Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003907

Physical Location & Seq

Genomic Coordinates Reverse (-)

6107112 .. 6109176

Gene Structure 2065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G09670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCCACCGAAACCCAAATCCGAATCGGAGTAATGGGTTGCGCCGATATCGCTCGAAAAGTCTCTCGAGCAATCCACCTCGCTCCCAACGCCACAATCTCCGGCGTAGCAAGCCGGTCTTTAGAAAAAGCCAAAGCCTTTGCCACCGCCAATAACTACCCAGAATCAACCAAAATCCACGGCTCTTACGAATCTCTTCTCGAAGATCCAGAGATCGATGCGCTCTATGTTCCTCTCCCCACTAGTCTCCACGTTGAGTGGGCTATTAAAGCAGCTGAGAAAGGGAAACATATCCTTTTGGAGAAGCCTGTTGCTATGAACGTAACTGAGTTTGATAAGATTGTTGATGCTTGTGAAGCTAATGGTGTTCAGATTATGGATGGTACTATGTGGGTTCATAATCCTAGAACTGCTTTGCTTAAAGAGTTTCTTTCTGATTCTGAACGTTTTGGTCAGCTTAAAACTGTACAGAGTTGTTTCTCATTTGCTGGAGATGAAGATTTTCTTAAAAACGATATCCGTGTGAAACCTGGTCTTGACGGGCTTGGTGCGCTAGGAGATGCGGGGTGGTACGCGATCAGAGCAACTCTTTTAGCTAATAACTTTGAGCTTCCGAAAACTGTGACTGCTTTCCCCGGTGCTGTGTTGAATGAAGCAGGAGTGATACTTTCCTGTGGAGCATCTTTGAGTTGGGAAGATGGACGAACTGCAACTATATATTGTTCATTCTTGGCTAACTTAACAATGGAGATAACTGCCATTGGAACGAAAGGCACACTCCGTGTACACGACTTCATTATCCCGTATAAGGAGACTGAGGCGTCGTTTACCACGAGCACTAAAGCTTGGTTCAATGACCTTGTGACTGCGTGGGTTAGTCCCCCGAGTGAGCATACGGTTAAGACAGAGCTTCCACAAGAGGCATGTATGGTGAGAGAGTTTGCTCGATTGGTTGGAGAAATCAAGAACAATGGTGCAAAGCCTGATGGGTACTGGCCTAGTATTAGCCGAAAGACGCAGCTAGTGGTTGATGCTGTTAAAGAGTCTGTTGATAAAAACTATCAACAGATTAGTCTCTCTGGTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GFO_IDH_MocA

Protein Analysis

362

Amino Acids

39.56

Weight (kDa)

5.61

Isoelectric Point (pI)

29.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GFO_IDH_MocA	PF01408	7 - 126	1.3e-23	Oxidoreductase family, NAD-binding Rossmann fold
GFO_IDH_MocA_C3	PF22725	146 - 261	7.3e-12	GFO/IDH/MocA C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09670
fragaria_vesca	FvH4_1g28600 FvH4_2g12650
malus_domestica	MD09G1265700.v1.1 MD09G1265900.v1.1 MD10G1042200.v1.1 MD17G1262300.v1.1
prunus_persica	Prupe.3G163700_v2.0.a1 Prupe.8G046300_v2.0.a1
pyrus_communis	pycom09g17920 pycom17g26220
rosa_chinensis	RchiOBHm_Chr3g0492491 RchiOBHm_Chr6g0273321
rosa_laevigata	RLG00000013623 RLG00000022763
rosa_multiflora	Rmu_sc0000239.1_g000005 Rmu_sc0000971.1_g000009 Rmu_sc0010088.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392240 Rroxscaffold_7G00195440
rosa_rugosa	Rorug03G0254000 Rorug03G0254200 Rorug03G0254300 Rorug06G0074100
rosa_samantha	Rh3AG304600 Rh3BG340500 Rh3CG337900 Rh3DG339700 Rh6AG189400 Rh6BG192600 Rh6CG192600 Rh6DG184100
rosa_wichuraiana	Rw3G026830 Rw6G016480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	820
AccII	CGCG	1 cut(s)	575
AciI	CCGC	2 cut(s)	147, 563
AclI	AACGTT	1 cut(s)	445
AclWI	GGATC	1 cut(s)	200
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	821
AdeI	CACNNNGTG	1 cut(s)	782
AfaI	GTAC	5 cut(s)	385, 468, 572, 786, 992
AfiI	CCNNNNNNNGG	1 cut(s)	808
AgsI	TTSAA	2 cut(s)	649, 853
AhlI	ACTAGT	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	8 cut(s)	275, 359, 457, 596, 610, 845, 910, 1021
AluI	AGCT	8 cut(s)	275, 359, 457, 596, 610, 845, 910, 1021
Alw21I	GWGCWC	1 cut(s)	839
Alw26I	GTCTC	4 cut(s)	67, 251, 806, 1079
AlwI	GGATC	1 cut(s)	200
Ama87I	CYCGRG	2 cut(s)	66, 883
AoxI	GGCC	2 cut(s)	3, 995
ApeKI	GCWGC	2 cut(s)	272, 1018
Asp700I	GAANNNNTTC	2 cut(s)	195, 501
AspLEI	GCGC	3 cut(s)	44, 223, 553
AsuC2I	CCSGG	1 cut(s)	636
AsuHPI	GGTGA	1 cut(s)	943
AvaI	CYCGRG	2 cut(s)	66, 883
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	832
Bbv12I	GWGCWC	1 cut(s)	839
BbvI	GCAGC	2 cut(s)	284, 1030
BccI	CCATC	3 cut(s)	374, 692, 980
BceAI	ACGGC	1 cut(s)	196
BciT130I	CCWGG	1 cut(s)	531
BcnI	CCSGG	1 cut(s)	636
BcoDI	GTCTC	4 cut(s)	67, 251, 806, 1079
BcuI	ACTAGT	1 cut(s)	242
BfaI	CTAG	5 cut(s)	243, 405, 554, 999, 1022
BisI	GCNGC	2 cut(s)	273, 1019
BlsI	GCNGC	2 cut(s)	274, 1020
Bme1390I	CCNGG	2 cut(s)	531, 636
BmeT110I	CYCGRG	2 cut(s)	66, 883
BmrFI	CCNGG	2 cut(s)	531, 636
BmsI	GCATC	5 cut(s)	208, 337, 550, 689, 1021
BpmI	CTGGAG	1 cut(s)	510
BpuMI	CCSGG	1 cut(s)	636
Bsa29I	ATCGAT	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	821
BsaJI	CCNNGG	2 cut(s)	178, 634
Bsc4I	CCNNNNNNNGG	1 cut(s)	808
Bse118I	RCCGGY	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	998
BseBI	CCWGG	1 cut(s)	531
BseCI	ATCGAT	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	178, 634
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	1 cut(s)	808
BseMII	CTCAG	3 cut(s)	267, 318, 807
BseNI	ACTGG	1 cut(s)	998
BseXI	GCAGC	2 cut(s)	284, 1030
Bsh1236I	CGCG	1 cut(s)	575
BshFI	GGCC	2 cut(s)	5, 997
BshVI	ATCGAT	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	839
BsiHKCI	CYCGRG	2 cut(s)	66, 883
BsiSI	CCGG	3 cut(s)	102, 115, 636
BslFI	GGGAC	1 cut(s)	864
BslI	CCNNNNNNNGG	1 cut(s)	808
BsmAI	GTCTC	4 cut(s)	67, 251, 806, 1079
BsmFI	GGGAC	1 cut(s)	864
BsnI	GGCC	2 cut(s)	5, 997
BsoBI	CYCGRG	2 cut(s)	66, 883
Bsp1286I	GDGCHC	1 cut(s)	839
Bsp1407I	TGTACA	2 cut(s)	466, 784
Bsp143I	GATC	3 cut(s)	205, 213, 576
BspACI	CCGC	2 cut(s)	147, 563
BspANI	GGCC	2 cut(s)	5, 997
BspCNI	CTCAG	3 cut(s)	268, 319, 808
BspDI	ATCGAT	1 cut(s)	216
BspFNI	CGCG	1 cut(s)	575
BspPI	GGATC	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	114
BsrGI	TGTACA	2 cut(s)	466, 784
BsrI	ACTGG	1 cut(s)	998
BssAI	RCCGGY	1 cut(s)	114
BssECI	CCNNGG	2 cut(s)	178, 634
BssMI	GATC	3 cut(s)	205, 213, 576
BssNI	GRCGYC	1 cut(s)	821
BssSI	CACGAG	1 cut(s)	832
Bst2BI	CACGAG	1 cut(s)	832
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	3 cut(s)	466, 622, 898
Bst6I	CTCTTC	1 cut(s)	201
BstACI	GRCGYC	1 cut(s)	821
BstAUI	TGTACA	2 cut(s)	466, 784
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	3 cut(s)	276, 327, 816
BstDSI	CCRYGG	1 cut(s)	178
BstF5I	GGATG	1 cut(s)	385
BstFNI	CGCG	1 cut(s)	575
BstHHI	GCGC	3 cut(s)	44, 223, 553
BstKTI	GATC	3 cut(s)	208, 216, 579
BstMAI	GTCTC	4 cut(s)	67, 251, 806, 1079
BstMBI	GATC	3 cut(s)	205, 213, 576
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 89, 111, 269, 356, 550, 581
BstNI	CCWGG	1 cut(s)	531
BstNSI	RCATGY	1 cut(s)	927
BstSCI	CCNGG	2 cut(s)	529, 634
BstUI	CGCG	1 cut(s)	575
BstV1I	GCAGC	2 cut(s)	284, 1030
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
Bsu15I	ATCGAT	1 cut(s)	216
BsuRI	GGCC	2 cut(s)	5, 997
BsuTUI	ATCGAT	1 cut(s)	216
BtgI	CCRYGG	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	385
Cac8I	GCNNGC	1 cut(s)	112
CfoI	GCGC	3 cut(s)	44, 223, 553
Cfr10I	RCCGGY	1 cut(s)	114
ClaI	ATCGAT	1 cut(s)	216
CseI	GACGC	2 cut(s)	810, 1024
CsiI	ACCWGGT	1 cut(s)	529
Csp6I	GTAC	5 cut(s)	384, 467, 571, 785, 991
CviAII	CATG	1 cut(s)	924
CviQI	GTAC	5 cut(s)	384, 467, 571, 785, 991
DdeI	CTNAG	3 cut(s)	276, 327, 816
DpnI	GATC	3 cut(s)	207, 215, 578
DpnII	GATC	3 cut(s)	205, 213, 576
DraIII	CACNNNGTG	1 cut(s)	782
DrdI	GACNNNNNNGTC	1 cut(s)	820
DseDI	GACNNNNNNGTC	1 cut(s)	820
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco32I	GATATC	2 cut(s)	49, 517
Eco88I	CYCGRG	2 cut(s)	66, 883
EcoRII	CCWGG	1 cut(s)	529
EcoRV	GATATC	2 cut(s)	49, 517
FaeI	CATG	1 cut(s)	927
FalI	AAGNNNNNCTT	6 cut(s)	103, 135, 414, 446, 489, 521
FaqI	GGGAC	1 cut(s)	864
FatI	CATG	1 cut(s)	923
FauI	CCCGC	1 cut(s)	556
Fnu4HI	GCNGC	2 cut(s)	273, 1019
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	2 cut(s)	273, 1019
FspBI	CTAG	5 cut(s)	243, 405, 554, 999, 1022
GlaI	GCGC	3 cut(s)	43, 222, 552
GluI	GCNGC	2 cut(s)	273, 1019
GsuI	CTGGAG	1 cut(s)	510
HaeIII	GGCC	2 cut(s)	5, 997
HapII	CCGG	3 cut(s)	102, 115, 636
HgaI	GACGC	2 cut(s)	810, 1024
HhaI	GCGC	3 cut(s)	44, 223, 553
Hin1I	GRCGYC	1 cut(s)	821
Hin1II	CATG	1 cut(s)	927
Hin6I	GCGC	3 cut(s)	42, 221, 551
HinP1I	GCGC	3 cut(s)	42, 221, 551
HindIII	AAGCTT	1 cut(s)	843
HinfI	GANTC	5 cut(s)	24, 164, 191, 437, 1043
HpaII	CCGG	3 cut(s)	102, 115, 636
HphI	GGTGA	1 cut(s)	943
Hpy166II	GTNNAC	3 cut(s)	785, 787, 828
Hpy188I	TCNGA	7 cut(s)	23, 29, 372, 436, 442, 581, 615
Hpy188III	TCNNGA	5 cut(s)	66, 200, 209, 536, 964
Hpy8I	GTNNAC	3 cut(s)	785, 787, 828
Hpy99I	CGWCG	1 cut(s)	826
HpyCH4III	ACNGT	3 cut(s)	466, 622, 898
HpyCH4IV	ACGT	3 cut(s)	252, 321, 445
HpyCH4V	TGCA	2 cut(s)	710, 977
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 89, 111, 269, 356, 550, 581
HpyF3I	CTNAG	3 cut(s)	276, 327, 816
HpySE526I	ACGT	3 cut(s)	252, 321, 445
Hsp92I	GRCGYC	1 cut(s)	821
Hsp92II	CATG	1 cut(s)	927
HspAI	GCGC	3 cut(s)	42, 221, 551
Kzo9I	GATC	3 cut(s)	205, 213, 576
LmnI	GCTCC	2 cut(s)	88, 677
Lsp1109I	GCAGC	2 cut(s)	284, 1030
LweI	GCATC	5 cut(s)	208, 337, 550, 689, 1021
MabI	ACCWGGT	1 cut(s)	529
MaeI	CTAG	5 cut(s)	243, 405, 554, 999, 1022
MaeII	ACGT	3 cut(s)	252, 321, 445
MaeIII	GTNAC	3 cut(s)	322, 622, 862
MalI	GATC	3 cut(s)	207, 215, 578
MboI	GATC	3 cut(s)	205, 213, 576
MboII	GAAGA	4 cut(s)	188, 215, 509, 707
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	839
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	1052
MmeI	TCCRAC	1 cut(s)	934
MnlI	CCTC	4 cut(s)	89, 243, 811, 913
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	2 cut(s)	195, 501
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	7 cut(s)	267, 420, 459, 507, 740, 900, 1038
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	3 cut(s)	102, 115, 636
MspR9I	CCNGG	2 cut(s)	531, 636
MvaI	CCWGG	1 cut(s)	531
MvnI	CGCG	1 cut(s)	575
MwoI	GCNNNNNNNGC	7 cut(s)	50, 89, 111, 269, 356, 550, 581
NciI	CCSGG	1 cut(s)	636
NdeII	GATC	3 cut(s)	205, 213, 576
NlaIII	CATG	1 cut(s)	927
NmuCI	GTSAC	2 cut(s)	622, 862
NspI	RCATGY	1 cut(s)	927
PaeR7I	CTCGAG	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	2 cut(s)	186, 830
PdmI	GAANNNNTTC	2 cut(s)	195, 501
PfeI	GAWTC	4 cut(s)	24, 164, 191, 437
PkrI	GCNGC	2 cut(s)	274, 1020
PleI	GAGTC	1 cut(s)	1051
PpsI	GAGTC	1 cut(s)	1051
Psp1406I	AACGTT	1 cut(s)	445
Psp6I	CCWGG	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	529
PsuI	RGATCY	1 cut(s)	205
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	5 cut(s)	385, 468, 572, 786, 992
RsaNI	GTAC	5 cut(s)	384, 467, 571, 785, 991
SaqAI	TTAA	7 cut(s)	267, 420, 459, 507, 740, 900, 1038
SatI	GCNGC	2 cut(s)	273, 1019
Sau3AI	GATC	3 cut(s)	205, 213, 576
SchI	GAGTC	1 cut(s)	1052
ScrFI	CCNGG	2 cut(s)	531, 636
SduI	GDGCHC	1 cut(s)	839
SexAI	ACCWGGT	1 cut(s)	529
SfaNI	GCATC	5 cut(s)	208, 337, 550, 689, 1021
Sfr274I	CTCGAG	1 cut(s)	66
SlaI	CTCGAG	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	66
SmoI	CTYRAG	1 cut(s)	66
SpeI	ACTAGT	1 cut(s)	242
SsiI	CCGC	2 cut(s)	147, 563
SspMI	CTAG	5 cut(s)	243, 405, 554, 999, 1022
StyD4I	CCNGG	2 cut(s)	529, 634
TaaI	ACNGT	3 cut(s)	466, 622, 898
TaiI	ACGT	3 cut(s)	255, 324, 448
TaqI	TCGA	5 cut(s)	55, 67, 201, 216, 946
TatI	WGTACW	2 cut(s)	466, 784
TfiI	GAWTC	4 cut(s)	24, 164, 191, 437
Tru1I	TTAA	7 cut(s)	267, 420, 459, 507, 740, 900, 1038
Tru9I	TTAA	7 cut(s)	267, 420, 459, 507, 740, 900, 1038
TseFI	GTSAC	2 cut(s)	622, 862
TseI	GCWGC	2 cut(s)	272, 1018
Tsp45I	GTSAC	2 cut(s)	622, 862
TspDTI	ATGAA	6 cut(s)	332, 386, 510, 666, 714, 784
TspGWI	ACGGA	2 cut(s)	509, 770
XceI	RCATGY	1 cut(s)	927
XhoI	CTCGAG	1 cut(s)	66
XmnI	GAANNNNTTC	2 cut(s)	195, 501
XspI	CTAG	5 cut(s)	243, 405, 554, 999, 1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.