FvH4_2g12650

Oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003907
Physical Location & Seq
Forward (+)
11113273 .. 11116038
2766 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12650.t1

Sequence Viewer

Length: 1083 bp
ATGTCAGCGGAGACCCCAATCCGGTTCGGAATCCTAGGCTGCGCCGACATAGCCCGAAAGGTCTCACGCGCCATCACTCTCGCCCCAAACGCCACTCTTTTCGCCGTCGCAAGTCGTTCCGTCGACAAGGCCACTCGATTCGCCAAGGCCAACAACTTCCCTCCGAACGCCAGAATCTACGGCTCCTACGACGCCGTTTTGGACGACCCTGACGTCGACGCCGTCTACCTCCCCCTCCCTACCAGCCTACACATCCAGTGGGCCGTCCTCGCCGCCCAGAAGAAGAAGCACATCTTGCTCGAGAAGCCCGTCGCGCTCAACGTGGCCGAGTTTGACAAGATTGTTGCGGCATGTGAATCCAGTGGGGTGCAGCTCATGGATGGTACCATGTGGATGCATCATCCCAGGACTGCCAAGATGTGGGAGTTTCTCTCTGATGCGAACCGGTTTGGTCAGCTCACCTCGATAAACACCTGCTTTACATTTGCTGCTGATGCTGATTTCCTGAAGAATGATATTCGTGTTAAACCAGACCTTGATGCTCATGGTGCTCTTGGGGATGCAGGGTGGTACTGCATCAGGGCAATCCTTTGGGCTAATAACTATGAACTGCCAAAGACAGTTGTCGCCTTGCGCGGCCCTATACTTAATGAAGCTGGGGTGATTTTATCTTGTGGAGCTTCTCTACACTGGGAAGATGGGAAAGTGGGAACCTTCCACTGCTCTTTCTTGTCAAGTTTGACAATGGATATAGCTGCTATCGGTACAAAGGGAACGTTACATGTCAGTGGTTTTGTTATCCCTCATCAAGAGAAAGAGGCTTCTTTCTCTGTAGCTTCAGAAACTGGATTTGATGATCTTGTGACCAGTTGGGTACCACCCCCAAGTGATCATATAGTTACCACAGATCTTCCACAGGAGGCTCTTATGGTAACAGAGTTTTCTCGCTTGGTAGGGACTGTTAAAAATGGATCTGCACCTGAGAAGAAATGGCCGATCCTTAGCCGGAAGACACAGCTAGTAATCGATGCTGTCAAGGCATCAATTGAAAAGGGGTTTGAGCCTATTCCTATTGAATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GFO_IDH_MocA

Protein Analysis

361

Amino Acids

39.25

Weight (kDa)

5.94

Isoelectric Point (pI)

32.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GFO_IDH_MocA PF01408 7 - 126 1.2e-20 Oxidoreductase family, NAD-binding Rossmann fold
GFO_IDH_MocA_C3 PF22725 146 - 260 1.3e-11 GFO/IDH/MocA C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 482
AasI GACNNNNNNGTC 1 cut(s) 212
AatII GACGTC 1 cut(s) 216
Acc36I ACCTGC 1 cut(s) 482
Acc65I GGTACC 2 cut(s) 383, 874
AccB1I GGYRCC 2 cut(s) 383, 874
AccB7I CCANNNNNTGG 1 cut(s) 420
AccI GTMKAC 3 cut(s) 123, 216, 225
AccII CGCG 3 cut(s) 69, 314, 636
AciI CCGC 4 cut(s) 8, 273, 347, 636
AclI AACGTT 1 cut(s) 776
AclWI GGATC 2 cut(s) 979, 991
AcoI YGGCCR 2 cut(s) 324, 992
AcuI CTGAAG 2 cut(s) 527, 822
AcyI GRCGYC 3 cut(s) 192, 213, 219
AfaI GTAC 4 cut(s) 385, 572, 766, 876
AfiI CCNNNNNNNGG 2 cut(s) 21, 420
AflIII ACRYGT 1 cut(s) 781
AgeI ACCGGT 1 cut(s) 444
AgsI TTSAA 2 cut(s) 1049, 1076
AjnI CCWGG 1 cut(s) 404
AluBI AGCT 7 cut(s) 373, 457, 656, 680, 755, 836, 1018
AluI AGCT 7 cut(s) 373, 457, 656, 680, 755, 836, 1018
Alw21I GWGCWC 1 cut(s) 553
Alw26I GTCTC 2 cut(s) 5, 67
AlwI GGATC 2 cut(s) 979, 991
AlwNI CAGNNNCTG 1 cut(s) 845
Ama87I CYCGRG 1 cut(s) 299
AoxI GGCC 6 cut(s) 129, 147, 261, 324, 637, 992
ApeKI GCWGC 4 cut(s) 39, 370, 488, 755
AsiGI ACCGGT 1 cut(s) 444
Asp718I GGTACC 2 cut(s) 383, 874
AspA2I CCTAGG 1 cut(s) 34
AspLEI GCGC 4 cut(s) 44, 71, 316, 636
AspS9I GGNCC 2 cut(s) 261, 638
AsuHPI GGTGA 2 cut(s) 451, 673
AvaI CYCGRG 1 cut(s) 299
AvrII CCTAGG 1 cut(s) 34
BanI GGYRCC 2 cut(s) 383, 874
BbsI GAAGAC 1 cut(s) 1016
Bbv12I GWGCWC 1 cut(s) 553
BbvI GCAGC 4 cut(s) 26, 382, 475, 742
BccI CCATC 3 cut(s) 80, 374, 692
BceAI ACGGC 5 cut(s) 89, 179, 196, 206, 248
BciT130I CCWGG 1 cut(s) 406
BclI TGATCA 1 cut(s) 889
BcoDI GTCTC 2 cut(s) 5, 67
BfaI CTAG 2 cut(s) 35, 1019
BfmI CTRYAG 1 cut(s) 831
BfuAI ACCTGC 1 cut(s) 482
BglII AGATCT 1 cut(s) 907
BisI GCNGC 7 cut(s) 40, 273, 348, 371, 489, 637, 756
BlnI CCTAGG 1 cut(s) 34
BlsI GCNGC 7 cut(s) 41, 274, 349, 372, 490, 638, 757
Bme1390I CCNGG 1 cut(s) 406
BmeT110I CYCGRG 1 cut(s) 299
BmgT120I GGNCC 2 cut(s) 261, 638
BmiI GGNNCC 4 cut(s) 184, 385, 712, 876
BmrFI CCNGG 1 cut(s) 406
BmrI ACTGGG 1 cut(s) 700
BmsI GCATC 9 cut(s) 384, 406, 427, 484, 529, 550, 585, 1018, 1049
BmuI ACTGGG 1 cut(s) 700
BoxI GACNNNNGTC 1 cut(s) 623
BpiI GAAGAC 1 cut(s) 1016
BplI GAGNNNNNCTC 2 cut(s) 416, 448
Bpu10I CCTNAGC 1 cut(s) 1001
Bsa29I ATCGAT 1 cut(s) 1026
BsaHI GRCGYC 3 cut(s) 192, 213, 219
BsaI GGTCTC 2 cut(s) 5, 67
BsaJI CCNNGG 3 cut(s) 34, 144, 404
BsaWI WCCGGW 2 cut(s) 21, 444
Bsc4I CCNNNNNNNGG 2 cut(s) 21, 420
Bse118I RCCGGY 1 cut(s) 444
Bse1I ACTGG 5 cut(s) 256, 360, 695, 850, 867
BseBI CCWGG 1 cut(s) 406
BseCI ATCGAT 1 cut(s) 1026
BseDI CCNNGG 3 cut(s) 34, 144, 404
BseGI GGATG 5 cut(s) 252, 385, 399, 400, 565
BseLI CCNNNNNNNGG 2 cut(s) 21, 420
BseMII CTCAG 1 cut(s) 972
BseNI ACTGG 5 cut(s) 256, 360, 695, 850, 867
BseXI GCAGC 4 cut(s) 26, 382, 475, 742
BseYI CCCAGC 1 cut(s) 656
BsgI GTGCAG 2 cut(s) 389, 960
Bsh1236I CGCG 3 cut(s) 69, 314, 636
BshFI GGCC 6 cut(s) 131, 149, 263, 326, 639, 994
BshNI GGYRCC 2 cut(s) 383, 874
BshTI ACCGGT 1 cut(s) 444
BshVI ATCGAT 1 cut(s) 1026
BsiHKAI GWGCWC 1 cut(s) 553
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 3 cut(s) 22, 445, 1006
BslFI GGGAC 1 cut(s) 970
BslI CCNNNNNNNGG 2 cut(s) 21, 420
BsmAI GTCTC 2 cut(s) 5, 67
BsmFI GGGAC 1 cut(s) 970
BsnI GGCC 6 cut(s) 131, 149, 263, 326, 639, 994
Bso31I GGTCTC 2 cut(s) 5, 67
BsoBI CYCGRG 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 553
Bsp143I GATC 5 cut(s) 856, 889, 907, 971, 996
BspACI CCGC 4 cut(s) 8, 273, 347, 636
BspANI GGCC 6 cut(s) 131, 149, 263, 326, 639, 994
BspCNI CTCAG 1 cut(s) 973
BspDI ATCGAT 1 cut(s) 1026
BspFNI CGCG 3 cut(s) 69, 314, 636
BspLI GGNNCC 4 cut(s) 184, 385, 712, 876
BspMI ACCTGC 1 cut(s) 482
BspPI GGATC 2 cut(s) 979, 991
BspT107I GGYRCC 2 cut(s) 383, 874
BspTNI GGTCTC 2 cut(s) 5, 67
BsrFI RCCGGY 1 cut(s) 444
BsrI ACTGG 5 cut(s) 256, 360, 695, 850, 867
BssAI RCCGGY 1 cut(s) 444
BssECI CCNNGG 3 cut(s) 34, 144, 404
BssMI GATC 5 cut(s) 856, 889, 907, 971, 996
BssNI GRCGYC 3 cut(s) 192, 213, 219
BssT1I CCWWGG 2 cut(s) 34, 144
Bst2UI CCWGG 1 cut(s) 406
Bst4CI ACNGT 2 cut(s) 622, 961
BstACI GRCGYC 3 cut(s) 192, 213, 219
BstAPI GCANNNNNTGC 1 cut(s) 295
BstDEI CTNAG 2 cut(s) 981, 1001
BstF5I GGATG 5 cut(s) 252, 385, 399, 400, 565
BstFNI CGCG 3 cut(s) 69, 314, 636
BstHHI GCGC 4 cut(s) 44, 71, 316, 636
BstKTI GATC 5 cut(s) 859, 892, 910, 974, 999
BstMAI GTCTC 2 cut(s) 5, 67
BstMBI GATC 5 cut(s) 856, 889, 907, 971, 996
BstMWI GCNNNNNNNGC 9 cut(s) 50, 89, 269, 295, 304, 313, 494, 548, 1037
BstNI CCWGG 1 cut(s) 406
BstNSI RCATGY 2 cut(s) 354, 785
BstPAI GACNNNNGTC 1 cut(s) 623
BstSCI CCNGG 1 cut(s) 404
BstSFI CTRYAG 1 cut(s) 831
BstUI CGCG 3 cut(s) 69, 314, 636
BstV1I GCAGC 4 cut(s) 26, 382, 475, 742
BstV2I GAAGAC 1 cut(s) 1016
BstX2I RGATCY 2 cut(s) 907, 971
BstYI RGATCY 2 cut(s) 907, 971
Bsu15I ATCGAT 1 cut(s) 1026
BsuRI GGCC 6 cut(s) 131, 149, 263, 326, 639, 994
BsuTUI ATCGAT 1 cut(s) 1026
BtsCI GGATG 5 cut(s) 252, 385, 399, 400, 565
BtsI GCAGTG 1 cut(s) 718
BtsIMutI CAGTG 5 cut(s) 263, 367, 688, 718, 793
BveI ACCTGC 1 cut(s) 482
CaiI CAGNNNCTG 1 cut(s) 845
CfoI GCGC 4 cut(s) 44, 71, 316, 636
Cfr10I RCCGGY 1 cut(s) 444
Cfr13I GGNCC 2 cut(s) 261, 638
ClaI ATCGAT 1 cut(s) 1026
CseI GACGC 2 cut(s) 200, 227
Csp6I GTAC 4 cut(s) 384, 571, 765, 875
CspAI ACCGGT 1 cut(s) 444
CviAII CATG 5 cut(s) 351, 376, 388, 545, 782
CviQI GTAC 4 cut(s) 384, 571, 765, 875
DdeI CTNAG 2 cut(s) 981, 1001
DpnI GATC 5 cut(s) 858, 891, 909, 973, 998
DpnII GATC 5 cut(s) 856, 889, 907, 971, 996
DrdI GACNNNNNNGTC 1 cut(s) 212
DseDI GACNNNNNNGTC 1 cut(s) 212
EaeI YGGCCR 2 cut(s) 324, 992
Eco130I CCWWGG 2 cut(s) 34, 144
Eco31I GGTCTC 2 cut(s) 5, 67
Eco57I CTGAAG 2 cut(s) 527, 822
Eco88I CYCGRG 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 404
EcoT14I CCWWGG 2 cut(s) 34, 144
EcoT22I ATGCAT 1 cut(s) 399
ErhI CCWWGG 2 cut(s) 34, 144
FaeI CATG 5 cut(s) 354, 379, 391, 548, 785
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FaqI GGGAC 1 cut(s) 970
FatI CATG 5 cut(s) 350, 375, 387, 544, 781
FbaI TGATCA 1 cut(s) 889
FblI GTMKAC 3 cut(s) 123, 216, 225
Fnu4HI GCNGC 7 cut(s) 40, 273, 348, 371, 489, 637, 756
FokI GGATG 5 cut(s) 239, 387, 392, 406, 572
Fsp4HI GCNGC 7 cut(s) 40, 273, 348, 371, 489, 637, 756
FspBI CTAG 2 cut(s) 35, 1019
GlaI GCGC 4 cut(s) 43, 70, 315, 635
GluI GCNGC 7 cut(s) 40, 273, 348, 371, 489, 637, 756
GsaI CCCAGC 1 cut(s) 660
HaeIII GGCC 6 cut(s) 131, 149, 263, 326, 639, 994
HapII CCGG 3 cut(s) 22, 445, 1006
HgaI GACGC 2 cut(s) 200, 227
HhaI GCGC 4 cut(s) 44, 71, 316, 636
Hin1I GRCGYC 3 cut(s) 192, 213, 219
Hin1II CATG 5 cut(s) 354, 379, 391, 548, 785
Hin6I GCGC 4 cut(s) 42, 69, 314, 634
HinP1I GCGC 4 cut(s) 42, 69, 314, 634
HincII GTYRAC 2 cut(s) 124, 217
HindII GTYRAC 2 cut(s) 124, 217
HinfI GANTC 4 cut(s) 30, 138, 174, 356
HpaII CCGG 3 cut(s) 22, 445, 1006
HphI GGTGA 2 cut(s) 451, 673
Hpy166II GTNNAC 3 cut(s) 124, 217, 226
Hpy188I TCNGA 4 cut(s) 29, 165, 436, 841
Hpy188III TCNNGA 3 cut(s) 301, 505, 809
Hpy8I GTNNAC 3 cut(s) 124, 217, 226
Hpy99I CGWCG 6 cut(s) 110, 125, 194, 218, 221, 314
HpyAV CCTTC 1 cut(s) 724
HpyCH4III ACNGT 2 cut(s) 622, 961
HpyCH4IV ACGT 3 cut(s) 213, 321, 776
HpyCH4V TGCA 5 cut(s) 370, 397, 563, 576, 977
HpyF10VI GCNNNNNNNGC 9 cut(s) 50, 89, 269, 295, 304, 313, 494, 548, 1037
HpyF3I CTNAG 2 cut(s) 981, 1001
HpySE526I ACGT 3 cut(s) 213, 321, 776
Hsp92I GRCGYC 3 cut(s) 192, 213, 219
Hsp92II CATG 5 cut(s) 354, 379, 391, 548, 785
HspAI GCGC 4 cut(s) 42, 69, 314, 634
KpnI GGTACC 2 cut(s) 387, 878
Ksp22I TGATCA 1 cut(s) 889
Kzo9I GATC 5 cut(s) 856, 889, 907, 971, 996
LmnI GCTCC 2 cut(s) 188, 677
Lsp1109I GCAGC 4 cut(s) 26, 382, 475, 742
LweI GCATC 9 cut(s) 384, 406, 427, 484, 529, 550, 585, 1018, 1049
MaeI CTAG 2 cut(s) 35, 1019
MaeII ACGT 3 cut(s) 213, 321, 776
MaeIII GTNAC 4 cut(s) 777, 862, 898, 931
MalI GATC 5 cut(s) 858, 891, 909, 973, 998
MboI GATC 5 cut(s) 856, 889, 907, 971, 996
MboII GAAGA 7 cut(s) 292, 295, 520, 707, 902, 997, 1021
MfeI CAATTG 1 cut(s) 1044
MflI RGATCY 2 cut(s) 907, 971
MhlI GDGCHC 1 cut(s) 553
MluCI AATT 1 cut(s) 1044
MnlI CCTC 8 cut(s) 171, 239, 245, 278, 472, 811, 813, 913
Mph1103I ATGCAT 1 cut(s) 399
MseI TTAA 4 cut(s) 525, 648, 963, 1081
MslI CAYNNNNRTG 2 cut(s) 392, 786
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 3 cut(s) 22, 445, 1006
MspR9I CCNGG 1 cut(s) 406
MunI CAATTG 1 cut(s) 1044
MvaI CCWGG 1 cut(s) 406
MvnI CGCG 3 cut(s) 69, 314, 636
MwoI GCNNNNNNNGC 9 cut(s) 50, 89, 269, 295, 304, 313, 494, 548, 1037
NdeII GATC 5 cut(s) 856, 889, 907, 971, 996
NlaIII CATG 5 cut(s) 354, 379, 391, 548, 785
NlaIV GGNNCC 4 cut(s) 184, 385, 712, 876
NmeAIII GCCGAG 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 862
NsiI ATGCAT 1 cut(s) 399
NspI RCATGY 2 cut(s) 354, 785
PaeR7I CTCGAG 1 cut(s) 299
PaqCI CACCTGC 1 cut(s) 482
PciI ACATGT 1 cut(s) 781
PcsI WCGNNNNNNNCGW 5 cut(s) 186, 210, 219, 306, 318
PfeI GAWTC 4 cut(s) 30, 138, 174, 356
PflFI GACNNNGTC 1 cut(s) 221
PflMI CCANNNNNTGG 1 cut(s) 420
PinAI ACCGGT 1 cut(s) 444
PkrI GCNGC 7 cut(s) 41, 274, 349, 372, 490, 638, 757
PscI ACATGT 1 cut(s) 781
PshAI GACNNNNGTC 1 cut(s) 623
Psp1406I AACGTT 1 cut(s) 776
Psp6I CCWGG 1 cut(s) 404
PspFI CCCAGC 1 cut(s) 656
PspGI CCWGG 1 cut(s) 404
PspN4I GGNNCC 4 cut(s) 184, 385, 712, 876
PspPI GGNCC 2 cut(s) 261, 638
PstNI CAGNNNCTG 1 cut(s) 845
PsuI RGATCY 2 cut(s) 907, 971
PsyI GACNNNGTC 1 cut(s) 221
RsaI GTAC 4 cut(s) 385, 572, 766, 876
RsaNI GTAC 4 cut(s) 384, 571, 765, 875
RseI CAYNNNNRTG 2 cut(s) 392, 786
SalI GTCGAC 2 cut(s) 122, 215
SaqAI TTAA 4 cut(s) 525, 648, 963, 1081
SatI GCNGC 7 cut(s) 40, 273, 348, 371, 489, 637, 756
Sau3AI GATC 5 cut(s) 856, 889, 907, 971, 996
Sau96I GGNCC 2 cut(s) 261, 638
ScrFI CCNGG 1 cut(s) 406
SduI GDGCHC 1 cut(s) 553
SfaNI GCATC 9 cut(s) 384, 406, 427, 484, 529, 550, 585, 1018, 1049
SfcI CTRYAG 1 cut(s) 831
Sfr274I CTCGAG 1 cut(s) 299
SgrDI CGTCGACG 1 cut(s) 215
SlaI CTCGAG 1 cut(s) 299
SmiMI CAYNNNNRTG 2 cut(s) 392, 786
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 1 cut(s) 1044
SsiI CCGC 4 cut(s) 8, 273, 347, 636
SspI AATATT 1 cut(s) 1079
SspMI CTAG 2 cut(s) 35, 1019
StyD4I CCNGG 1 cut(s) 404
StyI CCWWGG 2 cut(s) 34, 144
TaaI ACNGT 2 cut(s) 622, 961
TaiI ACGT 3 cut(s) 216, 324, 779
TaqI TCGA 6 cut(s) 123, 136, 216, 300, 464, 1026
TasI AATT 1 cut(s) 1044
TauI GCSGC 3 cut(s) 275, 350, 639
TfiI GAWTC 4 cut(s) 30, 138, 174, 356
Tru1I TTAA 4 cut(s) 525, 648, 963, 1081
Tru9I TTAA 4 cut(s) 525, 648, 963, 1081
TscAI CASTG 5 cut(s) 263, 367, 695, 725, 793
TseFI GTSAC 1 cut(s) 862
TseI GCWGC 4 cut(s) 39, 370, 488, 755
Tsp45I GTSAC 1 cut(s) 862
TspDTI ATGAA 2 cut(s) 621, 666
TspGWI ACGGA 1 cut(s) 109
TspRI CASTG 5 cut(s) 263, 367, 695, 725, 793
Tth111I GACNNNGTC 1 cut(s) 221
Van91I CCANNNNNTGG 1 cut(s) 420
XceI RCATGY 2 cut(s) 354, 785
XhoI CTCGAG 1 cut(s) 299
XmaJI CCTAGG 1 cut(s) 34
XmiI GTMKAC 3 cut(s) 123, 216, 225
XspI CTAG 2 cut(s) 35, 1019
ZraI GACGTC 1 cut(s) 214
Zsp2I ATGCAT 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.