RLG00000022763

Oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0003907
Physical Location & Seq
Forward (+)
11827342 .. 11829640
2299 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022763

Sequence Viewer

Length: 1143 bp
ATGATACTTTCACTCGCTGCACCACACAAGGGCCAAGAACCAGAACCAGAAGCAATGTCTGAAAACCCAAAAATACGTTTCGGCATATTAGGATGTGCGGACATAGCTAGAAAGGTAGCTCGCGCCATAAACCTGGCACCCAATTCGACCCTGTACGCCATTGCGAGCCGCTCCATCGAGAAAGCCCACAAATTCGCAGCCAACAATGGACTGTCCACTCAGACCCTCAACATCTACGGCAGCTATGATCAGCTGCTCGATGACCCATGTGTCGATGCTGTGTACATGCCTCTGCCCACTAGTCTTCACCTTCACTGGGCTGTCTTGGCTGCCCGCAAGAAGAAGCACTTGCTCTTGGAAAAACCAGCGGCTCTTGATGTGGGTGAGCTTGATCAGATACTCCAAGCTTGCCAATCCAACGGTGTACAGTTCATGAGTGGGAGTATGTGGCTGCATCACCCTAGGACTGCCAAATTGAAGGACTTGATCTCTGATTCCAAGCTCTTTGGTCAAATCAACTACATTCATAGCTCATCAACACTTCCAGGAACCAAGGAATTTTTGGAGAACAACATTAGAGTGAAACCAGATTTAGATGCTCTCGGTGCGCTTGGGGACCTAGGCTGGTACTGCATTGAAGCCATTTTGTGGGCTAAGGACTACCAACTACCAACTATAGTCACTGCTCTACCAGATGTCACAAAAAACTCTGCAGGGGTCATTTTGTCTTTCACTGCATCAATTCAATGGGAACCACTGGACCCAACTGTTGCAACAATTCACTGTTCTTTCCTCTCCCACACATCCATGGACTTGGCTATATCTGCTTCTAATGGTACAGTGCGTTGCAATGACTACATCATTCCATATGCTGAGAACTATTCTTCATTTGAATTTACAACCGGTGCAAAGTTTGCGGAACTCCACATTGGGTGGAGTGTAGTACCTGAAGAAGTTATGGTGGTTTCTCAGCTGCCTCAAGAGGCCTTGATGGTTCAAGAGCTCTCAAGGCTTGCCGAGGGCATCAGGGAATTTGGGTGTAATCCGGACCAAATATGGCCACAAATCAGCAGAAATACACAATTAGTATTGGATGCCGTGAAGAAATCCATTGATCTTGGTTTTGAACCTGTTAGGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GFO_IDH_MocA

Protein Analysis

381

Amino Acids

41.84

Weight (kDa)

5.57

Isoelectric Point (pI)

38.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GFO_IDH_MocA PF01408 25 - 147 3.5e-19 Oxidoreductase family, NAD-binding Rossmann fold
GFO_IDH_MocA_C3 PF22725 158 - 281 3.1e-06 GFO/IDH/MocA C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 269
AccB1I GGYRCC 1 cut(s) 136
AccB7I CCANNNNNTGG 1 cut(s) 648
AccBSI CCGCTC 1 cut(s) 171
AccII CGCG 1 cut(s) 123
AccIII TCCGGA 1 cut(s) 1045
AciI CCGC 5 cut(s) 98, 169, 334, 368, 917
AcoI YGGCCR 1 cut(s) 1058
AcsI RAATTY 4 cut(s) 191, 557, 893, 1031
AcuI CTGAAG 1 cut(s) 969
AfaI GTAC 6 cut(s) 155, 284, 426, 629, 838, 945
AfiI CCNNNNNNNGG 3 cut(s) 29, 316, 648
AgeI ACCGGT 1 cut(s) 902
AgsI TTSAA 6 cut(s) 478, 638, 746, 893, 998, 1127
AhlI ACTAGT 1 cut(s) 299
AjnI CCWGG 2 cut(s) 132, 544
AjuI GAANNNNNNNTTGG 2 cut(s) 912, 944
Alw21I GWGCWC 1 cut(s) 1005
Aor13HI TCCGGA 1 cut(s) 1045
AoxI GGCC 3 cut(s) 31, 984, 1058
ApeKI GCWGC 7 cut(s) 17, 197, 240, 253, 329, 451, 973
ApoI RAATTY 4 cut(s) 191, 557, 893, 1031
AsiGI ACCGGT 1 cut(s) 902
AspA2I CCTAGG 2 cut(s) 461, 619
AspLEI GCGC 2 cut(s) 125, 610
AspS9I GGNCC 4 cut(s) 31, 616, 760, 1048
AsuHPI GGTGA 3 cut(s) 299, 395, 449
AvaII GGWCC 3 cut(s) 616, 760, 1048
AvrII CCTAGG 2 cut(s) 461, 619
BalI TGGCCA 1 cut(s) 1060
BanI GGYRCC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 1005
BbsI GAAGAC 1 cut(s) 296
Bbv12I GWGCWC 1 cut(s) 1005
BbvI GCAGC 7 cut(s) 4, 209, 240, 252, 316, 438, 960
BccI CCATC 2 cut(s) 182, 985
BceAI ACGGC 2 cut(s) 253, 1082
BcgI CGANNNNNNTGC 2 cut(s) 126, 160
BciT130I CCWGG 2 cut(s) 134, 546
BclI TGATCA 2 cut(s) 247, 391
BcuI ACTAGT 1 cut(s) 299
BfaI CTAG 4 cut(s) 108, 300, 462, 620
BfmI CTRYAG 2 cut(s) 675, 711
BisI GCNGC 9 cut(s) 18, 169, 198, 241, 254, 330, 369, 452, 974
BlnI CCTAGG 2 cut(s) 461, 619
BlsI GCNGC 9 cut(s) 19, 170, 199, 242, 255, 331, 370, 453, 975
Bme1390I CCNGG 2 cut(s) 134, 546
Bme18I GGWCC 3 cut(s) 616, 760, 1048
BmgT120I GGNCC 4 cut(s) 31, 616, 760, 1048
BmiI GGNNCC 5 cut(s) 138, 550, 617, 753, 762
BmrFI CCNGG 2 cut(s) 134, 546
BmrI ACTGGG 1 cut(s) 325
BmsI GCATC 6 cut(s) 265, 463, 586, 746, 1032, 1084
BmuI ACTGGG 1 cut(s) 325
BpiI GAAGAC 1 cut(s) 296
Bpu10I CCTNAGC 1 cut(s) 654
BpuEI CTTGAG 2 cut(s) 963, 991
BsaJI CCNNGG 5 cut(s) 461, 552, 619, 807, 1017
BsaWI WCCGGW 2 cut(s) 902, 1045
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 316, 648
Bse118I RCCGGY 1 cut(s) 902
Bse1I ACTGG 2 cut(s) 320, 762
Bse3DI GCAATG 3 cut(s) 60, 159, 856
BseAI TCCGGA 1 cut(s) 1045
BseBI CCWGG 2 cut(s) 134, 546
BseDI CCNNGG 5 cut(s) 461, 552, 619, 807, 1017
BseGI GGATG 3 cut(s) 98, 803, 1099
BseLI CCNNNNNNNGG 3 cut(s) 29, 316, 648
BseMI GCAATG 3 cut(s) 60, 159, 856
BseMII CTCAG 3 cut(s) 233, 864, 983
BseNI ACTGG 2 cut(s) 320, 762
BseXI GCAGC 7 cut(s) 4, 209, 240, 252, 316, 438, 960
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 3 cut(s) 33, 986, 1060
BshNI GGYRCC 1 cut(s) 136
BshTI ACCGGT 1 cut(s) 902
BsiHKAI GWGCWC 1 cut(s) 1005
BsiSI CCGG 2 cut(s) 903, 1046
BslFI GGGAC 1 cut(s) 629
BslI CCNNNNNNNGG 3 cut(s) 29, 316, 648
BsmFI GGGAC 1 cut(s) 629
BsnI GGCC 3 cut(s) 33, 986, 1060
Bsp1286I GDGCHC 1 cut(s) 1005
Bsp13I TCCGGA 1 cut(s) 1045
Bsp1407I TGTACA 2 cut(s) 282, 424
Bsp143I GATC 4 cut(s) 247, 391, 486, 1114
Bsp19I CCATGG 1 cut(s) 807
BspACI CCGC 5 cut(s) 98, 169, 334, 368, 917
BspANI GGCC 3 cut(s) 33, 986, 1060
BspCNI CTCAG 3 cut(s) 232, 865, 982
BspEI TCCGGA 1 cut(s) 1045
BspFNI CGCG 1 cut(s) 123
BspHI TCATGA 1 cut(s) 432
BspLI GGNNCC 5 cut(s) 138, 550, 617, 753, 762
BspMAI CTGCAG 1 cut(s) 715
BspT107I GGYRCC 1 cut(s) 136
BsrBI CCGCTC 1 cut(s) 171
BsrDI GCAATG 3 cut(s) 60, 159, 856
BsrFI RCCGGY 1 cut(s) 902
BsrGI TGTACA 2 cut(s) 282, 424
BsrI ACTGG 2 cut(s) 320, 762
BssAI RCCGGY 1 cut(s) 902
BssECI CCNNGG 5 cut(s) 461, 552, 619, 807, 1017
BssMI GATC 4 cut(s) 247, 391, 486, 1114
BssT1I CCWWGG 4 cut(s) 461, 552, 619, 807
Bst2UI CCWGG 2 cut(s) 134, 546
Bst4CI ACNGT 6 cut(s) 213, 422, 429, 769, 785, 841
BstAPI GCANNNNNTGC 1 cut(s) 914
BstAUI TGTACA 2 cut(s) 282, 424
BstC8I GCNNGC 5 cut(s) 121, 166, 334, 409, 1014
BstDEI CTNAG 4 cut(s) 219, 654, 873, 969
BstDSI CCRYGG 1 cut(s) 807
BstF5I GGATG 3 cut(s) 98, 803, 1099
BstFNI CGCG 1 cut(s) 123
BstHHI GCGC 2 cut(s) 125, 610
BstKTI GATC 4 cut(s) 250, 394, 489, 1117
BstMBI GATC 4 cut(s) 247, 391, 486, 1114
BstMWI GCNNNNNNNGC 7 cut(s) 104, 326, 605, 630, 824, 914, 1009
BstNI CCWGG 2 cut(s) 134, 546
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 2 cut(s) 132, 544
BstSFI CTRYAG 2 cut(s) 675, 711
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 7 cut(s) 4, 209, 240, 252, 316, 438, 960
BstV2I GAAGAC 1 cut(s) 296
BstXI CCANNNNNNTGG 2 cut(s) 133, 814
BsuRI GGCC 3 cut(s) 33, 986, 1060
BtgI CCRYGG 1 cut(s) 807
BtsCI GGATG 3 cut(s) 98, 803, 1099
BtsI GCAGTG 2 cut(s) 681, 732
BtsIMutI CAGTG 6 cut(s) 313, 681, 732, 755, 781, 846
Cac8I GCNNGC 5 cut(s) 121, 166, 334, 409, 1014
CciI TCATGA 1 cut(s) 432
CfoI GCGC 2 cut(s) 125, 610
Cfr10I RCCGGY 1 cut(s) 902
Cfr13I GGNCC 4 cut(s) 31, 616, 760, 1048
Csp6I GTAC 6 cut(s) 154, 283, 425, 628, 837, 944
CspAI ACCGGT 1 cut(s) 902
CviAII CATG 4 cut(s) 267, 286, 433, 808
CviQI GTAC 6 cut(s) 154, 283, 425, 628, 837, 944
DdeI CTNAG 4 cut(s) 219, 654, 873, 969
DpnI GATC 4 cut(s) 249, 393, 488, 1116
DpnII GATC 4 cut(s) 247, 391, 486, 1114
DrdI GACNNNNNNGTC 1 cut(s) 269
DseDI GACNNNNNNGTC 1 cut(s) 269
EaeI YGGCCR 1 cut(s) 1058
Ecl136II GAGCTC 1 cut(s) 1003
Eco130I CCWWGG 4 cut(s) 461, 552, 619, 807
Eco147I AGGCCT 1 cut(s) 986
Eco24I GRGCYC 1 cut(s) 1005
Eco47I GGWCC 3 cut(s) 616, 760, 1048
Eco53kI GAGCTC 1 cut(s) 1003
Eco57I CTGAAG 1 cut(s) 969
EcoICRI GAGCTC 1 cut(s) 1003
EcoO109I RGGNCCY 1 cut(s) 616
EcoRII CCWGG 2 cut(s) 132, 544
EcoT14I CCWWGG 4 cut(s) 461, 552, 619, 807
EcoT38I GRGCYC 1 cut(s) 1005
ErhI CCWWGG 4 cut(s) 461, 552, 619, 807
FaeI CATG 4 cut(s) 270, 289, 436, 811
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FaqI GGGAC 1 cut(s) 629
FatI CATG 4 cut(s) 266, 285, 432, 807
FauI CCCGC 1 cut(s) 341
FauNDI CATATG 1 cut(s) 868
FbaI TGATCA 2 cut(s) 247, 391
Fnu4HI GCNGC 9 cut(s) 18, 169, 198, 241, 254, 330, 369, 452, 974
FokI GGATG 3 cut(s) 105, 790, 1106
FriOI GRGCYC 1 cut(s) 1005
Fsp4HI GCNGC 9 cut(s) 18, 169, 198, 241, 254, 330, 369, 452, 974
FspBI CTAG 4 cut(s) 108, 300, 462, 620
GlaI GCGC 2 cut(s) 124, 609
GluI GCNGC 9 cut(s) 18, 169, 198, 241, 254, 330, 369, 452, 974
HaeIII GGCC 3 cut(s) 33, 986, 1060
HapII CCGG 2 cut(s) 903, 1046
HhaI GCGC 2 cut(s) 125, 610
Hin1II CATG 4 cut(s) 270, 289, 436, 811
Hin6I GCGC 2 cut(s) 123, 608
HinP1I GCGC 2 cut(s) 123, 608
HindIII AAGCTT 1 cut(s) 405
HinfI GANTC 1 cut(s) 494
HpaII CCGG 2 cut(s) 903, 1046
HphI GGTGA 3 cut(s) 299, 395, 449
Hpy166II GTNNAC 3 cut(s) 216, 283, 425
Hpy188I TCNGA 4 cut(s) 61, 222, 396, 493
Hpy188III TCNNGA 6 cut(s) 178, 374, 433, 980, 998, 1046
Hpy8I GTNNAC 3 cut(s) 216, 283, 425
HpyAV CCTTC 2 cut(s) 320, 472
HpyCH4III ACNGT 6 cut(s) 213, 422, 429, 769, 785, 841
HpyCH4IV ACGT 1 cut(s) 76
HpyCH4V TGCA 8 cut(s) 20, 454, 633, 713, 737, 773, 849, 908
HpyF10VI GCNNNNNNNGC 7 cut(s) 104, 326, 605, 630, 824, 914, 1009
HpyF3I CTNAG 4 cut(s) 219, 654, 873, 969
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 4 cut(s) 270, 289, 436, 811
HspAI GCGC 2 cut(s) 123, 608
Kpn2I TCCGGA 1 cut(s) 1045
Ksp22I TGATCA 2 cut(s) 247, 391
Kzo9I GATC 4 cut(s) 247, 391, 486, 1114
LmnI GCTCC 1 cut(s) 176
Lsp1109I GCAGC 7 cut(s) 4, 209, 240, 252, 316, 438, 960
LweI GCATC 6 cut(s) 265, 463, 586, 746, 1032, 1084
MaeI CTAG 4 cut(s) 108, 300, 462, 620
MaeII ACGT 1 cut(s) 76
MaeIII GTNAC 2 cut(s) 679, 697
MalI GATC 4 cut(s) 249, 393, 488, 1116
MbiI CCGCTC 1 cut(s) 171
MboI GATC 4 cut(s) 247, 391, 486, 1114
MboII GAAGA 5 cut(s) 296, 352, 876, 962, 1114
MhlI GDGCHC 1 cut(s) 1005
MlsI TGGCCA 1 cut(s) 1060
MluCI AATT 9 cut(s) 142, 191, 473, 557, 741, 777, 893, 1031, 1082
MluNI TGGCCA 1 cut(s) 1060
MmeI TCCRAC 1 cut(s) 441
MnlI CCTC 6 cut(s) 236, 300, 803, 976, 987, 1012
Mox20I TGGCCA 1 cut(s) 1060
MroI TCCGGA 1 cut(s) 1045
MscI TGGCCA 1 cut(s) 1060
MslI CAYNNNNRTG 2 cut(s) 578, 806
Msp20I TGGCCA 1 cut(s) 1060
MspA1I CMGCKG 3 cut(s) 253, 368, 973
MspI CCGG 2 cut(s) 903, 1046
MspR9I CCNGG 2 cut(s) 134, 546
MvaI CCWGG 2 cut(s) 134, 546
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 7 cut(s) 104, 326, 605, 630, 824, 914, 1009
NcoI CCATGG 1 cut(s) 807
NdeI CATATG 1 cut(s) 868
NdeII GATC 4 cut(s) 247, 391, 486, 1114
NlaIII CATG 4 cut(s) 270, 289, 436, 811
NlaIV GGNNCC 5 cut(s) 138, 550, 617, 753, 762
NmeAIII GCCGAG 1 cut(s) 1042
NmuCI GTSAC 2 cut(s) 679, 697
NspI RCATGY 1 cut(s) 289
PagI TCATGA 1 cut(s) 432
PceI AGGCCT 1 cut(s) 986
PfeI GAWTC 1 cut(s) 494
PflMI CCANNNNNTGG 1 cut(s) 648
PfoI TCCNGGA 1 cut(s) 544
PinAI ACCGGT 1 cut(s) 902
PkrI GCNGC 9 cut(s) 19, 170, 199, 242, 255, 331, 370, 453, 975
PpuMI RGGWCCY 1 cut(s) 616
Psp124BI GAGCTC 1 cut(s) 1005
Psp5II RGGWCCY 1 cut(s) 616
Psp6I CCWGG 2 cut(s) 132, 544
PspGI CCWGG 2 cut(s) 132, 544
PspN4I GGNNCC 5 cut(s) 138, 550, 617, 753, 762
PspPI GGNCC 4 cut(s) 31, 616, 760, 1048
PspPPI RGGWCCY 1 cut(s) 616
PstI CTGCAG 1 cut(s) 715
PvuII CAGCTG 2 cut(s) 253, 973
RsaI GTAC 6 cut(s) 155, 284, 426, 629, 838, 945
RsaNI GTAC 6 cut(s) 154, 283, 425, 628, 837, 944
RseI CAYNNNNRTG 2 cut(s) 578, 806
SacI GAGCTC 1 cut(s) 1005
SatI GCNGC 9 cut(s) 18, 169, 198, 241, 254, 330, 369, 452, 974
Sau3AI GATC 4 cut(s) 247, 391, 486, 1114
Sau96I GGNCC 4 cut(s) 31, 616, 760, 1048
ScrFI CCNGG 2 cut(s) 134, 546
SduI GDGCHC 1 cut(s) 1005
SfaNI GCATC 6 cut(s) 265, 463, 586, 746, 1032, 1084
SfcI CTRYAG 2 cut(s) 675, 711
SinI GGWCC 3 cut(s) 616, 760, 1048
SmiMI CAYNNNNRTG 2 cut(s) 578, 806
SmlI CTYRAG 2 cut(s) 978, 1006
SmoI CTYRAG 2 cut(s) 978, 1006
SpeI ACTAGT 1 cut(s) 299
Sse9I AATT 9 cut(s) 142, 191, 473, 557, 741, 777, 893, 1031, 1082
SseBI AGGCCT 1 cut(s) 986
SsiI CCGC 5 cut(s) 98, 169, 334, 368, 917
SspMI CTAG 4 cut(s) 108, 300, 462, 620
SstI GAGCTC 1 cut(s) 1005
StuI AGGCCT 1 cut(s) 986
StyD4I CCNGG 2 cut(s) 132, 544
StyI CCWWGG 4 cut(s) 461, 552, 619, 807
TaaI ACNGT 6 cut(s) 213, 422, 429, 769, 785, 841
TaiI ACGT 1 cut(s) 79
TaqI TCGA 4 cut(s) 146, 177, 258, 273
TasI AATT 9 cut(s) 142, 191, 473, 557, 741, 777, 893, 1031, 1082
TatI WGTACW 2 cut(s) 282, 424
TauI GCSGC 2 cut(s) 171, 371
TfiI GAWTC 1 cut(s) 494
TscAI CASTG 6 cut(s) 320, 688, 739, 762, 788, 846
TseFI GTSAC 2 cut(s) 679, 697
TseI GCWGC 7 cut(s) 17, 197, 240, 253, 329, 451, 973
Tsp45I GTSAC 2 cut(s) 679, 697
TspDTI ATGAA 3 cut(s) 421, 515, 876
TspRI CASTG 6 cut(s) 320, 688, 739, 762, 788, 846
Van91I CCANNNNNTGG 1 cut(s) 648
VpaK11BI GGWCC 3 cut(s) 616, 760, 1048
XapI RAATTY 4 cut(s) 191, 557, 893, 1031
XceI RCATGY 1 cut(s) 289
XcmI CCANNNNNNNNNTGG 1 cut(s) 559
XmaJI CCTAGG 2 cut(s) 461, 619
XspI CTAG 4 cut(s) 108, 300, 462, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.