Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000971.1

Orthogroup ID

OG0003907

Physical Location & Seq

Genomic Coordinates Reverse (-)

34273 .. 36190

Gene Structure 1918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000971.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

atgatgaggcccaaagacccaccaaatcacttcaccatctcaacatatgaagagcaagtagataagacgatcctttcactcagtgcaccacacaaaggccaagaagcagaagcagaagcagaagcagaagcagaagcaatgtctgaaaacccaaaaatacgtttcggcatattaggatgtgcggacatagctagaaaggtagctcgcgccataaacctggcacccaattcgaccctgtacgccattgcgagccgctccatcgagaaagcccacaaattcgcagccgacaatggactgtccactcagaccctcaacatctacggcagctatgatcagctgctcgatgacccatgtgttgatgctgtgtacatgcctctgcccactagtcttcaccttcactgggctgtcttggctgcccgcaagaagaagcacttgctcttggaaaaaccagcggctcttgatgtgggtgagcttgatcagatactccaagcttgccaatccaacggtgtacagttcatgagtgggagtatgtggctgcatcaccctaggactgccaaattgaaggacttgatctctgattccaagctctttggtcaaatcaactacattcatagctcatcaacacttccaggaaccaaggaatttttggagaacaacataagagtgaaaccagatttagaacctctcggtgcgcttgggagcctaggctggtactgcattgaagccattttgtgggctaaggactaccaactaccaactatagtcactgctctaccagatgtcacaaaaaactctgcaggggtcatcttgtctttcactgcatcaattcaatgggaaccactggacccaactgttgcaacaattcactgttctttcctctcccacacatccatggacttggctatatctgcttctaatggtacagtgcgttgcaatgactacatcattccatatgctgagaactattcttcatttgaattcacaaccggtgcaaagtttgcagaactccacattgggtggagtgtagtacctgaagaagttagagtggtttctcagctgcctcaagaggcgttgatggttcaagagctctcaaggcttgccaagggcatcagggaatttgggtgtaatccggaccaaaaatggccacaaatcagcagaaatacacaattagtattggatgcagtgaagaaatccattgatcttggttttgaacctgttagggtgttattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GFO_IDH_MocA

Protein Analysis

410

Amino Acids

45.33

Weight (kDa)

5.67

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09670
fragaria_vesca	FvH4_1g28600 FvH4_2g12650
malus_domestica	MD09G1265700.v1.1 MD09G1265900.v1.1 MD10G1042200.v1.1 MD17G1262300.v1.1
prunus_persica	Prupe.3G163700_v2.0.a1 Prupe.8G046300_v2.0.a1
pyrus_communis	pycom09g17920 pycom17g26220
rosa_chinensis	RchiOBHm_Chr3g0492491 RchiOBHm_Chr6g0273321
rosa_laevigata	RLG00000013623 RLG00000022763
rosa_multiflora	Rmu_sc0000239.1_g000005 Rmu_sc0000971.1_g000009 Rmu_sc0010088.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392240 Rroxscaffold_7G00195440
rosa_rugosa	Rorug03G0254000 Rorug03G0254200 Rorug03G0254300 Rorug06G0074100
rosa_samantha	Rh3AG304600 Rh3BG340500 Rh3CG337900 Rh3DG339700 Rh6AG189400 Rh6BG192600 Rh6CG192600 Rh6DG184100
rosa_wichuraiana	Rw3G026830 Rw6G016480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	220
AccB7I	CCANNNNNTGG	1 cut(s)	732
AccBSI	CCGCTC	1 cut(s)	255
AccII	CGCG	1 cut(s)	207
AccIII	TCCGGA	1 cut(s)	1129
AciI	CCGC	4 cut(s)	182, 253, 418, 452
AclWI	GGATC	1 cut(s)	64
AcoI	YGGCCR	1 cut(s)	1142
AcsI	RAATTY	4 cut(s)	275, 641, 977, 1115
AcuI	CTGAAG	1 cut(s)	1053
AdeI	CACNNNGTG	1 cut(s)	83
AfaI	GTAC	6 cut(s)	239, 368, 510, 713, 922, 1029
AfiI	CCNNNNNNNGG	3 cut(s)	95, 400, 732
AgeI	ACCGGT	1 cut(s)	986
AgsI	TTSAA	6 cut(s)	562, 722, 830, 977, 1082, 1211
AhlI	ACTAGT	1 cut(s)	383
AjnI	CCWGG	2 cut(s)	216, 628
AjuI	GAANNNNNNNTTGG	2 cut(s)	996, 1028
Alw21I	GWGCWC	2 cut(s)	88, 1089
Alw44I	GTGCAC	1 cut(s)	84
AlwI	GGATC	1 cut(s)	64
Aor13HI	TCCGGA	1 cut(s)	1129
AoxI	GGCC	3 cut(s)	8, 97, 1142
ApaLI	GTGCAC	1 cut(s)	84
ApeKI	GCWGC	6 cut(s)	281, 324, 337, 413, 535, 1057
ApoI	RAATTY	4 cut(s)	275, 641, 977, 1115
AsiGI	ACCGGT	1 cut(s)	986
AspA2I	CCTAGG	2 cut(s)	545, 703
AspLEI	GCGC	2 cut(s)	209, 694
AspS9I	GGNCC	3 cut(s)	9, 844, 1132
AsuHPI	GGTGA	4 cut(s)	25, 383, 479, 533
AvaII	GGWCC	2 cut(s)	844, 1132
AvrII	CCTAGG	2 cut(s)	545, 703
BaeGI	GKGCMC	1 cut(s)	88
BalI	TGGCCA	1 cut(s)	1144
BanI	GGYRCC	1 cut(s)	220
BanII	GRGCYC	1 cut(s)	1089
BbsI	GAAGAC	1 cut(s)	380
Bbv12I	GWGCWC	2 cut(s)	88, 1089
BbvI	GCAGC	6 cut(s)	293, 324, 336, 400, 522, 1044
BccI	CCATC	3 cut(s)	44, 266, 1069
BceAI	ACGGC	1 cut(s)	337
BcgI	CGANNNNNNTGC	2 cut(s)	210, 244
BciT130I	CCWGG	2 cut(s)	218, 630
BclI	TGATCA	2 cut(s)	331, 475
BcuI	ACTAGT	1 cut(s)	383
BfaI	CTAG	4 cut(s)	192, 384, 546, 704
BfmI	CTRYAG	2 cut(s)	759, 795
BisI	GCNGC	8 cut(s)	253, 282, 325, 338, 414, 453, 536, 1058
BlnI	CCTAGG	2 cut(s)	545, 703
BlsI	GCNGC	8 cut(s)	254, 283, 326, 339, 415, 454, 537, 1059
Bme1390I	CCNGG	2 cut(s)	218, 630
Bme18I	GGWCC	2 cut(s)	844, 1132
BmgT120I	GGNCC	3 cut(s)	9, 844, 1132
BmiI	GGNNCC	5 cut(s)	222, 634, 701, 837, 846
BmrFI	CCNGG	2 cut(s)	218, 630
BmrI	ACTGGG	1 cut(s)	409
BmsI	GCATC	5 cut(s)	349, 547, 830, 1116, 1168
BmuI	ACTGGG	1 cut(s)	409
BpiI	GAAGAC	1 cut(s)	380
Bpu10I	CCTNAGC	1 cut(s)	738
BpuEI	CTTGAG	2 cut(s)	1047, 1075
BsaJI	CCNNGG	5 cut(s)	545, 636, 703, 891, 1101
BsaWI	WCCGGW	2 cut(s)	986, 1129
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 400, 732
Bse118I	RCCGGY	1 cut(s)	986
Bse1I	ACTGG	2 cut(s)	404, 846
Bse3DI	GCAATG	3 cut(s)	144, 243, 940
BseAI	TCCGGA	1 cut(s)	1129
BseBI	CCWGG	2 cut(s)	218, 630
BseDI	CCNNGG	5 cut(s)	545, 636, 703, 891, 1101
BseGI	GGATG	3 cut(s)	182, 887, 1183
BseLI	CCNNNNNNNGG	3 cut(s)	95, 400, 732
BseMI	GCAATG	3 cut(s)	144, 243, 940
BseMII	CTCAG	4 cut(s)	94, 317, 948, 1067
BseNI	ACTGG	2 cut(s)	404, 846
BseSI	GKGCMC	1 cut(s)	88
BseXI	GCAGC	6 cut(s)	293, 324, 336, 400, 522, 1044
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	3 cut(s)	10, 99, 1144
BshNI	GGYRCC	1 cut(s)	220
BshTI	ACCGGT	1 cut(s)	986
BsiHKAI	GWGCWC	2 cut(s)	88, 1089
BsiSI	CCGG	2 cut(s)	987, 1130
BslI	CCNNNNNNNGG	3 cut(s)	95, 400, 732
BsnI	GGCC	3 cut(s)	10, 99, 1144
Bsp1286I	GDGCHC	2 cut(s)	88, 1089
Bsp13I	TCCGGA	1 cut(s)	1129
Bsp1407I	TGTACA	2 cut(s)	366, 508
Bsp143I	GATC	5 cut(s)	69, 331, 475, 570, 1198
Bsp19I	CCATGG	1 cut(s)	891
BspACI	CCGC	4 cut(s)	182, 253, 418, 452
BspANI	GGCC	3 cut(s)	10, 99, 1144
BspCNI	CTCAG	4 cut(s)	93, 316, 949, 1066
BspEI	TCCGGA	1 cut(s)	1129
BspFNI	CGCG	1 cut(s)	207
BspHI	TCATGA	1 cut(s)	516
BspLI	GGNNCC	5 cut(s)	222, 634, 701, 837, 846
BspMAI	CTGCAG	1 cut(s)	799
BspPI	GGATC	1 cut(s)	64
BspQI	GCTCTTC	1 cut(s)	45
BspT107I	GGYRCC	1 cut(s)	220
BsrBI	CCGCTC	1 cut(s)	255
BsrDI	GCAATG	3 cut(s)	144, 243, 940
BsrFI	RCCGGY	1 cut(s)	986
BsrGI	TGTACA	2 cut(s)	366, 508
BsrI	ACTGG	2 cut(s)	404, 846
BssAI	RCCGGY	1 cut(s)	986
BssECI	CCNNGG	5 cut(s)	545, 636, 703, 891, 1101
BssMI	GATC	5 cut(s)	69, 331, 475, 570, 1198
BssT1I	CCWWGG	5 cut(s)	545, 636, 703, 891, 1101
Bst2UI	CCWGG	2 cut(s)	218, 630
Bst4CI	ACNGT	6 cut(s)	297, 506, 513, 853, 869, 925
Bst6I	CTCTTC	1 cut(s)	45
BstAPI	GCANNNNNTGC	1 cut(s)	998
BstAUI	TGTACA	2 cut(s)	366, 508
BstC8I	GCNNGC	5 cut(s)	205, 250, 418, 493, 1098
BstDEI	CTNAG	5 cut(s)	80, 303, 738, 957, 1053
BstDSI	CCRYGG	1 cut(s)	891
BstF5I	GGATG	3 cut(s)	182, 887, 1183
BstFNI	CGCG	1 cut(s)	207
BstHHI	GCGC	2 cut(s)	209, 694
BstKTI	GATC	5 cut(s)	72, 334, 478, 573, 1201
BstMBI	GATC	5 cut(s)	69, 331, 475, 570, 1198
BstMWI	GCNNNNNNNGC	6 cut(s)	188, 410, 714, 908, 998, 1093
BstNI	CCWGG	2 cut(s)	218, 630
BstNSI	RCATGY	1 cut(s)	373
BstSCI	CCNGG	2 cut(s)	216, 628
BstSFI	CTRYAG	2 cut(s)	759, 795
BstSLI	GKGCMC	1 cut(s)	88
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	6 cut(s)	293, 324, 336, 400, 522, 1044
BstV2I	GAAGAC	1 cut(s)	380
BstXI	CCANNNNNNTGG	2 cut(s)	217, 898
BsuRI	GGCC	3 cut(s)	10, 99, 1144
BtgI	CCRYGG	1 cut(s)	891
BtsCI	GGATG	3 cut(s)	182, 887, 1183
BtsI	GCAGTG	3 cut(s)	765, 816, 1188
BtsIMutI	CAGTG	8 cut(s)	88, 397, 765, 816, 839, 865, 930, 1188
Cac8I	GCNNGC	5 cut(s)	205, 250, 418, 493, 1098
CciI	TCATGA	1 cut(s)	516
CfoI	GCGC	2 cut(s)	209, 694
Cfr10I	RCCGGY	1 cut(s)	986
Cfr13I	GGNCC	3 cut(s)	9, 844, 1132
Csp6I	GTAC	6 cut(s)	238, 367, 509, 712, 921, 1028
CspAI	ACCGGT	1 cut(s)	986
CviAII	CATG	4 cut(s)	351, 370, 517, 892
CviQI	GTAC	6 cut(s)	238, 367, 509, 712, 921, 1028
DdeI	CTNAG	5 cut(s)	80, 303, 738, 957, 1053
DpnI	GATC	5 cut(s)	71, 333, 477, 572, 1200
DpnII	GATC	5 cut(s)	69, 331, 475, 570, 1198
DraIII	CACNNNGTG	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	1142
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Ecl136II	GAGCTC	1 cut(s)	1087
Eco130I	CCWWGG	5 cut(s)	545, 636, 703, 891, 1101
Eco24I	GRGCYC	1 cut(s)	1089
Eco47I	GGWCC	2 cut(s)	844, 1132
Eco53kI	GAGCTC	1 cut(s)	1087
Eco57I	CTGAAG	1 cut(s)	1053
EcoICRI	GAGCTC	1 cut(s)	1087
EcoRI	GAATTC	1 cut(s)	977
EcoRII	CCWGG	2 cut(s)	216, 628
EcoT14I	CCWWGG	5 cut(s)	545, 636, 703, 891, 1101
EcoT38I	GRGCYC	1 cut(s)	1089
ErhI	CCWWGG	5 cut(s)	545, 636, 703, 891, 1101
FaeI	CATG	4 cut(s)	354, 373, 520, 895
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FatI	CATG	4 cut(s)	350, 369, 516, 891
FauI	CCCGC	1 cut(s)	425
FauNDI	CATATG	2 cut(s)	46, 952
FbaI	TGATCA	2 cut(s)	331, 475
Fnu4HI	GCNGC	8 cut(s)	253, 282, 325, 338, 414, 453, 536, 1058
FokI	GGATG	3 cut(s)	189, 874, 1190
FriOI	GRGCYC	1 cut(s)	1089
Fsp4HI	GCNGC	8 cut(s)	253, 282, 325, 338, 414, 453, 536, 1058
FspBI	CTAG	4 cut(s)	192, 384, 546, 704
GlaI	GCGC	2 cut(s)	208, 693
GluI	GCNGC	8 cut(s)	253, 282, 325, 338, 414, 453, 536, 1058
HaeIII	GGCC	3 cut(s)	10, 99, 1144
HapII	CCGG	2 cut(s)	987, 1130
HhaI	GCGC	2 cut(s)	209, 694
Hin1II	CATG	4 cut(s)	354, 373, 520, 895
Hin6I	GCGC	2 cut(s)	207, 692
HinP1I	GCGC	2 cut(s)	207, 692
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	1 cut(s)	578
HpaII	CCGG	2 cut(s)	987, 1130
HphI	GGTGA	4 cut(s)	25, 383, 479, 533
Hpy166II	GTNNAC	4 cut(s)	86, 300, 367, 509
Hpy188I	TCNGA	4 cut(s)	145, 306, 480, 577
Hpy188III	TCNNGA	6 cut(s)	262, 458, 517, 1064, 1082, 1130
Hpy8I	GTNNAC	4 cut(s)	86, 300, 367, 509
HpyAV	CCTTC	2 cut(s)	404, 556
HpyCH4III	ACNGT	6 cut(s)	297, 506, 513, 853, 869, 925
HpyCH4IV	ACGT	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	6 cut(s)	188, 410, 714, 908, 998, 1093
HpyF3I	CTNAG	5 cut(s)	80, 303, 738, 957, 1053
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	4 cut(s)	354, 373, 520, 895
HspAI	GCGC	2 cut(s)	207, 692
Kpn2I	TCCGGA	1 cut(s)	1129
Ksp22I	TGATCA	2 cut(s)	331, 475
Kzo9I	GATC	5 cut(s)	69, 331, 475, 570, 1198
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	2 cut(s)	260, 699
Lsp1109I	GCAGC	6 cut(s)	293, 324, 336, 400, 522, 1044
LweI	GCATC	5 cut(s)	349, 547, 830, 1116, 1168
MaeI	CTAG	4 cut(s)	192, 384, 546, 704
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	2 cut(s)	763, 781
MalI	GATC	5 cut(s)	71, 333, 477, 572, 1200
MbiI	CCGCTC	1 cut(s)	255
MboI	GATC	5 cut(s)	69, 331, 475, 570, 1198
MboII	GAAGA	6 cut(s)	62, 380, 436, 960, 1046, 1198
MhlI	GDGCHC	2 cut(s)	88, 1089
MlsI	TGGCCA	1 cut(s)	1144
MluCI	AATT	9 cut(s)	226, 275, 557, 641, 825, 861, 977, 1115, 1166
MluNI	TGGCCA	1 cut(s)	1144
MmeI	TCCRAC	1 cut(s)	525
MnlI	CCTC	6 cut(s)	320, 384, 693, 887, 1060, 1071
Mox20I	TGGCCA	1 cut(s)	1144
MroI	TCCGGA	1 cut(s)	1129
MscI	TGGCCA	1 cut(s)	1144
MslI	CAYNNNNRTG	2 cut(s)	662, 890
Msp20I	TGGCCA	1 cut(s)	1144
MspA1I	CMGCKG	3 cut(s)	337, 452, 1057
MspI	CCGG	2 cut(s)	987, 1130
MspR9I	CCNGG	2 cut(s)	218, 630
MvaI	CCWGG	2 cut(s)	218, 630
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	6 cut(s)	188, 410, 714, 908, 998, 1093
NcoI	CCATGG	1 cut(s)	891
NdeI	CATATG	2 cut(s)	46, 952
NdeII	GATC	5 cut(s)	69, 331, 475, 570, 1198
NlaIII	CATG	4 cut(s)	354, 373, 520, 895
NlaIV	GGNNCC	5 cut(s)	222, 634, 701, 837, 846
NmuCI	GTSAC	2 cut(s)	763, 781
NspI	RCATGY	1 cut(s)	373
PagI	TCATGA	1 cut(s)	516
PciSI	GCTCTTC	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	578
PflMI	CCANNNNNTGG	1 cut(s)	732
PfoI	TCCNGGA	1 cut(s)	628
PinAI	ACCGGT	1 cut(s)	986
PkrI	GCNGC	8 cut(s)	254, 283, 326, 339, 415, 454, 537, 1059
Psp124BI	GAGCTC	1 cut(s)	1089
Psp6I	CCWGG	2 cut(s)	216, 628
PspGI	CCWGG	2 cut(s)	216, 628
PspN4I	GGNNCC	5 cut(s)	222, 634, 701, 837, 846
PspPI	GGNCC	3 cut(s)	9, 844, 1132
PstI	CTGCAG	1 cut(s)	799
PvuII	CAGCTG	2 cut(s)	337, 1057
RsaI	GTAC	6 cut(s)	239, 368, 510, 713, 922, 1029
RsaNI	GTAC	6 cut(s)	238, 367, 509, 712, 921, 1028
RseI	CAYNNNNRTG	2 cut(s)	662, 890
SacI	GAGCTC	1 cut(s)	1089
SapI	GCTCTTC	1 cut(s)	45
SatI	GCNGC	8 cut(s)	253, 282, 325, 338, 414, 453, 536, 1058
Sau3AI	GATC	5 cut(s)	69, 331, 475, 570, 1198
Sau96I	GGNCC	3 cut(s)	9, 844, 1132
ScrFI	CCNGG	2 cut(s)	218, 630
SduI	GDGCHC	2 cut(s)	88, 1089
SfaNI	GCATC	5 cut(s)	349, 547, 830, 1116, 1168
SfcI	CTRYAG	2 cut(s)	759, 795
SinI	GGWCC	2 cut(s)	844, 1132
SmiMI	CAYNNNNRTG	2 cut(s)	662, 890
SmlI	CTYRAG	2 cut(s)	1062, 1090
SmoI	CTYRAG	2 cut(s)	1062, 1090
SpeI	ACTAGT	1 cut(s)	383
Sse9I	AATT	9 cut(s)	226, 275, 557, 641, 825, 861, 977, 1115, 1166
SsiI	CCGC	4 cut(s)	182, 253, 418, 452
SspMI	CTAG	4 cut(s)	192, 384, 546, 704
SstI	GAGCTC	1 cut(s)	1089
StyD4I	CCNGG	2 cut(s)	216, 628
StyI	CCWWGG	5 cut(s)	545, 636, 703, 891, 1101
TaaI	ACNGT	6 cut(s)	297, 506, 513, 853, 869, 925
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	3 cut(s)	230, 261, 342
TasI	AATT	9 cut(s)	226, 275, 557, 641, 825, 861, 977, 1115, 1166
TatI	WGTACW	2 cut(s)	366, 508
TauI	GCSGC	2 cut(s)	255, 455
TfiI	GAWTC	1 cut(s)	578
TscAI	CASTG	8 cut(s)	88, 404, 772, 823, 846, 872, 930, 1188
TseFI	GTSAC	2 cut(s)	763, 781
TseI	GCWGC	6 cut(s)	281, 324, 337, 413, 535, 1057
Tsp45I	GTSAC	2 cut(s)	763, 781
TspDTI	ATGAA	4 cut(s)	63, 505, 599, 960
TspRI	CASTG	8 cut(s)	88, 404, 772, 823, 846, 872, 930, 1188
Van91I	CCANNNNNTGG	1 cut(s)	732
VneI	GTGCAC	1 cut(s)	84
VpaK11BI	GGWCC	2 cut(s)	844, 1132
XapI	RAATTY	4 cut(s)	275, 641, 977, 1115
XceI	RCATGY	1 cut(s)	373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	643
XmaJI	CCTAGG	2 cut(s)	545, 703
XspI	CTAG	4 cut(s)	192, 384, 546, 704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.