Prupe.3G163700_v2.0.a1

Oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0003907
Physical Location & Seq
Forward (+)
18310516 .. 18312504
1989 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G163700.1

Sequence Viewer

Length: 1086 bp
ATGGCTGAAAACCAAACAGTCCGTTTCGGCATTATAGGATGTGCCGGCATAGCTAGAAAAGTGGCTCGAGCCATAAAGCTCGCACCGAATTCCACCCTCTACGCCATTGCCAGCCGTTCGATCGAGAAAGCCCAGAAATTCGCCGGCAACAATGGATTATCTGGGACCGTCAAGACCTACGGGAGCTATGATCAGCTGCTGGATGACCCATGTGTAGATGCAGTGTACATGCCCCTTCCCACTAGTCTTCATCTGCACTGGGCAGTGTTAGCTGCCCAAAAGAAGAAGCACTTGCTGCTGGAAAAACCAACGGCTCTTGATGTGGGCGAGCTTGATCAGATATTGGAAGCATGTGAATCCAACGGTGTACAGTTCATGGATGGGAGCATGTGGCTGCATCACCCTAGGACAGCCAAATTGAAGGAGCTCATCTCTGAATCCAACCATTTTGGTCAAATTAACATTATCCGTAGCACATCGACAAAGTCAGTAACCCAGGATTTTCGGGAGGGCAACATAAGAGTGAAACCGGACTTGGATGCTCTCGGTGCGCTTGGGGACCTAGGCTGGTACTGTATTGGGGCCATCTTGTGGGCAAAGGACTACAAATTACCAACTCTAGTGAATGCTCTGCCTGATGTCACAAAAAACTCTGCAGGGGTCATCTTGTCTTGCACTGCATCATTTCATTGGGAACCATTAGAAGAAACGGTTGCAACGATTCACTGCTCTTTTCTTTCCCACACATCCATGGACTTGGCTATATCGGGCTGCAATGGTTCGCTGCACTGCAACGACTACATTATTCCATACCAAGAGAAATCTGCTTCGTTTGCCTTCACATCCGGTGCAACGTTCTTGGAACACCATACTGGGTGGAATGTAAAGCCTGAAGAAGTTAGAGTGATTTCTGAGCTGCCGCAAGAGGCCTTGATGGTTGAAGAGTTTGCAAGGCTTGTTAAGGGCATTATGAAATTTGGACACCGTCCAGACAGTAAATGGCCCGAGATTAGTCGAAATACGCAGGTAGTATTGGATGCAGTGAAGAAATCCATTGATCTTGGTTGTAAACCTGTTAAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GFO_IDH_MocA

Protein Analysis

362

Amino Acids

39.73

Weight (kDa)

6.67

Isoelectric Point (pI)

28.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1015
AccB7I CCANNNNNTGG 1 cut(s) 591
AciI CCGC 1 cut(s) 920
AclI AACGTT 1 cut(s) 854
AcsI RAATTY 3 cut(s) 88, 137, 974
AcuI CTGAAG 1 cut(s) 912
AfaI GTAC 3 cut(s) 227, 369, 572
AfiI CCNNNNNNNGG 1 cut(s) 591
AgsI TTSAA 2 cut(s) 421, 941
AhlI ACTAGT 1 cut(s) 242
AjnI CCWGG 1 cut(s) 495
AjuI GAANNNNNNNTTGG 2 cut(s) 518, 550
AluBI AGCT 8 cut(s) 53, 79, 186, 196, 272, 331, 427, 916
AluI AGCT 8 cut(s) 53, 79, 186, 196, 272, 331, 427, 916
Alw21I GWGCWC 1 cut(s) 429
AlwNI CAGNNNCTG 1 cut(s) 199
Ama87I CYCGRG 2 cut(s) 66, 1004
AoxI GGCC 3 cut(s) 582, 927, 1001
ApeKI GCWGC 7 cut(s) 196, 272, 295, 394, 771, 784, 916
ApoI RAATTY 3 cut(s) 88, 137, 974
AspA2I CCTAGG 2 cut(s) 404, 562
AspLEI GCGC 1 cut(s) 553
AspS9I GGNCC 4 cut(s) 165, 559, 582, 1002
AsuHPI GGTGA 1 cut(s) 392
AvaI CYCGRG 2 cut(s) 66, 1004
AvaII GGWCC 2 cut(s) 165, 559
AvrII CCTAGG 2 cut(s) 404, 562
BanII GRGCYC 1 cut(s) 429
BbsI GAAGAC 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 429
BbvI GCAGC 7 cut(s) 183, 259, 282, 381, 758, 771, 903
BccI CCATC 3 cut(s) 374, 593, 928
BceAI ACGGC 2 cut(s) 99, 327
BciT130I CCWGG 1 cut(s) 497
BclI TGATCA 2 cut(s) 190, 334
BcuI ACTAGT 1 cut(s) 242
BfaI CTAG 5 cut(s) 54, 243, 405, 563, 620
BfmI CTRYAG 1 cut(s) 654
BfuAI ACCTGC 1 cut(s) 1015
BisI GCNGC 8 cut(s) 197, 273, 296, 395, 772, 785, 917, 920
BlnI CCTAGG 2 cut(s) 404, 562
BlsI GCNGC 8 cut(s) 198, 274, 297, 396, 773, 786, 918, 921
Bme1390I CCNGG 1 cut(s) 497
Bme18I GGWCC 2 cut(s) 165, 559
BmeT110I CYCGRG 2 cut(s) 66, 1004
BmgT120I GGNCC 4 cut(s) 165, 559, 582, 1002
BmiI GGNNCC 4 cut(s) 166, 560, 583, 696
BmrFI CCNGG 1 cut(s) 497
BmrI ACTGGG 2 cut(s) 268, 882
BmsI GCATC 5 cut(s) 208, 406, 529, 689, 1027
BmuI ACTGGG 2 cut(s) 268, 882
BpiI GAAGAC 1 cut(s) 239
BplI GAGNNNNNCTC 2 cut(s) 416, 448
BsaJI CCNNGG 4 cut(s) 404, 495, 562, 750
BsaWI WCCGGW 2 cut(s) 529, 845
Bsc4I CCNNNNNNNGG 1 cut(s) 591
Bse118I RCCGGY 2 cut(s) 44, 143
Bse1I ACTGG 2 cut(s) 263, 877
Bse3DI GCAATG 2 cut(s) 105, 781
BseBI CCWGG 1 cut(s) 497
BseDI CCNNGG 4 cut(s) 404, 495, 562, 750
BseGI GGATG 7 cut(s) 44, 208, 385, 544, 746, 842, 1042
BseLI CCNNNNNNNGG 1 cut(s) 591
BseMI GCAATG 2 cut(s) 105, 781
BseMII CTCAG 1 cut(s) 903
BseNI ACTGG 2 cut(s) 263, 877
BseXI GCAGC 7 cut(s) 183, 259, 282, 381, 758, 771, 903
BsgI GTGCAG 2 cut(s) 239, 770
Bsh1285I CGRYCG 1 cut(s) 123
BshFI GGCC 3 cut(s) 584, 929, 1003
BsiEI CGRYCG 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 429
BsiHKCI CYCGRG 2 cut(s) 66, 1004
BsiSI CCGG 4 cut(s) 45, 144, 530, 846
BslFI GGGAC 2 cut(s) 178, 572
BslI CCNNNNNNNGG 1 cut(s) 591
BsmFI GGGAC 2 cut(s) 178, 572
BsmI GAATGC 1 cut(s) 631
BsnI GGCC 3 cut(s) 584, 929, 1003
BsoBI CYCGRG 2 cut(s) 66, 1004
Bsp1286I GDGCHC 1 cut(s) 429
Bsp1407I TGTACA 2 cut(s) 225, 367
Bsp143I GATC 4 cut(s) 120, 190, 334, 1057
Bsp19I CCATGG 1 cut(s) 750
BspACI CCGC 1 cut(s) 920
BspANI GGCC 3 cut(s) 584, 929, 1003
BspCNI CTCAG 1 cut(s) 904
BspLI GGNNCC 4 cut(s) 166, 560, 583, 696
BspMAI CTGCAG 1 cut(s) 658
BspMI ACCTGC 1 cut(s) 1015
BsrDI GCAATG 2 cut(s) 105, 781
BsrFI RCCGGY 2 cut(s) 44, 143
BsrGI TGTACA 2 cut(s) 225, 367
BsrI ACTGG 2 cut(s) 263, 877
BssAI RCCGGY 2 cut(s) 44, 143
BssECI CCNNGG 4 cut(s) 404, 495, 562, 750
BssMI GATC 4 cut(s) 120, 190, 334, 1057
BssT1I CCWWGG 3 cut(s) 404, 562, 750
Bst2UI CCWGG 1 cut(s) 497
Bst4CI ACNGT 8 cut(s) 19, 169, 365, 372, 575, 712, 986, 995
Bst6I CTCTTC 1 cut(s) 936
BstAPI GCANNNNNTGC 1 cut(s) 295
BstAUI TGTACA 2 cut(s) 225, 367
BstC8I GCNNGC 5 cut(s) 46, 81, 112, 145, 329
BstDEI CTNAG 1 cut(s) 912
BstDSI CCRYGG 1 cut(s) 750
BstF5I GGATG 7 cut(s) 44, 208, 385, 544, 746, 842, 1042
BstHHI GCGC 1 cut(s) 553
BstKTI GATC 4 cut(s) 123, 193, 337, 1060
BstMBI GATC 4 cut(s) 120, 190, 334, 1057
BstMCI CGRYCG 1 cut(s) 123
BstMWI GCNNNNNNNGC 5 cut(s) 50, 269, 295, 548, 833
BstNI CCWGG 1 cut(s) 497
BstNSI RCATGY 3 cut(s) 232, 354, 391
BstSCI CCNGG 1 cut(s) 495
BstSFI CTRYAG 1 cut(s) 654
BstV1I GCAGC 7 cut(s) 183, 259, 282, 381, 758, 771, 903
BstV2I GAAGAC 1 cut(s) 239
BstXI CCANNNNNNTGG 1 cut(s) 757
BsuRI GGCC 3 cut(s) 584, 929, 1003
BtgI CCRYGG 1 cut(s) 750
BtsCI GGATG 7 cut(s) 44, 208, 385, 544, 746, 842, 1042
BtsI GCAGTG 6 cut(s) 228, 270, 675, 724, 787, 1047
BtsIMutI CAGTG 7 cut(s) 228, 256, 270, 675, 724, 787, 1047
BveI ACCTGC 1 cut(s) 1015
Cac8I GCNNGC 5 cut(s) 46, 81, 112, 145, 329
CaiI CAGNNNCTG 1 cut(s) 199
CfoI GCGC 1 cut(s) 553
Cfr10I RCCGGY 2 cut(s) 44, 143
Cfr13I GGNCC 4 cut(s) 165, 559, 582, 1002
Csp6I GTAC 3 cut(s) 226, 368, 571
CviAII CATG 6 cut(s) 210, 229, 351, 376, 388, 751
CviQI GTAC 3 cut(s) 226, 368, 571
DdeI CTNAG 1 cut(s) 912
DpnI GATC 4 cut(s) 122, 192, 336, 1059
DpnII GATC 4 cut(s) 120, 190, 334, 1057
Eam1104I CTCTTC 1 cut(s) 936
EarI CTCTTC 1 cut(s) 936
Ecl136II GAGCTC 1 cut(s) 427
Eco130I CCWWGG 3 cut(s) 404, 562, 750
Eco147I AGGCCT 1 cut(s) 929
Eco24I GRGCYC 1 cut(s) 429
Eco47I GGWCC 2 cut(s) 165, 559
Eco53kI GAGCTC 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 912
Eco88I CYCGRG 2 cut(s) 66, 1004
EcoICRI GAGCTC 1 cut(s) 427
EcoO109I RGGNCCY 1 cut(s) 559
EcoRI GAATTC 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 495
EcoT14I CCWWGG 3 cut(s) 404, 562, 750
EcoT38I GRGCYC 1 cut(s) 429
ErhI CCWWGG 3 cut(s) 404, 562, 750
FaeI CATG 6 cut(s) 213, 232, 354, 379, 391, 754
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FaqI GGGAC 2 cut(s) 178, 572
FatI CATG 6 cut(s) 209, 228, 350, 375, 387, 750
FbaI TGATCA 2 cut(s) 190, 334
Fnu4HI GCNGC 8 cut(s) 197, 273, 296, 395, 772, 785, 917, 920
FokI GGATG 7 cut(s) 51, 215, 392, 551, 733, 829, 1049
FriOI GRGCYC 1 cut(s) 429
Fsp4HI GCNGC 8 cut(s) 197, 273, 296, 395, 772, 785, 917, 920
FspBI CTAG 5 cut(s) 54, 243, 405, 563, 620
GlaI GCGC 1 cut(s) 552
GluI GCNGC 8 cut(s) 197, 273, 296, 395, 772, 785, 917, 920
HaeIII GGCC 3 cut(s) 584, 929, 1003
HapII CCGG 4 cut(s) 45, 144, 530, 846
HhaI GCGC 1 cut(s) 553
Hin1II CATG 6 cut(s) 213, 232, 354, 379, 391, 754
Hin6I GCGC 1 cut(s) 551
HinP1I GCGC 1 cut(s) 551
HinfI GANTC 3 cut(s) 356, 437, 721
HpaII CCGG 4 cut(s) 45, 144, 530, 846
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 3 cut(s) 226, 368, 1070
Hpy188I TCNGA 3 cut(s) 339, 436, 913
Hpy188III TCNNGA 5 cut(s) 124, 172, 317, 506, 989
Hpy8I GTNNAC 3 cut(s) 226, 368, 1070
HpyAV CCTTC 3 cut(s) 245, 415, 847
HpyCH4III ACNGT 8 cut(s) 19, 169, 365, 372, 575, 712, 986, 995
HpyCH4IV ACGT 1 cut(s) 854
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 269, 295, 548, 833
HpyF3I CTNAG 1 cut(s) 912
HpySE526I ACGT 1 cut(s) 854
Hsp92II CATG 6 cut(s) 213, 232, 354, 379, 391, 754
HspAI GCGC 1 cut(s) 551
KroI GCCGGC 2 cut(s) 44, 143
KroNI GCCGGC 2 cut(s) 46, 145
Ksp22I TGATCA 2 cut(s) 190, 334
Kzo9I GATC 4 cut(s) 120, 190, 334, 1057
LmnI GCTCC 3 cut(s) 183, 384, 424
Lsp1109I GCAGC 7 cut(s) 183, 259, 282, 381, 758, 771, 903
LweI GCATC 5 cut(s) 208, 406, 529, 689, 1027
MaeI CTAG 5 cut(s) 54, 243, 405, 563, 620
MaeII ACGT 1 cut(s) 854
MaeIII GTNAC 2 cut(s) 490, 640
MalI GATC 4 cut(s) 122, 192, 336, 1059
MboI GATC 4 cut(s) 120, 190, 334, 1057
MboII GAAGA 6 cut(s) 239, 295, 716, 905, 953, 1057
MhlI GDGCHC 1 cut(s) 429
MluCI AATT 6 cut(s) 88, 137, 416, 456, 608, 974
MmeI TCCRAC 2 cut(s) 384, 465
MnlI CCTC 3 cut(s) 107, 502, 919
MroNI GCCGGC 2 cut(s) 44, 143
MseI TTAA 3 cut(s) 459, 960, 1077
MslI CAYNNNNRTG 2 cut(s) 521, 749
MspA1I CMGCKG 1 cut(s) 196
MspI CCGG 4 cut(s) 45, 144, 530, 846
MspR9I CCNGG 1 cut(s) 497
Mva1269I GAATGC 1 cut(s) 631
MvaI CCWGG 1 cut(s) 497
MwoI GCNNNNNNNGC 5 cut(s) 50, 269, 295, 548, 833
NaeI GCCGGC 2 cut(s) 46, 145
NcoI CCATGG 1 cut(s) 750
NdeII GATC 4 cut(s) 120, 190, 334, 1057
NgoMIV GCCGGC 2 cut(s) 44, 143
NlaIII CATG 6 cut(s) 213, 232, 354, 379, 391, 754
NlaIV GGNNCC 4 cut(s) 166, 560, 583, 696
NmuCI GTSAC 1 cut(s) 640
NspI RCATGY 3 cut(s) 232, 354, 391
PaeR7I CTCGAG 1 cut(s) 66
PceI AGGCCT 1 cut(s) 929
PcsI WCGNNNNNNNCGW 1 cut(s) 716
PctI GAATGC 1 cut(s) 631
PdiI GCCGGC 2 cut(s) 46, 145
PfeI GAWTC 3 cut(s) 356, 437, 721
PflFI GACNNNGTC 2 cut(s) 484, 984
PflMI CCANNNNNTGG 1 cut(s) 591
PkrI GCNGC 8 cut(s) 198, 274, 297, 396, 773, 786, 918, 921
Ple19I CGATCG 1 cut(s) 123
PpuMI RGGWCCY 1 cut(s) 559
Psp124BI GAGCTC 1 cut(s) 429
Psp1406I AACGTT 1 cut(s) 854
Psp5II RGGWCCY 1 cut(s) 559
Psp6I CCWGG 1 cut(s) 495
PspGI CCWGG 1 cut(s) 495
PspN4I GGNNCC 4 cut(s) 166, 560, 583, 696
PspPI GGNCC 4 cut(s) 165, 559, 582, 1002
PspPPI RGGWCCY 1 cut(s) 559
PspXI VCTCGAGB 1 cut(s) 66
PstI CTGCAG 1 cut(s) 658
PstNI CAGNNNCTG 1 cut(s) 199
PsyI GACNNNGTC 2 cut(s) 484, 984
PvuI CGATCG 1 cut(s) 123
PvuII CAGCTG 1 cut(s) 196
RsaI GTAC 3 cut(s) 227, 369, 572
RsaNI GTAC 3 cut(s) 226, 368, 571
RseI CAYNNNNRTG 2 cut(s) 521, 749
SacI GAGCTC 1 cut(s) 429
SaqAI TTAA 3 cut(s) 459, 960, 1077
SatI GCNGC 8 cut(s) 197, 273, 296, 395, 772, 785, 917, 920
Sau3AI GATC 4 cut(s) 120, 190, 334, 1057
Sau96I GGNCC 4 cut(s) 165, 559, 582, 1002
ScrFI CCNGG 1 cut(s) 497
SduI GDGCHC 1 cut(s) 429
SfaNI GCATC 5 cut(s) 208, 406, 529, 689, 1027
SfcI CTRYAG 1 cut(s) 654
Sfr274I CTCGAG 1 cut(s) 66
SinI GGWCC 2 cut(s) 165, 559
SlaI CTCGAG 1 cut(s) 66
SmiMI CAYNNNNRTG 2 cut(s) 521, 749
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
SpeI ACTAGT 1 cut(s) 242
Sse9I AATT 6 cut(s) 88, 137, 416, 456, 608, 974
SseBI AGGCCT 1 cut(s) 929
SsiI CCGC 1 cut(s) 920
SspMI CTAG 5 cut(s) 54, 243, 405, 563, 620
SstI GAGCTC 1 cut(s) 429
StuI AGGCCT 1 cut(s) 929
StyD4I CCNGG 1 cut(s) 495
StyI CCWWGG 3 cut(s) 404, 562, 750
TaaI ACNGT 8 cut(s) 19, 169, 365, 372, 575, 712, 986, 995
TaiI ACGT 1 cut(s) 857
TaqI TCGA 5 cut(s) 67, 119, 123, 479, 1015
TasI AATT 6 cut(s) 88, 137, 416, 456, 608, 974
TatI WGTACW 2 cut(s) 225, 367
TauI GCSGC 1 cut(s) 922
TfiI GAWTC 3 cut(s) 356, 437, 721
Tru1I TTAA 3 cut(s) 459, 960, 1077
Tru9I TTAA 3 cut(s) 459, 960, 1077
TscAI CASTG 7 cut(s) 228, 263, 270, 682, 731, 794, 1047
TseFI GTSAC 1 cut(s) 640
TseI GCWGC 7 cut(s) 196, 272, 295, 394, 771, 784, 916
Tsp45I GTSAC 1 cut(s) 640
TspDTI ATGAA 4 cut(s) 239, 364, 677, 986
TspGWI ACGGA 2 cut(s) 11, 458
TspRI CASTG 7 cut(s) 228, 263, 270, 682, 731, 794, 1047
Tth111I GACNNNGTC 2 cut(s) 484, 984
Van91I CCANNNNNTGG 1 cut(s) 591
VpaK11BI GGWCC 2 cut(s) 165, 559
XapI RAATTY 3 cut(s) 88, 137, 974
XceI RCATGY 3 cut(s) 232, 354, 391
XcmI CCANNNNNNNNNTGG 1 cut(s) 996
XhoI CTCGAG 1 cut(s) 66
XmaJI CCTAGG 2 cut(s) 404, 562
XspI CTAG 5 cut(s) 54, 243, 405, 563, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.