Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009992

Physical Location & Seq

Genomic Coordinates Forward (+)

1255971 .. 1262076

Gene Structure 6106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02510.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2592 bp

ATGGAGCTCTCTCGTGAAAACCCTAGACCTCTCGCTTTTCCGGCCACCAAGCCCATGCCGATTACCGACCTCGCTCCCAAGCCGCCGCCGCCGCCGACTCCGATTGTCGACCGCTACAAGGCGCTGCTCAAGCAGCGCGACGACGACCTGAGAGTATCCCCCGACGACGACGTGTCGCCGCCGAGCACGGAGGAGATTGTGCAGCTTTACGAGATGTTGTTGTCGGAGTTGGTTTTCAATTCGAAGCCGATTATCACCGATCTCACTATCATCGCCGGCGAGCAGCGAGACCACGGCAAGGGCATCGCCGACGCCATCTGCGCTCGGATTCTCGAGGTCCCAGTCGAGCACAAGCTGCCTTCACTATATCTTTTAGACAGTATCGTAAAGAACATTGGCCGAGACTATGTCAGATACTTCTCTTCCCGTCTCCCTGAGGTCTTTTGTGAGGCATACAGGCAAGTTCAACCCAACCAGCACTCTGCCATGCGCCACCTTTTTGGCACTTGGTCAACAGTGTTTCCTCCTTCAGTCCTTCGCAGGATCGAAGCGCAGCTGCAGTTTTCTCCACAAATGAACCAGCAATCATCAGGTTTACCTCCTATGAGAGCATCTGAATCTCCTCGGCCAGCGCATGGCATCCATGTCAATCCAAAATATTTACGTCAGTTGGAGACCTCAAATGTGGATAATGTTGGTCCCCAAAGACTAAGCTCAACGGGAACTATGAGTCATACAGATTTTCCCGTTGGGTCCAAACGGGTACAGCCATCTTCCGCTGTCAGACTTGCAAGATCTTCGTCACCTTCAAATATTGGCATTGATGAATATGAAGTAGAAAATTCTCCTAAAAGGTTTGGTGAGCGGGCATCTCCATCTAATTCTGTGTATGATTATAGAGCAATCAGAGATGAAGAGCTAAGTGAAAGGCGGAGAAAACATTATCTTGATGGTAGTCAGAACCGGTTAAATAATGGACTTGAACATCAAAGACCAAGAGCTTTGATTGATGCATATGGAAAAGACAGTGGGGATAGAAGTTTAAGTGATAAGCCTTTGCATGTTGGGCGGCTTAATGTAAATGGTCTAGATCACAAAGCAACTTCAATGGCGTGGCAGAATACTGAGGAGGATGAGTTTGATTGGAAATCTGTTGGCCCATCTATAACCAAGCACACTAGGAGTGATGATTTCTTTCCTTCAAATGTTCCACATTCTAGAAGCTACAGGCCCAGGCCTGGCCTCGGAACACTGAATGCAAGCTCCTTAGATTCAGATATCGGGAGTACTTGGTCTACTCAGGCATACCTACCTTCAGAACAGTCCTCTGTAGTTGCTGAAGATTCAGTCCCCCCGCTCTCTTTCAGTCGTGGACTCACGGGTAGATTCCAGTCCGACATAAATCATAATCAGGGTTCTCGCCACCCTCAAGAACCATGGAATATGCCTTTTCATCCCTCTCAGCCTTCACAGACTCTTCTTAATACCAAAGAAATAGGTAGGAATTTCCAGATGCCTATATCACTAGGTGGTGAGAAAGTGTCTACTGATGTTGACGGGCGACTTCACGGACCAACATCAAGAATGGGTTCTGGTGCTGACTTTGTTAATGCTGACTCTCGCTTAGCTATACCAGTGTCAGTGGGTGTAAGGCCTCCAGTAAACGTGCACAATTCTCACCCCCCGCCTGTGCATTCAATTTTTCCATTGCCGAACCAGAGGAGTCAGTACGGTTTCATAAATTCTGTTGACAACATTAAAAATCAAGGTCCATACAAGTCTATGTATATGCCTGAGCAGCAGTTGGATGGTTATGAAAACAAGGAGTTGGGTTTGGCAAAGCTAAGTCAGTTGACTAGTCAGAATGCCAGACTCATACCTGTTAATCAGAGAAACCAGGCTCAGGTCAGTCCTTTCCAACCACAATTTCATCCGCATCAGGAGCCACCTTATTCAGCGGCACCACGTGGATACAATTTGCAAGGCCAGGGTGGTGCCGGTATAGCAAATCCTGTACCTCGTGTACAGTTGGGCTTACCTACTCACTATACTCCAAATGCTTTGCAACATTTGCGAGGGGACTCCTTGCCGCCTCTACCGACCGGTCCCCCTCCTCCCATACATGGTGTATTTCCTGGTCTAAAGGCTGGTCCAGTAGTCTCTAGCAACCAGCAAGGGAGTTCTTATACCGGTTTGATTAGTTCTCTCATGGCTCAAGGTGTGATCTCATTGACAAATCAAAGTGCCCTGCAGGATTCTGTAGGAGTTGAGTTTAATGCGGACCTTCTCAAGGTGCGTCACGAATCTGCAATAACTGCTCTGTATCATGATCTCCCAAGACAATGCACAACCTGTGGTCTCCGGTTCAAGTGCCAAGAGGAGCACCGTAGTCATATGGATTGGCATGTGACGAAGAACAGGATGTCCAAAAACCGTAAGCAGAAGCCCTCTCTGCGGAAAAGAAGAGTGATGAAGAAATGGCTGTTCCGGCTGATGAGGATCAGAATTCATGTGCGTTATGTGGGGAGCCTTTTGATGATTTTTATAGTGATGAGACAGAGGAGTGGATGTATAAAGGTGCTGTGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

864

Amino Acids

96.44

Weight (kDa)

9.45

Isoelectric Point (pI)

57.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf_PCFS4	PF23228	692 - 758	8.2e-30	PCFS4 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04885
fragaria_vesca	FvH4_3g02510 FvH4_3g02510 FvH4_3g02510 FvH4_3g02510
malus_domestica	MD05G1342300.v1.1 MD10G1315900.v1.1
prunus_persica	Prupe.4G024700_v2.0.a1
pyrus_communis	pycom05g31160 pycom10g26810
rosa_chinensis	RchiOBHm_Chr5g0003821
rosa_laevigata	RLG00000031178
rosa_multiflora	Rmu_sc0004212.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072170
rosa_rugosa	Rorug04G0406900 Rorug04G0407000
rosa_samantha	Rh5AG034400 Rh5BG032700 Rh5CG036800 Rh5DG033100
rosa_wichuraiana	Rw5G003150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	1960, 1994
AccB7I	CCANNNNNTGG	1 cut(s)	635
AccBSI	CCGCTC	2 cut(s)	865, 1357
AccI	GTMKAC	3 cut(s)	108, 1295, 1544
AccII	CGCG	1 cut(s)	138
AclWI	GGATC	2 cut(s)	551, 2507
AcoI	YGGCCR	3 cut(s)	42, 397, 626
AcsI	RAATTY	4 cut(s)	841, 1504, 1741, 2505
AcuI	CTGAAG	3 cut(s)	513, 1299, 1359
AcvI	CACGTG	1 cut(s)	1967
AcyI	GRCGYC	1 cut(s)	312
AdeI	CACNNNGTG	2 cut(s)	1529, 1967
AfaI	GTAC	6 cut(s)	765, 1288, 1730, 2016, 2025, 2587
AfiI	CCNNNNNNNGG	9 cut(s)	118, 298, 635, 1238, 1244, 1903, 2123, 2290, 2454
AflIII	ACRYGT	1 cut(s)	171
AgeI	ACCGGT	3 cut(s)	963, 2102, 2189
AgsI	TTSAA	8 cut(s)	238, 467, 810, 983, 1107, 1203, 1698, 2368
AhdI	GACNNNNNGTC	1 cut(s)	172
AhlI	ACTAGT	1 cut(s)	1856
AjiI	CACGTC	1 cut(s)	172
AjnI	CCWGG	5 cut(s)	1232, 1237, 1896, 1986, 2134
AjuI	GAANNNNNNNTTGG	2 cut(s)	1911, 1943
AloI	GAACNNNNNNTCC	2 cut(s)	2408, 2440
Alw21I	GWGCWC	5 cut(s)	9, 188, 351, 1671, 2385
Alw26I	GTCTC	7 cut(s)	282, 396, 434, 668, 2164, 2363, 2548
Alw44I	GTGCAC	1 cut(s)	1667
AlwI	GGATC	2 cut(s)	551, 2507
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	9 cut(s)	42, 397, 626, 1156, 1229, 1235, 1240, 1652, 1984
ApaLI	GTGCAC	1 cut(s)	1667
ApeKI	GCWGC	8 cut(s)	124, 133, 202, 283, 355, 553, 556, 1798
ApoI	RAATTY	4 cut(s)	841, 1504, 1741, 2505
AsiGI	ACCGGT	3 cut(s)	963, 2102, 2189
Asp700I	GAANNNNTTC	1 cut(s)	1588
AspLEI	GCGC	6 cut(s)	124, 138, 323, 492, 553, 634
AsuHPI	GGTGA	5 cut(s)	247, 795, 872, 1544, 1670
AsuII	TTCGAA	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	332
AvaII	GGWCC	8 cut(s)	337, 698, 753, 1571, 1769, 2105, 2150, 2281
AxyI	CCTNAGG	1 cut(s)	435
BaeGI	GKGCMC	2 cut(s)	1671, 2248
BanI	GGYRCC	2 cut(s)	1960, 1994
BanII	GRGCYC	1 cut(s)	9
BauI	CACGAG	2 cut(s)	12, 2019
BbrPI	CACGTG	1 cut(s)	1967
Bbv12I	GWGCWC	5 cut(s)	9, 188, 351, 1671, 2385
BbvI	GCAGC	8 cut(s)	111, 145, 214, 295, 342, 543, 565, 1810
BccI	CCATC	6 cut(s)	323, 778, 883, 944, 1168, 1802
BceAI	ACGGC	1 cut(s)	310
BcgI	CGANNNNNNTGC	4 cut(s)	286, 320, 780, 814
BciT130I	CCWGG	5 cut(s)	1234, 1239, 1898, 1988, 2136
BciVI	GTATCC	2 cut(s)	166, 1964
BcoDI	GTCTC	7 cut(s)	282, 396, 434, 668, 2164, 2363, 2548
BcuI	ACTAGT	1 cut(s)	1856
BfaI	CTAG	7 cut(s)	24, 1088, 1179, 1218, 1526, 1857, 2163
BfmI	CTRYAG	5 cut(s)	557, 1225, 1329, 2249, 2259
BfoI	RGCGCY	1 cut(s)	125
BfuI	GTATCC	2 cut(s)	166, 1964
BglII	AGATCT	1 cut(s)	794
BlpI	GCTNAGC	1 cut(s)	1624
BmcAI	AGTACT	1 cut(s)	1288
Bme1390I	CCNGG	5 cut(s)	1234, 1239, 1898, 1988, 2136
Bme18I	GGWCC	8 cut(s)	337, 698, 753, 1571, 1769, 2105, 2150, 2281
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmeT110I	CYCGRG	1 cut(s)	332
BmgBI	CACGTC	1 cut(s)	172
BmiI	GGNNCC	8 cut(s)	339, 700, 754, 1944, 1962, 1996, 2107, 2528
BmrFI	CCNGG	5 cut(s)	1234, 1239, 1898, 1988, 2136
BmrI	ACTGGG	1 cut(s)	335
BmsI	GCATC	7 cut(s)	312, 620, 648, 878, 1000, 1503, 1945
BmuI	ACTGGG	1 cut(s)	335
BpmI	CTGGAG	1 cut(s)	1641
Bpu10I	CCTNAGC	2 cut(s)	1794, 1902
Bpu1102I	GCTNAGC	1 cut(s)	1624
Bpu14I	TTCGAA	1 cut(s)	242
BpuEI	CTTGAG	4 cut(s)	113, 1413, 2199, 2273
BsaAI	YACGTR	1 cut(s)	1967
BsaBI	GATNNNNATC	1 cut(s)	2498
BsaHI	GRCGYC	1 cut(s)	312
BsaI	GGTCTC	3 cut(s)	282, 668, 2363
BsaJI	CCNNGG	6 cut(s)	292, 623, 1232, 1243, 1436, 1987
BsaWI	WCCGGW	4 cut(s)	963, 2102, 2189, 2361
BsaXI	ACNNNNNCTCC	4 cut(s)	1121, 1151, 2554, 2584
Bsc4I	CCNNNNNNNGG	9 cut(s)	118, 298, 635, 1238, 1244, 1903, 2123, 2290, 2454
Bse118I	RCCGGY	5 cut(s)	275, 963, 1997, 2102, 2189
Bse1I	ACTGG	5 cut(s)	341, 1390, 1634, 1658, 2153
Bse21I	CCTNAGG	1 cut(s)	435
Bse3DI	GCAATG	1 cut(s)	1706
Bse8I	GATNNNNATC	1 cut(s)	2498
BseBI	CCWGG	5 cut(s)	1234, 1239, 1898, 1988, 2136
BseDI	CCNNGG	6 cut(s)	292, 623, 1232, 1243, 1436, 1987
BseGI	GGATG	7 cut(s)	639, 1138, 1453, 1813, 1930, 2427, 2573
BseJI	GATNNNNATC	1 cut(s)	2498
BseLI	CCNNNNNNNGG	9 cut(s)	118, 298, 635, 1238, 1244, 1903, 2123, 2290, 2454
BseMI	GCAATG	1 cut(s)	1706
BseMII	CTCAG	7 cut(s)	140, 426, 1116, 1313, 1475, 1785, 1916
BseNI	ACTGG	5 cut(s)	341, 1390, 1634, 1658, 2153
BseRI	GAGGAG	7 cut(s)	206, 612, 1142, 1735, 2103, 2393, 2575
BseSI	GKGCMC	2 cut(s)	1671, 2248
BseXI	GCAGC	8 cut(s)	111, 145, 214, 295, 342, 543, 565, 1810
BsgI	GTGCAG	1 cut(s)	221
Bsh1236I	CGCG	1 cut(s)	138
Bsh1285I	CGRYCG	2 cut(s)	112, 2103
BshFI	GGCC	9 cut(s)	44, 399, 628, 1158, 1231, 1237, 1242, 1654, 1986
BshNI	GGYRCC	2 cut(s)	1960, 1994
BshTI	ACCGGT	3 cut(s)	963, 2102, 2189
BsiEI	CGRYCG	2 cut(s)	112, 2103
BsiHKAI	GWGCWC	5 cut(s)	9, 188, 351, 1671, 2385
BsiHKCI	CYCGRG	1 cut(s)	332
BsiSI	CCGG	8 cut(s)	41, 276, 964, 1998, 2103, 2190, 2362, 2488
BslFI	GGGAC	5 cut(s)	323, 684, 1334, 2091, 2093
BslI	CCNNNNNNNGG	9 cut(s)	118, 298, 635, 1238, 1244, 1903, 2123, 2290, 2454
BsmAI	GTCTC	7 cut(s)	282, 396, 434, 668, 2164, 2363, 2548
BsmBI	CGTCTC	1 cut(s)	434
BsmFI	GGGAC	5 cut(s)	323, 684, 1334, 2091, 2093
BsmI	GAATGC	3 cut(s)	1261, 1693, 1870
BsnI	GGCC	9 cut(s)	44, 399, 628, 1158, 1231, 1237, 1242, 1654, 1986
Bso31I	GGTCTC	3 cut(s)	282, 668, 2363
BsoBI	CYCGRG	1 cut(s)	332
Bsp119I	TTCGAA	1 cut(s)	242
Bsp1286I	GDGCHC	6 cut(s)	9, 188, 351, 1671, 2248, 2385
Bsp1407I	TGTACA	1 cut(s)	2023
Bsp143I	GATC	7 cut(s)	259, 543, 794, 1090, 2223, 2329, 2499
Bsp1720I	GCTNAGC	1 cut(s)	1624
Bsp19I	CCATGG	1 cut(s)	1436
BspANI	GGCC	9 cut(s)	44, 399, 628, 1158, 1231, 1237, 1242, 1654, 1986
BspCNI	CTCAG	7 cut(s)	141, 427, 1117, 1312, 1474, 1786, 1915
BspFNI	CGCG	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	2326
BspLI	GGNNCC	8 cut(s)	339, 700, 754, 1944, 1962, 1996, 2107, 2528
BspMAI	CTGCAG	2 cut(s)	561, 2253
BspPI	GGATC	2 cut(s)	551, 2507
BspQI	GCTCTTC	1 cut(s)	909
BspT104I	TTCGAA	1 cut(s)	242
BspT107I	GGYRCC	2 cut(s)	1960, 1994
BspTNI	GGTCTC	3 cut(s)	282, 668, 2363
BsrBI	CCGCTC	2 cut(s)	865, 1357
BsrDI	GCAATG	1 cut(s)	1706
BsrFI	RCCGGY	5 cut(s)	275, 963, 1997, 2102, 2189
BsrGI	TGTACA	1 cut(s)	2023
BsrI	ACTGG	5 cut(s)	341, 1390, 1634, 1658, 2153
BssAI	RCCGGY	5 cut(s)	275, 963, 1997, 2102, 2189
BssECI	CCNNGG	6 cut(s)	292, 623, 1232, 1243, 1436, 1987
BssMI	GATC	7 cut(s)	259, 543, 794, 1090, 2223, 2329, 2499
BssNI	GRCGYC	1 cut(s)	312
BssSI	CACGAG	2 cut(s)	12, 2019
BssT1I	CCWWGG	1 cut(s)	1436
Bst2BI	CACGAG	2 cut(s)	12, 2019
Bst2UI	CCWGG	5 cut(s)	1234, 1239, 1898, 1988, 2136
Bst4CI	ACNGT	8 cut(s)	380, 517, 1028, 1323, 1733, 2028, 2387, 2435
Bst6I	CTCTTC	4 cut(s)	427, 909, 1482, 2458
BstACI	GRCGYC	1 cut(s)	312
BstAPI	GCANNNNNTGC	3 cut(s)	355, 2071, 2315
BstAUI	TGTACA	1 cut(s)	2023
BstBAI	YACGTR	1 cut(s)	1967
BstBI	TTCGAA	1 cut(s)	242
BstC8I	GCNNGC	5 cut(s)	277, 281, 630, 867, 1261
BstDSI	CCRYGG	2 cut(s)	292, 1436
BstENI	CCTNNNNNAGG	1 cut(s)	2288
BstF5I	GGATG	7 cut(s)	639, 1138, 1453, 1813, 1930, 2427, 2573
BstFNI	CGCG	1 cut(s)	138
BstH2I	RGCGCY	1 cut(s)	125
BstHHI	GCGC	6 cut(s)	124, 138, 323, 492, 553, 634
BstKTI	GATC	7 cut(s)	262, 546, 797, 1093, 2226, 2332, 2502
BstMAI	GTCTC	7 cut(s)	282, 396, 434, 668, 2164, 2363, 2548
BstMBI	GATC	7 cut(s)	259, 543, 794, 1090, 2223, 2329, 2499
BstMCI	CGRYCG	2 cut(s)	112, 2103
BstNI	CCWGG	5 cut(s)	1234, 1239, 1898, 1988, 2136
BstNSI	RCATGY	2 cut(s)	1064, 2408
BstSCI	CCNGG	5 cut(s)	1232, 1237, 1896, 1986, 2134
BstSFI	CTRYAG	5 cut(s)	557, 1225, 1329, 2249, 2259
BstSLI	GKGCMC	2 cut(s)	1671, 2248
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	8 cut(s)	111, 145, 214, 295, 342, 543, 565, 1810
BstX2I	RGATCY	1 cut(s)	794
BstXI	CCANNNNNNTGG	1 cut(s)	500
BstYI	RGATCY	1 cut(s)	794
Bsu36I	CCTNAGG	1 cut(s)	435
BsuI	GTATCC	2 cut(s)	166, 1964
BsuRI	GGCC	9 cut(s)	44, 399, 628, 1158, 1231, 1237, 1242, 1654, 1986
BtgI	CCRYGG	2 cut(s)	292, 1436
BtgZI	GCGATG	2 cut(s)	256, 289
BtrI	CACGTC	1 cut(s)	172
BtsCI	GGATG	7 cut(s)	639, 1138, 1453, 1813, 1930, 2427, 2573
BtsIMutI	CAGTG	5 cut(s)	522, 1033, 1250, 1641, 1647
Cac8I	GCNNGC	5 cut(s)	277, 281, 630, 867, 1261
CciI	TCATGA	1 cut(s)	2326
CfoI	GCGC	6 cut(s)	124, 138, 323, 492, 553, 634
Cfr10I	RCCGGY	5 cut(s)	275, 963, 1997, 2102, 2189
CseI	GACGC	2 cut(s)	320, 2285
Csp6I	GTAC	6 cut(s)	764, 1287, 1729, 2015, 2024, 2586
CspAI	ACCGGT	3 cut(s)	963, 2102, 2189
CviQI	GTAC	6 cut(s)	764, 1287, 1729, 2015, 2024, 2586
DpnI	GATC	7 cut(s)	261, 545, 796, 1092, 2225, 2331, 2501
DpnII	GATC	7 cut(s)	259, 543, 794, 1090, 2223, 2329, 2499
DraIII	CACNNNGTG	2 cut(s)	1529, 1967
DriI	GACNNNNNGTC	1 cut(s)	172
EaeI	YGGCCR	3 cut(s)	42, 397, 626
Eam1104I	CTCTTC	4 cut(s)	427, 909, 1482, 2458
Eam1105I	GACNNNNNGTC	1 cut(s)	172
EarI	CTCTTC	4 cut(s)	427, 909, 1482, 2458
EciI	GGCGGA	1 cut(s)	946
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	1436
Eco147I	AGGCCT	2 cut(s)	1237, 1654
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	3 cut(s)	282, 668, 2363
Eco32I	GATATC	1 cut(s)	1279
Eco47I	GGWCC	8 cut(s)	337, 698, 753, 1571, 1769, 2105, 2150, 2281
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	3 cut(s)	513, 1299, 1359
Eco72I	CACGTG	1 cut(s)	1967
Eco81I	CCTNAGG	1 cut(s)	435
Eco88I	CYCGRG	1 cut(s)	332
EcoICRI	GAGCTC	1 cut(s)	7
EcoNI	CCTNNNNNAGG	1 cut(s)	2288
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRI	GAATTC	1 cut(s)	2505
EcoRII	CCWGG	5 cut(s)	1232, 1237, 1896, 1986, 2134
EcoRV	GATATC	1 cut(s)	1279
EcoT14I	CCWWGG	1 cut(s)	1436
EcoT22I	ATGCAT	1 cut(s)	1015
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	1436
Esp3I	CGTCTC	1 cut(s)	434
FaqI	GGGAC	5 cut(s)	323, 684, 1334, 2091, 2093
FauI	CCCGC	3 cut(s)	858, 1362, 1692
FauNDI	CATATG	2 cut(s)	1015, 2394
FblI	GTMKAC	3 cut(s)	108, 1295, 1544
FokI	GGATG	7 cut(s)	626, 1145, 1440, 1820, 1917, 2434, 2580
FriOI	GRGCYC	1 cut(s)	9
FspBI	CTAG	7 cut(s)	24, 1088, 1179, 1218, 1526, 1857, 2163
GlaI	GCGC	6 cut(s)	123, 137, 322, 491, 552, 633
GsuI	CTGGAG	1 cut(s)	1641
HaeII	RGCGCY	1 cut(s)	125
HaeIII	GGCC	9 cut(s)	44, 399, 628, 1158, 1231, 1237, 1242, 1654, 1986
HapII	CCGG	8 cut(s)	41, 276, 964, 1998, 2103, 2190, 2362, 2488
HgaI	GACGC	2 cut(s)	320, 2285
HhaI	GCGC	6 cut(s)	124, 138, 323, 492, 553, 634
Hin1I	GRCGYC	1 cut(s)	312
Hin6I	GCGC	6 cut(s)	122, 136, 321, 490, 551, 632
HinP1I	GCGC	6 cut(s)	122, 136, 321, 490, 551, 632
HincII	GTYRAC	5 cut(s)	109, 513, 1555, 1750, 1854
HindII	GTYRAC	5 cut(s)	109, 513, 1555, 1750, 1854
HpaII	CCGG	8 cut(s)	41, 276, 964, 1998, 2103, 2190, 2362, 2488
HphI	GGTGA	5 cut(s)	247, 795, 872, 1544, 1670
Hpy99I	CGWCG	6 cut(s)	143, 146, 167, 170, 173, 314
HpyAV	CCTTC	8 cut(s)	369, 537, 545, 816, 1209, 1323, 1476, 2294
HpyCH4III	ACNGT	8 cut(s)	380, 517, 1028, 1323, 1733, 2028, 2387, 2435
HpyCH4IV	ACGT	4 cut(s)	171, 664, 1665, 1966
HpySE526I	ACGT	4 cut(s)	171, 664, 1665, 1966
Hsp92I	GRCGYC	1 cut(s)	312
HspAI	GCGC	6 cut(s)	122, 136, 321, 490, 551, 632
KroI	GCCGGC	1 cut(s)	275
KroNI	GCCGGC	1 cut(s)	277
Kzo9I	GATC	7 cut(s)	259, 543, 794, 1090, 2223, 2329, 2499
LguI	GCTCTTC	1 cut(s)	909
LmnI	GCTCC	6 cut(s)	4, 79, 1268, 1942, 2380, 2526
Lsp1109I	GCAGC	8 cut(s)	111, 145, 214, 295, 342, 543, 565, 1810
LweI	GCATC	7 cut(s)	312, 620, 648, 878, 1000, 1503, 1945
MaeI	CTAG	7 cut(s)	24, 1088, 1179, 1218, 1526, 1857, 2163
MaeII	ACGT	4 cut(s)	171, 664, 1665, 1966
MaeIII	GTNAC	3 cut(s)	801, 2297, 2407
MalI	GATC	7 cut(s)	261, 545, 796, 1092, 2225, 2331, 2501
MbiI	CCGCTC	2 cut(s)	865, 1357
MboI	GATC	7 cut(s)	259, 543, 794, 1090, 2223, 2329, 2499
MboII	GAAGA	9 cut(s)	414, 765, 789, 926, 1352, 1469, 2425, 2475, 2485
MflI	RGATCY	1 cut(s)	794
MhlI	GDGCHC	6 cut(s)	9, 188, 351, 1671, 2248, 2385
MlyI	GAGTC	8 cut(s)	91, 739, 1368, 1468, 1610, 1732, 1866, 2075
MmeI	TCCRAC	5 cut(s)	204, 651, 1419, 1785, 1942
Mph1103I	ATGCAT	1 cut(s)	1015
MreI	CGCCGGCG	1 cut(s)	275
MroNI	GCCGGC	1 cut(s)	275
MroXI	GAANNNNTTC	1 cut(s)	1588
MseI	TTAA	8 cut(s)	968, 1043, 1074, 1482, 1608, 1758, 1884, 2274
MspA1I	CMGCKG	3 cut(s)	556, 779, 1958
MspI	CCGG	8 cut(s)	41, 276, 964, 1998, 2103, 2190, 2362, 2488
MspR9I	CCNGG	5 cut(s)	1234, 1239, 1898, 1988, 2136
Mva1269I	GAATGC	3 cut(s)	1261, 1693, 1870
MvaI	CCWGG	5 cut(s)	1234, 1239, 1898, 1988, 2136
MvnI	CGCG	1 cut(s)	138
NaeI	GCCGGC	1 cut(s)	277
NcoI	CCATGG	1 cut(s)	1436
NdeI	CATATG	2 cut(s)	1015, 2394
NdeII	GATC	7 cut(s)	259, 543, 794, 1090, 2223, 2329, 2499
NgoMIV	GCCGGC	1 cut(s)	275
NlaIV	GGNNCC	8 cut(s)	339, 700, 754, 1944, 1962, 1996, 2107, 2528
NmeAIII	GCCGAG	3 cut(s)	207, 425, 604
NmuCI	GTSAC	3 cut(s)	801, 2297, 2407
NsiI	ATGCAT	1 cut(s)	1015
NspI	RCATGY	2 cut(s)	1064, 2408
NspV	TTCGAA	1 cut(s)	242
PaeR7I	CTCGAG	1 cut(s)	332
PagI	TCATGA	1 cut(s)	2326
PceI	AGGCCT	2 cut(s)	1237, 1654
PciSI	GCTCTTC	1 cut(s)	909
PctI	GAATGC	3 cut(s)	1261, 1693, 1870
PdiI	GCCGGC	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	1588
PfeI	GAWTC	7 cut(s)	328, 617, 1271, 1343, 1386, 2255, 2303
PflFI	GACNNNGTC	1 cut(s)	407
PflMI	CCANNNNNTGG	1 cut(s)	635
PinAI	ACCGGT	3 cut(s)	963, 2102, 2189
PleI	GAGTC	8 cut(s)	91, 738, 1368, 1468, 1610, 1731, 1866, 2075
PmaCI	CACGTG	1 cut(s)	1967
PmlI	CACGTG	1 cut(s)	1967
PpsI	GAGTC	8 cut(s)	91, 738, 1368, 1468, 1610, 1731, 1866, 2075
Ppu21I	YACGTR	1 cut(s)	1967
PpuMI	RGGWCCY	1 cut(s)	337
Psp124BI	GAGCTC	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	337
Psp6I	CCWGG	5 cut(s)	1232, 1237, 1896, 1986, 2134
PspCI	CACGTG	1 cut(s)	1967
PspGI	CCWGG	5 cut(s)	1232, 1237, 1896, 1986, 2134
PspN4I	GGNNCC	8 cut(s)	339, 700, 754, 1944, 1962, 1996, 2107, 2528
PspPPI	RGGWCCY	1 cut(s)	337
PstI	CTGCAG	2 cut(s)	561, 2253
PsuI	RGATCY	1 cut(s)	794
PsyI	GACNNNGTC	1 cut(s)	407
PvuII	CAGCTG	1 cut(s)	556
RsaI	GTAC	6 cut(s)	765, 1288, 1730, 2016, 2025, 2587
RsaNI	GTAC	6 cut(s)	764, 1287, 1729, 2015, 2024, 2586
SacI	GAGCTC	1 cut(s)	9
SalI	GTCGAC	1 cut(s)	107
SapI	GCTCTTC	1 cut(s)	909
SaqAI	TTAA	8 cut(s)	968, 1043, 1074, 1482, 1608, 1758, 1884, 2274
Sau3AI	GATC	7 cut(s)	259, 543, 794, 1090, 2223, 2329, 2499
SbfI	CCTGCAGG	1 cut(s)	2253
ScaI	AGTACT	1 cut(s)	1288
SchI	GAGTC	8 cut(s)	91, 739, 1368, 1468, 1610, 1732, 1866, 2075
ScrFI	CCNGG	5 cut(s)	1234, 1239, 1898, 1988, 2136
SdaI	CCTGCAGG	1 cut(s)	2253
SduI	GDGCHC	6 cut(s)	9, 188, 351, 1671, 2248, 2385
SfaNI	GCATC	7 cut(s)	312, 620, 648, 878, 1000, 1503, 1945
SfcI	CTRYAG	5 cut(s)	557, 1225, 1329, 2249, 2259
Sfr274I	CTCGAG	1 cut(s)	332
SfuI	TTCGAA	1 cut(s)	242
SgrAI	CRCCGGYG	1 cut(s)	275
SinI	GGWCC	8 cut(s)	337, 698, 753, 1571, 1769, 2105, 2150, 2281
SlaI	CTCGAG	1 cut(s)	332
SmlI	CTYRAG	5 cut(s)	128, 332, 1428, 2214, 2288
SmoI	CTYRAG	5 cut(s)	128, 332, 1428, 2214, 2288
SpeI	ACTAGT	1 cut(s)	1856
Sse8387I	CCTGCAGG	1 cut(s)	2253
SseBI	AGGCCT	2 cut(s)	1237, 1654
SspI	AATATT	2 cut(s)	659, 814
SspMI	CTAG	7 cut(s)	24, 1088, 1179, 1218, 1526, 1857, 2163
SstI	GAGCTC	1 cut(s)	9
StuI	AGGCCT	2 cut(s)	1237, 1654
StyD4I	CCNGG	5 cut(s)	1232, 1237, 1896, 1986, 2134
StyI	CCWWGG	1 cut(s)	1436
TaaI	ACNGT	8 cut(s)	380, 517, 1028, 1323, 1733, 2028, 2387, 2435
TaiI	ACGT	4 cut(s)	174, 667, 1668, 1969
TaqI	TCGA	5 cut(s)	108, 242, 333, 345, 546
TatI	WGTACW	3 cut(s)	1286, 2023, 2585
TauI	GCSGC	8 cut(s)	85, 88, 91, 94, 181, 1072, 1961, 2092
TfiI	GAWTC	7 cut(s)	328, 617, 1271, 1343, 1386, 2255, 2303
Tru1I	TTAA	8 cut(s)	968, 1043, 1074, 1482, 1608, 1758, 1884, 2274
Tru9I	TTAA	8 cut(s)	968, 1043, 1074, 1482, 1608, 1758, 1884, 2274
TscAI	CASTG	5 cut(s)	522, 1033, 1257, 1641, 1647
TseFI	GTSAC	3 cut(s)	801, 2297, 2407
TseI	GCWGC	8 cut(s)	124, 133, 202, 283, 355, 553, 556, 1798
Tsp45I	GTSAC	3 cut(s)	801, 2297, 2407
TspGWI	ACGGA	2 cut(s)	203, 1584
TspRI	CASTG	5 cut(s)	522, 1033, 1257, 1641, 1647
Tth111I	GACNNNGTC	1 cut(s)	407
Van91I	CCANNNNNTGG	1 cut(s)	635
VneI	GTGCAC	1 cut(s)	1667
VpaK11BI	GGWCC	8 cut(s)	337, 698, 753, 1571, 1769, 2105, 2150, 2281
XagI	CCTNNNNNAGG	1 cut(s)	2288
XapI	RAATTY	4 cut(s)	841, 1504, 1741, 2505
XbaI	TCTAGA	2 cut(s)	1087, 1217
XceI	RCATGY	2 cut(s)	1064, 2408
XhoI	CTCGAG	1 cut(s)	332
XmiI	GTMKAC	3 cut(s)	108, 1295, 1544
XmnI	GAANNNNTTC	1 cut(s)	1588
XspI	CTAG	7 cut(s)	24, 1088, 1179, 1218, 1526, 1857, 2163
ZrmI	AGTACT	1 cut(s)	1288
Zsp2I	ATGCAT	1 cut(s)	1015

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.