RchiOBHm_Chr3g0492491

Oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0003907
Physical Location & Seq
Reverse (-)
39288867 .. 39290936
2070 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45538

Sequence Viewer

Length: 1227 bp
ATGAGACCCAAGATGATGAGGCCCAAAGACCCGCCAAATCACTTCACCATCTCAACATATGAGGAGTGGATAAGACGATACTTTCACACACTGCACCACACACACAAAGGCCAAGAACCAGAACCAGAAGCAATGTCTGAAAACCCAAAAATACGTTTCGGCATATTAGGATGTGCGGACATAGCTAGAAAGGTAGCTCGCGCCATAAACCTGGCACCCAATTCGACCCTGTACGCCATTGCGAGCCGCTCCATCGAGAAAGCCCACAAATTCGCAGCCAACAATGGACTGTCCACTCAGACCCTCAACGTCTACGGCAGCTATGATCAGCTTCTCGATGACCCATGTGTCGATGCTGTGTACGTGCCTCTGCCCACTAGTCTTCACCTTCACTGGGCTGTCTTGGCTGCCCGCAAGAAGAAGCACTTGCTCTTGGAAAAACCAGCGGCTCTTGATGTGGGTGAGCTTGATCAGATACTCCAAGCTTGCCAATCCAACGGTGTACAGTTCATGAGTGGGAGTATGTGGCTGCATCACCCTAGGACTGCCAAATTGAAGGACTTGATCTCTGATTCCAAGCTCTTTGGTCAAATCAACTACATTCATAGCTCATCAACACTTCCAGGAACCAAGGAATTTTTTGAGAACAACATAAGAGTGAAACCAGATTTAGATGCTCTCGGTGCGCTTGGGGCCCTAGGCTGGTACTGCATTGAAGCCATTTTGTGGGCTAAGGACTACCAACTACCAACTATAGTCACTGCTCTACCAGATGTCACAAAAAACTCTGCAGGGGTCATCTTGTCTTTCACTGCATCAATTCAATGGGAACCACTGGACCCAACTGTTGCAACAATTCACTGTTCTTTCCTCTCCCACACATCCATGGACTTGGCTATATCTGCTTCTAATGGTACAGTGCGTTGCAATGACTACATCATTCCATATGCTGAGAACTATTCTTCATTTGAATTCACAACCGGTGCAAAGTTTGCGGAACTCCACATTGGGTGGAGTGTAGTACCTGAAGAAGTTAGAGTGGTTTCTCAGCTGCCTCAAGAGGCCTTGATGGTTCAAGAGCTCTCAAGGCTTGCCGAGGGCATCAGGGAATTTGGGTGTAATCCGGACCAAAAATGGCCACAAATCAGCAGAAATACACAATTAGTATTGGATGCAGTGAAGAAATCCATTGATCTTGGTTTTGAACCTGTTAGGGTGTTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GFO_IDH_MocA

Protein Analysis

408

Amino Acids

45.62

Weight (kDa)

6.43

Isoelectric Point (pI)

35.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GFO_IDH_MocA PF01408 51 - 173 9.3e-21 Oxidoreductase family, NAD-binding Rossmann fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 347
AccB1I GGYRCC 1 cut(s) 214
AccB7I CCANNNNNTGG 1 cut(s) 726
AccBSI CCGCTC 1 cut(s) 249
AccI GTMKAC 1 cut(s) 312
AccII CGCG 1 cut(s) 201
AccIII TCCGGA 1 cut(s) 1123
AciI CCGC 6 cut(s) 32, 176, 247, 412, 446, 995
AcoI YGGCCR 1 cut(s) 1136
AcsI RAATTY 4 cut(s) 269, 635, 971, 1109
AcuI CTGAAG 1 cut(s) 1047
AfaI GTAC 6 cut(s) 233, 362, 504, 707, 916, 1023
AfiI CCNNNNNNNGG 3 cut(s) 394, 702, 726
AgeI ACCGGT 1 cut(s) 980
AgsI TTSAA 6 cut(s) 556, 716, 824, 971, 1076, 1205
AhlI ACTAGT 1 cut(s) 377
AjnI CCWGG 2 cut(s) 210, 622
AjuI GAANNNNNNNTTGG 2 cut(s) 990, 1022
Alw21I GWGCWC 1 cut(s) 1083
Aor13HI TCCGGA 1 cut(s) 1123
AoxI GGCC 5 cut(s) 20, 109, 693, 1062, 1136
ApaI GGGCCC 1 cut(s) 697
ApeKI GCWGC 5 cut(s) 275, 318, 407, 529, 1051
ApoI RAATTY 4 cut(s) 269, 635, 971, 1109
AsiGI ACCGGT 1 cut(s) 980
AspA2I CCTAGG 2 cut(s) 539, 697
AspLEI GCGC 2 cut(s) 203, 688
AspS9I GGNCC 5 cut(s) 21, 693, 694, 838, 1126
AsuHPI GGTGA 4 cut(s) 37, 377, 473, 527
AvaII GGWCC 2 cut(s) 838, 1126
AvrII CCTAGG 2 cut(s) 539, 697
BaeGI GKGCMC 1 cut(s) 697
BalI TGGCCA 1 cut(s) 1138
BanI GGYRCC 1 cut(s) 214
BanII GRGCYC 2 cut(s) 697, 1083
BbsI GAAGAC 1 cut(s) 374
Bbv12I GWGCWC 1 cut(s) 1083
BbvI GCAGC 5 cut(s) 287, 330, 394, 516, 1038
BccI CCATC 3 cut(s) 56, 260, 1063
BceAI ACGGC 1 cut(s) 331
BcgI CGANNNNNNTGC 2 cut(s) 204, 238
BciT130I CCWGG 2 cut(s) 212, 624
BclI TGATCA 2 cut(s) 325, 469
BcuI ACTAGT 1 cut(s) 377
BfaI CTAG 4 cut(s) 186, 378, 540, 698
BfmI CTRYAG 2 cut(s) 753, 789
BisI GCNGC 7 cut(s) 247, 276, 319, 408, 447, 530, 1052
BlnI CCTAGG 2 cut(s) 539, 697
BlsI GCNGC 7 cut(s) 248, 277, 320, 409, 448, 531, 1053
Bme1390I CCNGG 2 cut(s) 212, 624
Bme18I GGWCC 2 cut(s) 838, 1126
BmgT120I GGNCC 5 cut(s) 21, 693, 694, 838, 1126
BmiI GGNNCC 6 cut(s) 216, 628, 694, 695, 831, 840
BmrFI CCNGG 2 cut(s) 212, 624
BmrI ACTGGG 1 cut(s) 403
BmsI GCATC 6 cut(s) 343, 541, 664, 824, 1110, 1162
BmuI ACTGGG 1 cut(s) 403
BpiI GAAGAC 1 cut(s) 374
Bpu10I CCTNAGC 1 cut(s) 732
BpuEI CTTGAG 2 cut(s) 1041, 1069
BsaAI YACGTR 1 cut(s) 364
BsaJI CCNNGG 5 cut(s) 539, 630, 697, 885, 1095
BsaWI WCCGGW 2 cut(s) 980, 1123
Bsc4I CCNNNNNNNGG 3 cut(s) 394, 702, 726
Bse118I RCCGGY 1 cut(s) 980
Bse1I ACTGG 2 cut(s) 398, 840
Bse3DI GCAATG 3 cut(s) 138, 237, 934
BseAI TCCGGA 1 cut(s) 1123
BseBI CCWGG 2 cut(s) 212, 624
BseDI CCNNGG 5 cut(s) 539, 630, 697, 885, 1095
BseGI GGATG 3 cut(s) 176, 881, 1177
BseLI CCNNNNNNNGG 3 cut(s) 394, 702, 726
BseMI GCAATG 3 cut(s) 138, 237, 934
BseMII CTCAG 3 cut(s) 311, 942, 1061
BseNI ACTGG 2 cut(s) 398, 840
BseRI GAGGAG 1 cut(s) 77
BseSI GKGCMC 1 cut(s) 697
BseXI GCAGC 5 cut(s) 287, 330, 394, 516, 1038
BsgI GTGCAG 1 cut(s) 77
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 5 cut(s) 22, 111, 695, 1064, 1138
BshNI GGYRCC 1 cut(s) 214
BshTI ACCGGT 1 cut(s) 980
BsiHKAI GWGCWC 1 cut(s) 1083
BsiSI CCGG 2 cut(s) 981, 1124
BslI CCNNNNNNNGG 3 cut(s) 394, 702, 726
BsnI GGCC 5 cut(s) 22, 111, 695, 1064, 1138
Bsp120I GGGCCC 1 cut(s) 693
Bsp1286I GDGCHC 2 cut(s) 697, 1083
Bsp13I TCCGGA 1 cut(s) 1123
Bsp1407I TGTACA 1 cut(s) 502
Bsp143I GATC 4 cut(s) 325, 469, 564, 1192
Bsp19I CCATGG 1 cut(s) 885
BspACI CCGC 6 cut(s) 32, 176, 247, 412, 446, 995
BspANI GGCC 5 cut(s) 22, 111, 695, 1064, 1138
BspCNI CTCAG 3 cut(s) 310, 943, 1060
BspEI TCCGGA 1 cut(s) 1123
BspFNI CGCG 1 cut(s) 201
BspHI TCATGA 1 cut(s) 510
BspLI GGNNCC 6 cut(s) 216, 628, 694, 695, 831, 840
BspMAI CTGCAG 1 cut(s) 793
BspT107I GGYRCC 1 cut(s) 214
BsrBI CCGCTC 1 cut(s) 249
BsrDI GCAATG 3 cut(s) 138, 237, 934
BsrFI RCCGGY 1 cut(s) 980
BsrGI TGTACA 1 cut(s) 502
BsrI ACTGG 2 cut(s) 398, 840
BssAI RCCGGY 1 cut(s) 980
BssECI CCNNGG 5 cut(s) 539, 630, 697, 885, 1095
BssMI GATC 4 cut(s) 325, 469, 564, 1192
BssT1I CCWWGG 4 cut(s) 539, 630, 697, 885
Bst2UI CCWGG 2 cut(s) 212, 624
Bst4CI ACNGT 6 cut(s) 291, 500, 507, 847, 863, 919
BstAPI GCANNNNNTGC 1 cut(s) 992
BstAUI TGTACA 1 cut(s) 502
BstBAI YACGTR 1 cut(s) 364
BstC8I GCNNGC 5 cut(s) 199, 244, 412, 487, 1092
BstDEI CTNAG 4 cut(s) 297, 732, 951, 1047
BstDSI CCRYGG 1 cut(s) 885
BstF5I GGATG 3 cut(s) 176, 881, 1177
BstFNI CGCG 1 cut(s) 201
BstHHI GCGC 2 cut(s) 203, 688
BstKTI GATC 4 cut(s) 328, 472, 567, 1195
BstMBI GATC 4 cut(s) 325, 469, 564, 1192
BstMWI GCNNNNNNNGC 8 cut(s) 182, 404, 683, 692, 708, 902, 992, 1087
BstNI CCWGG 2 cut(s) 212, 624
BstSCI CCNGG 2 cut(s) 210, 622
BstSFI CTRYAG 2 cut(s) 753, 789
BstSLI GKGCMC 1 cut(s) 697
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 5 cut(s) 287, 330, 394, 516, 1038
BstV2I GAAGAC 1 cut(s) 374
BstXI CCANNNNNNTGG 2 cut(s) 211, 892
BsuRI GGCC 5 cut(s) 22, 111, 695, 1064, 1138
BtgI CCRYGG 1 cut(s) 885
BtsCI GGATG 3 cut(s) 176, 881, 1177
BtsI GCAGTG 4 cut(s) 89, 759, 810, 1182
BtsIMutI CAGTG 8 cut(s) 89, 391, 759, 810, 833, 859, 924, 1182
Cac8I GCNNGC 5 cut(s) 199, 244, 412, 487, 1092
CciI TCATGA 1 cut(s) 510
CfoI GCGC 2 cut(s) 203, 688
Cfr10I RCCGGY 1 cut(s) 980
Cfr13I GGNCC 5 cut(s) 21, 693, 694, 838, 1126
Csp6I GTAC 6 cut(s) 232, 361, 503, 706, 915, 1022
CspAI ACCGGT 1 cut(s) 980
CviAII CATG 3 cut(s) 345, 511, 886
CviQI GTAC 6 cut(s) 232, 361, 503, 706, 915, 1022
DdeI CTNAG 4 cut(s) 297, 732, 951, 1047
DpnI GATC 4 cut(s) 327, 471, 566, 1194
DpnII GATC 4 cut(s) 325, 469, 564, 1192
DrdI GACNNNNNNGTC 1 cut(s) 347
DseDI GACNNNNNNGTC 1 cut(s) 347
EaeI YGGCCR 1 cut(s) 1136
Ecl136II GAGCTC 1 cut(s) 1081
Eco130I CCWWGG 4 cut(s) 539, 630, 697, 885
Eco147I AGGCCT 1 cut(s) 1064
Eco24I GRGCYC 2 cut(s) 697, 1083
Eco47I GGWCC 2 cut(s) 838, 1126
Eco53kI GAGCTC 1 cut(s) 1081
Eco57I CTGAAG 1 cut(s) 1047
EcoICRI GAGCTC 1 cut(s) 1081
EcoO109I RGGNCCY 2 cut(s) 693, 694
EcoRI GAATTC 1 cut(s) 971
EcoRII CCWGG 2 cut(s) 210, 622
EcoT14I CCWWGG 4 cut(s) 539, 630, 697, 885
EcoT38I GRGCYC 2 cut(s) 697, 1083
ErhI CCWWGG 4 cut(s) 539, 630, 697, 885
FaeI CATG 3 cut(s) 348, 514, 889
FalI AAGNNNNNCTT 2 cut(s) 410, 442
FatI CATG 3 cut(s) 344, 510, 885
FauI CCCGC 2 cut(s) 39, 419
FauNDI CATATG 2 cut(s) 58, 946
FbaI TGATCA 2 cut(s) 325, 469
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 7 cut(s) 247, 276, 319, 408, 447, 530, 1052
FokI GGATG 3 cut(s) 183, 868, 1184
FriOI GRGCYC 2 cut(s) 697, 1083
Fsp4HI GCNGC 7 cut(s) 247, 276, 319, 408, 447, 530, 1052
FspBI CTAG 4 cut(s) 186, 378, 540, 698
GlaI GCGC 2 cut(s) 202, 687
GluI GCNGC 7 cut(s) 247, 276, 319, 408, 447, 530, 1052
HaeIII GGCC 5 cut(s) 22, 111, 695, 1064, 1138
HapII CCGG 2 cut(s) 981, 1124
HhaI GCGC 2 cut(s) 203, 688
Hin1II CATG 3 cut(s) 348, 514, 889
Hin6I GCGC 2 cut(s) 201, 686
HinP1I GCGC 2 cut(s) 201, 686
HindIII AAGCTT 1 cut(s) 483
HinfI GANTC 1 cut(s) 572
HpaII CCGG 2 cut(s) 981, 1124
HphI GGTGA 4 cut(s) 37, 377, 473, 527
Hpy166II GTNNAC 4 cut(s) 294, 313, 361, 503
Hpy188I TCNGA 4 cut(s) 139, 300, 474, 571
Hpy188III TCNNGA 7 cut(s) 256, 335, 452, 511, 1058, 1076, 1124
Hpy8I GTNNAC 4 cut(s) 294, 313, 361, 503
HpyAV CCTTC 2 cut(s) 398, 550
HpyCH4III ACNGT 6 cut(s) 291, 500, 507, 847, 863, 919
HpyCH4IV ACGT 3 cut(s) 154, 309, 363
HpyCH4V TGCA 9 cut(s) 94, 532, 711, 791, 815, 851, 927, 986, 1175
HpyF10VI GCNNNNNNNGC 8 cut(s) 182, 404, 683, 692, 708, 902, 992, 1087
HpyF3I CTNAG 4 cut(s) 297, 732, 951, 1047
HpySE526I ACGT 3 cut(s) 154, 309, 363
Hsp92II CATG 3 cut(s) 348, 514, 889
HspAI GCGC 2 cut(s) 201, 686
Kpn2I TCCGGA 1 cut(s) 1123
Ksp22I TGATCA 2 cut(s) 325, 469
Kzo9I GATC 4 cut(s) 325, 469, 564, 1192
LmnI GCTCC 1 cut(s) 254
Lsp1109I GCAGC 5 cut(s) 287, 330, 394, 516, 1038
LweI GCATC 6 cut(s) 343, 541, 664, 824, 1110, 1162
MaeI CTAG 4 cut(s) 186, 378, 540, 698
MaeII ACGT 3 cut(s) 154, 309, 363
MaeIII GTNAC 2 cut(s) 757, 775
MalI GATC 4 cut(s) 327, 471, 566, 1194
MbiI CCGCTC 1 cut(s) 249
MboI GATC 4 cut(s) 325, 469, 564, 1192
MboII GAAGA 5 cut(s) 374, 430, 954, 1040, 1192
MhlI GDGCHC 2 cut(s) 697, 1083
MlsI TGGCCA 1 cut(s) 1138
MluCI AATT 9 cut(s) 220, 269, 551, 635, 819, 855, 971, 1109, 1160
MluNI TGGCCA 1 cut(s) 1138
MmeI TCCRAC 1 cut(s) 519
MnlI CCTC 8 cut(s) 12, 55, 314, 378, 881, 1054, 1065, 1090
Mox20I TGGCCA 1 cut(s) 1138
MroI TCCGGA 1 cut(s) 1123
MscI TGGCCA 1 cut(s) 1138
MslI CAYNNNNRTG 2 cut(s) 656, 884
Msp20I TGGCCA 1 cut(s) 1138
MspA1I CMGCKG 2 cut(s) 446, 1051
MspI CCGG 2 cut(s) 981, 1124
MspR9I CCNGG 2 cut(s) 212, 624
MvaI CCWGG 2 cut(s) 212, 624
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 8 cut(s) 182, 404, 683, 692, 708, 902, 992, 1087
NcoI CCATGG 1 cut(s) 885
NdeI CATATG 2 cut(s) 58, 946
NdeII GATC 4 cut(s) 325, 469, 564, 1192
NlaIII CATG 3 cut(s) 348, 514, 889
NlaIV GGNNCC 6 cut(s) 216, 628, 694, 695, 831, 840
NmeAIII GCCGAG 1 cut(s) 1120
NmuCI GTSAC 2 cut(s) 757, 775
PagI TCATGA 1 cut(s) 510
PceI AGGCCT 1 cut(s) 1064
PfeI GAWTC 1 cut(s) 572
PflMI CCANNNNNTGG 1 cut(s) 726
PfoI TCCNGGA 1 cut(s) 622
PinAI ACCGGT 1 cut(s) 980
PkrI GCNGC 7 cut(s) 248, 277, 320, 409, 448, 531, 1053
Ppu21I YACGTR 1 cut(s) 364
Psp124BI GAGCTC 1 cut(s) 1083
Psp6I CCWGG 2 cut(s) 210, 622
PspGI CCWGG 2 cut(s) 210, 622
PspN4I GGNNCC 6 cut(s) 216, 628, 694, 695, 831, 840
PspOMI GGGCCC 1 cut(s) 693
PspPI GGNCC 5 cut(s) 21, 693, 694, 838, 1126
PstI CTGCAG 1 cut(s) 793
PvuII CAGCTG 1 cut(s) 1051
RsaI GTAC 6 cut(s) 233, 362, 504, 707, 916, 1023
RsaNI GTAC 6 cut(s) 232, 361, 503, 706, 915, 1022
RseI CAYNNNNRTG 2 cut(s) 656, 884
SacI GAGCTC 1 cut(s) 1083
SatI GCNGC 7 cut(s) 247, 276, 319, 408, 447, 530, 1052
Sau3AI GATC 4 cut(s) 325, 469, 564, 1192
Sau96I GGNCC 5 cut(s) 21, 693, 694, 838, 1126
ScrFI CCNGG 2 cut(s) 212, 624
SduI GDGCHC 2 cut(s) 697, 1083
SfaNI GCATC 6 cut(s) 343, 541, 664, 824, 1110, 1162
SfcI CTRYAG 2 cut(s) 753, 789
SinI GGWCC 2 cut(s) 838, 1126
SmiMI CAYNNNNRTG 2 cut(s) 656, 884
SmlI CTYRAG 2 cut(s) 1056, 1084
SmoI CTYRAG 2 cut(s) 1056, 1084
SpeI ACTAGT 1 cut(s) 377
Sse9I AATT 9 cut(s) 220, 269, 551, 635, 819, 855, 971, 1109, 1160
SseBI AGGCCT 1 cut(s) 1064
SsiI CCGC 6 cut(s) 32, 176, 247, 412, 446, 995
SspMI CTAG 4 cut(s) 186, 378, 540, 698
SstI GAGCTC 1 cut(s) 1083
StuI AGGCCT 1 cut(s) 1064
StyD4I CCNGG 2 cut(s) 210, 622
StyI CCWWGG 4 cut(s) 539, 630, 697, 885
TaaI ACNGT 6 cut(s) 291, 500, 507, 847, 863, 919
TaiI ACGT 3 cut(s) 157, 312, 366
TaqI TCGA 4 cut(s) 224, 255, 336, 351
TasI AATT 9 cut(s) 220, 269, 551, 635, 819, 855, 971, 1109, 1160
TatI WGTACW 1 cut(s) 502
TauI GCSGC 2 cut(s) 249, 449
TfiI GAWTC 1 cut(s) 572
TscAI CASTG 8 cut(s) 96, 398, 766, 817, 840, 866, 924, 1182
TseFI GTSAC 2 cut(s) 757, 775
TseI GCWGC 5 cut(s) 275, 318, 407, 529, 1051
Tsp45I GTSAC 2 cut(s) 757, 775
TspDTI ATGAA 3 cut(s) 499, 593, 954
TspRI CASTG 8 cut(s) 96, 398, 766, 817, 840, 866, 924, 1182
Van91I CCANNNNNTGG 1 cut(s) 726
VpaK11BI GGWCC 2 cut(s) 838, 1126
XapI RAATTY 4 cut(s) 269, 635, 971, 1109
XmaJI CCTAGG 2 cut(s) 539, 697
XmiI GTMKAC 1 cut(s) 312
XspI CTAG 4 cut(s) 186, 378, 540, 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.