556, 2606
AsuC2I	CCSGG	1 cut(s)	869
AsuHPI	GGTGA	6 cut(s)	37, 461, 798, 875, 1550, 1676
AsuII	TTCGAA	1 cut(s)	245
AsuNHI	GCTAGC	1 cut(s)	1262
AvaI	CYCGRG	3 cut(s)	12, 164, 335
AvaII	GGWCC	7 cut(s)	340, 701, 756, 1775, 1967, 2150, 2729
AxyI	CCTNAGG	2 cut(s)	152, 438
BaeGI	GKGCMC	1 cut(s)	1677
BaeI	ACNNNNGTAYC	2 cut(s)	2754, 2787
BanII	GRGCYC	1 cut(s)	234
BauI	CACGAG	2 cut(s)	233, 1371
BbrPI	CACGTG	1 cut(s)	1973
BbsI	GAAGAC	1 cut(s)	436
Bbv12I	GWGCWC	6 cut(s)	191, 234, 354, 1179, 1677, 2385
BbvI	GCAGC	7 cut(s)	148, 217, 298, 345, 546, 568, 1816
BccI	CCATC	5 cut(s)	326, 781, 886, 947, 1464
BceAI	ACGGC	1 cut(s)	313
BcgI	CGANNNNNNTGC	2 cut(s)	289, 323
BciT130I	CCWGG	8 cut(s)	1242, 1441, 1521, 1904, 2103, 2136, 2520, 2778
BciVI	GTATCC	2 cut(s)	1970, 2782
BcnI	CCSGG	1 cut(s)	869
BcoDI	GTCTC	8 cut(s)	163, 285, 399, 671, 1533, 2164, 2363, 2639
BcuI	ACTAGT	1 cut(s)	1862
BfaI	CTAG	8 cut(s)	24, 1091, 1182, 1221, 1263, 1532, 1863, 2163
BfmI	CTRYAG	7 cut(s)	560, 1228, 1332, 2030, 2249, 2259, 2733
BfrI	CTTAAG	1 cut(s)	2288
BfuAI	ACCTGC	1 cut(s)	2539
BfuI	GTATCC	2 cut(s)	1970, 2782
BglII	AGATCT	1 cut(s)	797
Bme1390I	CCNGG	9 cut(s)	869, 1242, 1441, 1521, 1904, 2103, 2136, 2520, 2778
Bme18I	GGWCC	7 cut(s)	340, 701, 756, 1775, 1967, 2150, 2729
BmeRI	GACNNNNNGTC	1 cut(s)	175
BmeT110I	CYCGRG	3 cut(s)	12, 164, 335
BmgBI	CACGTC	1 cut(s)	175
BmiI	GGNNCC	6 cut(s)	342, 757, 921, 1950, 1968, 2107
BmrFI	CCNGG	9 cut(s)	869, 1242, 1441, 1521, 1904, 2103, 2136, 2520, 2778
BmrI	ACTGGG	1 cut(s)	338
BmsI	GCATC	7 cut(s)	207, 315, 623, 651, 1003, 1546, 2500
BmtI	GCTAGC	1 cut(s)	1266
BmuI	ACTGGG	1 cut(s)	338
BpiI	GAAGAC	1 cut(s)	436
BplI	GAGNNNNNCTC	2 cut(s)	1313, 1345
BpmI	CTGGAG	2 cut(s)	1647, 2799
Bpu10I	CCTNAGC	2 cut(s)	1800, 1908
Bpu14I	TTCGAA	1 cut(s)	245
BpuEI	CTTGAG	3 cut(s)	116, 1416, 2199
BpuMI	CCSGG	1 cut(s)	869
BsaAI	YACGTR	1 cut(s)	1973
BsaBI	GATNNNNATC	1 cut(s)	2589
BsaHI	GRCGYC	1 cut(s)	315
BsaI	GGTCTC	4 cut(s)	163, 285, 671, 2363
BsaJI	CCNNGG	8 cut(s)	165, 192, 295, 626, 1240, 1246, 1439, 2776
BsaWI	WCCGGW	4 cut(s)	40, 966, 2152, 2361
BsaXI	ACNNNNNCTCC	6 cut(s)	85, 115, 1124, 1154, 2645, 2675
Bsc4I	CCNNNNNNNGG	7 cut(s)	301, 638, 1247, 1909, 2123, 2290, 2751
Bse118I	RCCGGY	3 cut(s)	278, 631, 966
Bse1I	ACTGG	5 cut(s)	344, 1393, 1664, 2008, 2194
Bse21I	CCTNAGG	2 cut(s)	152, 438
Bse3DI	GCAATG	2 cut(s)	1712, 2541
Bse8I	GATNNNNATC	1 cut(s)	2589
BseBI	CCWGG	8 cut(s)	1242, 1441, 1521, 1904, 2103, 2136, 2520, 2778
BseDI	CCNNGG	8 cut(s)	165, 192, 295, 626, 1240, 1246, 1439, 2776
BseGI	GGATG	6 cut(s)	642, 1141, 1456, 1936, 2427, 2664
BseJI	GATNNNNATC	1 cut(s)	2589
BseLI	CCNNNNNNNGG	7 cut(s)	301, 638, 1247, 1909, 2123, 2290, 2751
BseMI	GCAATG	2 cut(s)	1712, 2541
BseMII	CTCAG	9 cut(s)	166, 429, 696, 1119, 1316, 1478, 1791, 1922, 2497
BseNI	ACTGG	5 cut(s)	344, 1393, 1664, 2008, 2194
BseRI	GAGGAG	8 cut(s)	209, 615, 932, 1145, 1741, 2103, 2393, 2666
BseSI	GKGCMC	1 cut(s)	1677
BseX3I	CGGCCG	1 cut(s)	629
BseXI	GCAGC	7 cut(s)	148, 217, 298, 345, 546, 568, 1816
BsgI	GTGCAG	2 cut(s)	224, 2511
Bsh1236I	CGCG	2 cut(s)	1382, 2606
Bsh1285I	CGRYCG	2 cut(s)	115, 632
BshTI	ACCGGT	1 cut(s)	966
BsiEI	CGRYCG	2 cut(s)	115, 632
BsiHKAI	GWGCWC	6 cut(s)	191, 234, 354, 1179, 1677, 2385
BsiHKCI	CYCGRG	3 cut(s)	12, 164, 335
BsiSI	CCGG	8 cut(s)	41, 279, 632, 868, 967, 2153, 2362, 2756
BslFI	GGGAC	4 cut(s)	155, 326, 1980, 2093
BslI	CCNNNNNNNGG	7 cut(s)	301, 638, 1247, 1909, 2123, 2290, 2751
BsmAI	GTCTC	8 cut(s)	163, 285, 399, 671, 1533, 2164, 2363, 2639
BsmFI	GGGAC	4 cut(s)	155, 326, 1980, 2093
BsmI	GAATGC	5 cut(s)	481, 1264, 1468, 1876, 2689
Bso31I	GGTCTC	4 cut(s)	163, 285, 671, 2363
BsoBI	CYCGRG	3 cut(s)	12, 164, 335
Bsp119I	TTCGAA	1 cut(s)	245
Bsp1286I	GDGCHC	6 cut(s)	191, 234, 354, 1179, 1677, 2385
Bsp143I	GATC	8 cut(s)	252, 262, 797, 1093, 1345, 2223, 2329, 2590
BspCNI	CTCAG	9 cut(s)	165, 430, 695, 1120, 1315, 1477, 1792, 1921, 2496
BspFNI	CGCG	2 cut(s)	1382, 2606
BspHI	TCATGA	1 cut(s)	2299
BspLI	GGNNCC	6 cut(s)	342, 757, 921, 1950, 1968, 2107
BspMAI	CTGCAG	2 cut(s)	564, 2253
BspMI	ACCTGC	1 cut(s)	2539
BspOI	GCTAGC	1 cut(s)	1266
BspPI	GGATC	2 cut(s)	1340, 2598
BspT104I	TTCGAA	1 cut(s)	245
BspTI	CTTAAG	1 cut(s)	2288
BspTNI	GGTCTC	4 cut(s)	163, 285, 671, 2363
BsrDI	GCAATG	2 cut(s)	1712, 2541
BsrFI	RCCGGY	3 cut(s)	278, 631, 966
BsrI	ACTGG	5 cut(s)	344, 1393, 1664, 2008, 2194
BssAI	RCCGGY	3 cut(s)	278, 631, 966
BssECI	CCNNGG	8 cut(s)	165, 192, 295, 626, 1240, 1246, 1439, 2776
BssMI	GATC	8 cut(s)	252, 262, 797, 1093, 1345, 2223, 2329, 2590
BssNAI	GTATAC	1 cut(s)	767
BssNI	GRCGYC	1 cut(s)	315
BssSI	CACGAG	2 cut(s)	233, 1371
Bst1107I	GTATAC	1 cut(s)	767
Bst2BI	CACGAG	2 cut(s)	233, 1371
Bst2UI	CCWGG	8 cut(s)	1242, 1441, 1521, 1904, 2103, 2136, 2520, 2778
Bst4CI	ACNGT	7 cut(s)	383, 784, 1031, 1817, 2034, 2387, 2435
Bst6I	CTCTTC	4 cut(s)	430, 1485, 2549, 2808
BstACI	GRCGYC	1 cut(s)	315
BstAFI	CTTAAG	1 cut(s)	2288
BstAPI	GCANNNNNTGC	2 cut(s)	358, 2315
BstBAI	YACGTR	1 cut(s)	1973
BstBI	TTCGAA	1 cut(s)	245
BstC8I	GCNNGC	7 cut(s)	280, 284, 633, 1237, 1264, 2742, 2753
BstDSI	CCRYGG	1 cut(s)	295
BstEII	GGTNACC	2 cut(s)	43, 863
BstENI	CCTNNNNNAGG	1 cut(s)	2288
BstF5I	GGATG	6 cut(s)	642, 1141, 1456, 1936, 2427, 2664
BstFNI	CGCG	2 cut(s)	1382, 2606
BstHHI	GCGC	4 cut(s)	326, 495, 556, 2606
BstKTI	GATC	8 cut(s)	255, 265, 800, 1096, 1348, 2226, 2332, 2593
BstMAI	GTCTC	8 cut(s)	163, 285, 399, 671, 1533, 2164, 2363, 2639
BstMBI	GATC	8 cut(s)	252, 262, 797, 1093, 1345, 2223, 2329, 2590
BstMCI	CGRYCG	2 cut(s)	115, 632
BstNI	CCWGG	8 cut(s)	1242, 1441, 1521, 1904, 2103, 2136, 2520, 2778
BstNSI	RCATGY	4 cut(s)	1067, 2408, 2479, 2744
BstPI	GGTNACC	2 cut(s)	43, 863
BstSCI	CCNGG	9 cut(s)	867, 1240, 1439, 1519, 1902, 2101, 2134, 2518, 2776
BstSFI	CTRYAG	7 cut(s)	560, 1228, 1332, 2030, 2249, 2259, 2733
BstSLI	GKGCMC	1 cut(s)	1677
BstUI	CGCG	2 cut(s)	1382, 2606
BstV1I	GCAGC	7 cut(s)	148, 217, 298, 345, 546, 568, 1816
BstV2I	GAAGAC	1 cut(s)	436
BstX2I	RGATCY	2 cut(s)	797, 1345
BstXI	CCANNNNNNTGG	2 cut(s)	503, 1520
BstYI	RGATCY	2 cut(s)	797, 1345
BstZ17I	GTATAC	1 cut(s)	767
BstZI	CGGCCG	1 cut(s)	629
Bsu36I	CCTNAGG	2 cut(s)	152, 438
BsuI	GTATCC	2 cut(s)	1970, 2782
BtgI	CCRYGG	1 cut(s)	295
BtgZI	GCGATG	2 cut(s)	259, 292
BtrI	CACGTC	1 cut(s)	175
BtsCI	GGATG	6 cut(s)	642, 1141, 1456, 1936, 2427, 2664
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	7 cut(s)	525, 1036, 1253, 1653, 1968, 2491, 2763
BveI	ACCTGC	1 cut(s)	2539
Cac8I	GCNNGC	7 cut(s)	280, 284, 633, 1237, 1264, 2742, 2753
CaiI	CAGNNNCTG	1 cut(s)	2519
CciI	TCATGA	1 cut(s)	2299
CfoI	GCGC	4 cut(s)	326, 495, 556, 2606
Cfr10I	RCCGGY	3 cut(s)	278, 631, 966
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	4 cut(s)	2001, 2021, 2294, 2677
CspAI	ACCGGT	1 cut(s)	966
CspCI	CAANNNNNGTGG	2 cut(s)	1629, 1664
CviQI	GTAC	4 cut(s)	2001, 2021, 2294, 2677
DpnI	GATC	8 cut(s)	254, 264, 799, 1095, 1347, 2225, 2331, 2592
DpnII	GATC	8 cut(s)	252, 262, 797, 1093, 1345, 2223, 2329, 2590
DraI	TTTAAA	1 cut(s)	1047
DrdI	GACNNNNNNGTC	1 cut(s)	155
DriI	GACNNNNNGTC	1 cut(s)	175
DseDI	GACNNNNNNGTC	1 cut(s)	155
EaeI	YGGCCR	2 cut(s)	400, 629
EagI	CGGCCG	1 cut(s)	629
Eam1104I	CTCTTC	4 cut(s)	430, 1485, 2549, 2808
Eam1105I	GACNNNNNGTC	1 cut(s)	175
EarI	CTCTTC	4 cut(s)	430, 1485, 2549, 2808
EciI	GGCGGA	2 cut(s)	75, 949
Ecl136II	GAGCTC	1 cut(s)	232
EclXI	CGGCCG	1 cut(s)	629
Eco147I	AGGCCT	1 cut(s)	1660
Eco24I	GRGCYC	1 cut(s)	234
Eco31I	GGTCTC	4 cut(s)	163, 285, 671, 2363
Eco47I	GGWCC	7 cut(s)	340, 701, 756, 1775, 1967, 2150, 2729
Eco52I	CGGCCG	1 cut(s)	629
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	2 cut(s)	516, 1362
Eco72I	CACGTG	1 cut(s)	1973
Eco81I	CCTNAGG	2 cut(s)	152, 438
Eco88I	CYCGRG	3 cut(s)	12, 164, 335
Eco91I	GGTNACC	2 cut(s)	43, 863
EcoICRI	GAGCTC	1 cut(s)	232
EcoNI	CCTNNNNNAGG	1 cut(s)	2288
EcoO109I	RGGNCCY	2 cut(s)	340, 2729
EcoO65I	GGTNACC	2 cut(s)	43, 863
EcoRII	CCWGG	8 cut(s)	1240, 1439, 1519, 1902, 2101, 2134, 2518, 2776
EcoT22I	ATGCAT	1 cut(s)	1018
EcoT38I	GRGCYC	1 cut(s)	234
FalI	AAGNNNNNCTT	2 cut(s)	787, 819
FaqI	GGGAC	4 cut(s)	155, 326, 1980, 2093
FauI	CCCGC	4 cut(s)	132, 1365, 1375, 1695
FauNDI	CATATG	3 cut(s)	1018, 1515, 2394
FblI	GTMKAC	5 cut(s)	433, 766, 1298, 1550, 2029
FokI	GGATG	6 cut(s)	629, 1148, 1443, 1923, 2434, 2671
FriOI	GRGCYC	1 cut(s)	234
FspBI	CTAG	8 cut(s)	24, 1091, 1182, 1221, 1263, 1532, 1863, 2163
GlaI	GCGC	4 cut(s)	325, 494, 555, 2605
GsuI	CTGGAG	2 cut(s)	1647, 2799
HapII	CCGG	8 cut(s)	41, 279, 632, 868, 967, 2153, 2362, 2756
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	4 cut(s)	326, 495, 556, 2606
Hin1I	GRCGYC	1 cut(s)	315
Hin6I	GCGC	4 cut(s)	324, 493, 554, 2604
HinP1I	GCGC	4 cut(s)	324, 493, 554, 2604
HincII	GTYRAC	2 cut(s)	1860, 2700
HindII	GTYRAC	2 cut(s)	1860, 2700
HpaII	CCGG	8 cut(s)	41, 279, 632, 868, 967, 2153, 2362, 2756
HphI	GGTGA	6 cut(s)	37, 461, 798, 875, 1550, 1676
Hpy188III	TCNNGA	9 cut(s)	12, 335, 950, 1091, 1221, 1433, 1587, 1946, 2300
Hpy99I	CGWCG	3 cut(s)	149, 176, 317
HpyAV	CCTTC	9 cut(s)	372, 540, 548, 819, 1212, 1227, 1326, 2294, 2792
HpyCH4III	ACNGT	7 cut(s)	383, 784, 1031, 1817, 2034, 2387, 2435
HpyCH4IV	ACGT	6 cut(s)	174, 667, 1671, 1972, 2296, 2833
HpySE526I	ACGT	6 cut(s)	174, 667, 1671, 1972, 2296, 2833
Hsp92I	GRCGYC	1 cut(s)	315
HspAI	GCGC	4 cut(s)	324, 493, 554, 2604
KroI	GCCGGC	2 cut(s)	278, 631
KroNI	GCCGGC	2 cut(s)	280, 633
Kzo9I	GATC	8 cut(s)	252, 262, 797, 1093, 1345, 2223, 2329, 2590
LmnI	GCTCC	5 cut(s)	4, 919, 1271, 1948, 2380
Lsp1109I	GCAGC	7 cut(s)	148, 217, 298, 345, 546, 568, 1816
LweI	GCATC	7 cut(s)	207, 315, 623, 651, 1003, 1546, 2500
MaeI	CTAG	8 cut(s)	24, 1091, 1182, 1221, 1263, 1532, 1863, 2163
MaeII	ACGT	6 cut(s)	174, 667, 1671, 1972, 2296, 2833
MaeIII	GTNAC	5 cut(s)	43, 863, 2407, 2464, 2718
MalI	GATC	8 cut(s)	254, 264, 799, 1095, 1347, 2225, 2331, 2592
MboI	GATC	8 cut(s)	252, 262, 797, 1093, 1345, 2223, 2329, 2590
MflI	RGATCY	2 cut(s)	797, 1345
MhlI	GDGCHC	6 cut(s)	191, 234, 354, 1179, 1677, 2385
MlyI	GAGTC	8 cut(s)	94, 742, 1471, 1616, 1738, 1872, 2075, 2768
MmeI	TCCRAC	4 cut(s)	654, 679, 1791, 1948
Mph1103I	ATGCAT	1 cut(s)	1018
MreI	CGCCGGCG	1 cut(s)	278
MroNI	GCCGGC	2 cut(s)	278, 631
MroXI	GAANNNNTTC	1 cut(s)	1594
MseI	TTAA	9 cut(s)	713, 971, 1046, 1485, 1614, 1655, 1890, 2274, 2289
MspA1I	CMGCKG	2 cut(s)	139, 559
MspCI	CTTAAG	1 cut(s)	2288
MspI	CCGG	8 cut(s)	41, 279, 632, 868, 967, 2153, 2362, 2756
MspR9I	CCNGG	9 cut(s)	869, 1242, 1441, 1521, 1904, 2103, 2136, 2520, 2778
Mva1269I	GAATGC	5 cut(s)	481, 1264, 1468, 1876, 2689
MvaI	CCWGG	8 cut(s)	1242, 1441, 1521, 1904, 2103, 2136, 2520, 2778
MvnI	CGCG	2 cut(s)	1382, 2606
NaeI	GCCGGC	2 cut(s)	280, 633
NciI	CCSGG	1 cut(s)	869
NdeI	CATATG	3 cut(s)	1018, 1515, 2394
NdeII	GATC	8 cut(s)	252, 262, 797, 1093, 1345, 2223, 2329, 2590
NgoMIV	GCCGGC	2 cut(s)	278, 631
NheI	GCTAGC	1 cut(s)	1262
NlaIV	GGNNCC	6 cut(s)	342, 757, 921, 1950, 1968, 2107
NmeAIII	GCCGAG	3 cut(s)	210, 428, 607
NmuCI	GTSAC	4 cut(s)	43, 863, 2407, 2718
NsiI	ATGCAT	1 cut(s)	1018
NspI	RCATGY	4 cut(s)	1067, 2408, 2479, 2744
NspV	TTCGAA	1 cut(s)	245
PaeI	GCATGC	1 cut(s)	2744
PaeR7I	CTCGAG	1 cut(s)	335
PagI	TCATGA	1 cut(s)	2299
PceI	AGGCCT	1 cut(s)	1660
PctI	GAATGC	5 cut(s)	481, 1264, 1468, 1876, 2689
PdiI	GCCGGC	2 cut(s)	280, 633
PdmI	GAANNNNTTC	1 cut(s)	1594
PfeI	GAWTC	8 cut(s)	331, 620, 1274, 1377, 1389, 1768, 2255, 2303
PflFI	GACNNNGTC	1 cut(s)	410
PinAI	ACCGGT	1 cut(s)	966
PleI	GAGTC	8 cut(s)	94, 741, 1471, 1616, 1737, 1872, 2075, 2767
PmaCI	CACGTG	1 cut(s)	1973
PmlI	CACGTG	1 cut(s)	1973
PpsI	GAGTC	8 cut(s)	94, 741, 1471, 1616, 1737, 1872, 2075, 2767
Ppu21I	YACGTR	1 cut(s)	1973
PpuMI	RGGWCCY	2 cut(s)	340, 2729
Psp124BI	GAGCTC	1 cut(s)	234
Psp1406I	AACGTT	1 cut(s)	2833
Psp5II	RGGWCCY	2 cut(s)	340, 2729
Psp6I	CCWGG	8 cut(s)	1240, 1439, 1519, 1902, 2101, 2134, 2518, 2776
PspCI	CACGTG	1 cut(s)	1973
PspEI	GGTNACC	2 cut(s)	43, 863
PspGI	CCWGG	8 cut(s)	1240, 1439, 1519, 1902, 2101, 2134, 2518, 2776
PspN4I	GGNNCC	6 cut(s)	342, 757, 921, 1950, 1968, 2107
PspPPI	RGGWCCY	2 cut(s)	340, 2729
PstI	CTGCAG	2 cut(s)	564, 2253
PstNI	CAGNNNCTG	1 cut(s)	2519
PsuI	RGATCY	2 cut(s)	797, 1345
PsyI	GACNNNGTC	1 cut(s)	410
PvuII	CAGCTG	1 cut(s)	559
RsaI	GTAC	4 cut(s)	2002, 2022, 2295, 2678
RsaNI	GTAC	4 cut(s)	2001, 2021, 2294, 2677
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	9 cut(s)	713, 971, 1046, 1485, 1614, 1655, 1890, 2274, 2289
Sau3AI	GATC	8 cut(s)	252, 262, 797, 1093, 1345, 2223, 2329, 2590
SchI	GAGTC	8 cut(s)	94, 742, 1471, 1616, 1738, 1872, 2075, 2768
ScrFI	CCNGG	9 cut(s)	869, 1242, 1441, 1521, 1904, 2103, 2136, 2520, 2778
SduI	GDGCHC	6 cut(s)	191, 234, 354, 1179, 1677, 2385
SfaNI	GCATC	7 cut(s)	207, 315, 623, 651, 1003, 1546, 2500
SfcI	CTRYAG	7 cut(s)	560, 1228, 1332, 2030, 2249, 2259, 2733
Sfr274I	CTCGAG	1 cut(s)	335
SfuI	TTCGAA	1 cut(s)	245
SgrAI	CRCCGGYG	1 cut(s)	278
SinI	GGWCC	7 cut(s)	340, 701, 756, 1775, 1967, 2150, 2729
SlaI	CTCGAG	1 cut(s)	335
SmlI	CTYRAG	5 cut(s)	131, 335, 1431, 2214, 2288
SmoI	CTYRAG	5 cut(s)	131, 335, 1431, 2214, 2288
SpeI	ACTAGT	1 cut(s)	1862
SphI	GCATGC	1 cut(s)	2744
SseBI	AGGCCT	1 cut(s)	1660
SspI	AATATT	2 cut(s)	662, 817
SspMI	CTAG	8 cut(s)	24, 1091, 1182, 1221, 1263, 1532, 1863, 2163
SstI	GAGCTC	1 cut(s)	234
StuI	AGGCCT	1 cut(s)	1660
StyD4I	CCNGG	9 cut(s)	867, 1240, 1439, 1519, 1902, 2101, 2134, 2518, 2776
TaaI	ACNGT	7 cut(s)	383, 784, 1031, 1817, 2034, 2387, 2435
TaiI	ACGT	6 cut(s)	177, 670, 1674, 1975, 2299, 2836
TaqI	TCGA	4 cut(s)	111, 245, 336, 1755
TatI	WGTACW	1 cut(s)	2676
TauI	GCSGC	6 cut(s)	79, 82, 91, 184, 1075, 1693
TfiI	GAWTC	8 cut(s)	331, 620, 1274, 1377, 1389, 1768, 2255, 2303
Tru1I	TTAA	9 cut(s)	713, 971, 1046, 1485, 1614, 1655, 1890, 2274, 2289
Tru9I	TTAA	9 cut(s)	713, 971, 1046, 1485, 1614, 1655, 1890, 2274, 2289
TscAI	CASTG	7 cut(s)	525, 1036, 1260, 1653, 1968, 2491, 2770
TseFI	GTSAC	4 cut(s)	43, 863, 2407, 2718
TseI	GCWGC	7 cut(s)	136, 205, 286, 358, 556, 559, 1804
Tsp45I	GTSAC	4 cut(s)	43, 863, 2407, 2718
TspRI	CASTG	7 cut(s)	525, 1036, 1260, 1653, 1968, 2491, 2770
Tth111I	GACNNNGTC	1 cut(s)	410
Vha464I	CTTAAG	1 cut(s)	2288
VneI	GTGCAC	1 cut(s)	1673
VpaK11BI	GGWCC	7 cut(s)	340, 701, 756, 1775, 1967, 2150, 2729
XagI	CCTNNNNNAGG	1 cut(s)	2288
XapI	RAATTY	4 cut(s)	844, 1507, 1747, 2596
XbaI	TCTAGA	2 cut(s)	1090, 1220
XceI	RCATGY	4 cut(s)	1067, 2408, 2479, 2744
XhoI	CTCGAG	1 cut(s)	335
XmiI	GTMKAC	5 cut(s)	433, 766, 1298, 1550, 2029
XmnI	GAANNNNTTC	1 cut(s)	1594
XspI	CTAG	8 cut(s)	24, 1091, 1182, 1221, 1263, 1532, 1863, 2163
Zsp2I	ATGCAT	1 cut(s)	1018

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.