Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003907

Physical Location & Seq

Genomic Coordinates Reverse (-)

20896736 .. 20898680

Gene Structure 1945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGTCTGAGAACCCAAAAATACGATTCGGCATATTAGGATGTGCAGACATAGCTAGAAAGGTTGCTCGCGCCATTAACCTGGCACCCAACTCGAACCTGTACGCCATTGCCAGCCGCTCCATCGACAAAGCCCACAAATTCGCAGCCAACAATGGACTCTCCACTCAGACCCTCAAAATCTACGGCAGCTATGATCAGTTGCTCGACGACCCATGTGTCGATGCTGTGTACATGCCTCTGCCCACCAGTCTTCACCTCCGCTGGGTTCTCTTGACTGCCCACAACAAGAAGCACTTGCTCTTGGAAAAGCCTGCCGCTCTTGATGTGGGTGAGCTTGATCAGATACTCCATGCTTGCCAATCCAACGGTGTACAGTTCATGACTGCGAGTATGTGGCTGCATCACCCTAGGACTGCCAAGTTGAAGGACTTCATCTCTGATTCCAAGCTCTTTGGTCGAATCAACTATATTCATAGCTCATCGACGCTTCCAGGAACAAAGGAATTTTTGGAGAACAACATAAGAGTGAAACCAGACTTAGATGCTCTTGGTGCGCTTGGGGACTTGGGCTGGTACTGCATTGAAGCCATTTTGTGGGCTAAGGACTACCAACTACCTACTATAGTCACTGCTCTACCAGATGTCACCAAAAACTCTGCAGGGGTCATCTTGTCTTTCACTGCATCAATTCAATGGGAACCACAGGATCAAACTGTTGCAACAATTCACTGTTCTTTCCTCTCTCACACATCCATGGACTTGTCTATATCTGCCTCTAATGGTACCGTGCGTTGCAATGACTACATAATTCCATATGCGGAGAACTGTTCTTCATTTGAATTCACATCAGGTGCAAAATTTGCGGAACTCCACATTGGGTGGAGTGTAGTACCTGAAGAAGTTAGAGTGGTCTCTCAGCTGCCACAAGAGGCCTTGATGGTTCAAGAGCTCTCAAGGCTTGCCGAGGGCATCAGGGAATTTGGATATCCTCCGGACAAAAAATGGCCACAAATCAGCAGAAATACACAACTGGTATTGGATGCAGTGAAGAAATCCATTGATCTTGGTTATGAACCTGTTACGGTGTTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GFO_IDH_MocA

Protein Analysis

365

Amino Acids

40.4

Weight (kDa)

6.12

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GFO_IDH_MocA	PF01408	7 - 128	7.6e-18	Oxidoreductase family, NAD-binding Rossmann fold
GFO_IDH_MocA_C3	PF22725	147 - 263	7.1e-07	GFO/IDH/MocA C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09670
fragaria_vesca	FvH4_1g28600 FvH4_2g12650
malus_domestica	MD09G1265700.v1.1 MD09G1265900.v1.1 MD10G1042200.v1.1 MD17G1262300.v1.1
prunus_persica	Prupe.3G163700_v2.0.a1 Prupe.8G046300_v2.0.a1
pyrus_communis	pycom09g17920 pycom17g26220
rosa_chinensis	RchiOBHm_Chr3g0492491 RchiOBHm_Chr6g0273321
rosa_laevigata	RLG00000013623 RLG00000022763
rosa_multiflora	Rmu_sc0000239.1_g000005 Rmu_sc0000971.1_g000009 Rmu_sc0010088.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392240 Rroxscaffold_7G00195440
rosa_rugosa	Rorug03G0254000 Rorug03G0254200 Rorug03G0254300 Rorug06G0074100
rosa_samantha	Rh3AG304600 Rh3BG340500 Rh3CG337900 Rh3DG339700 Rh6AG189400 Rh6BG192600 Rh6CG192600 Rh6DG184100
rosa_wichuraiana	Rw3G026830 Rw6G016480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	215
Acc65I	GGTACC	1 cut(s)	782
AccB1I	GGYRCC	2 cut(s)	82, 782
AccB7I	CCANNNNNTGG	1 cut(s)	594
AccBSI	CCGCTC	2 cut(s)	117, 317
AccII	CGCG	1 cut(s)	69
AccIII	TCCGGA	1 cut(s)	991
AciI	CCGC	5 cut(s)	115, 259, 315, 818, 863
AclWI	GGATC	1 cut(s)	714
AcoI	YGGCCR	1 cut(s)	1004
AcsI	RAATTY	5 cut(s)	137, 503, 839, 857, 977
AcuI	CTGAAG	1 cut(s)	915
AfaI	GTAC	6 cut(s)	101, 230, 372, 575, 784, 891
AfiI	CCNNNNNNNGG	2 cut(s)	262, 594
AgsI	TTSAA	5 cut(s)	424, 584, 692, 839, 944
AjnI	CCWGG	2 cut(s)	78, 490
AjuI	GAANNNNNNNTTGG	2 cut(s)	858, 890
AluBI	AGCT	7 cut(s)	53, 189, 334, 448, 477, 919, 949
AluI	AGCT	7 cut(s)	53, 189, 334, 448, 477, 919, 949
Alw21I	GWGCWC	1 cut(s)	951
Alw26I	GTCTC	1 cut(s)	916
AlwI	GGATC	1 cut(s)	714
Aor13HI	TCCGGA	1 cut(s)	991
AoxI	GGCC	2 cut(s)	930, 1004
ApeKI	GCWGC	4 cut(s)	143, 186, 397, 919
ApoI	RAATTY	5 cut(s)	137, 503, 839, 857, 977
Asp700I	GAANNNNTTC	1 cut(s)	428
Asp718I	GGTACC	1 cut(s)	782
AspA2I	CCTAGG	1 cut(s)	407
AspLEI	GCGC	2 cut(s)	71, 556
AsuHPI	GGTGA	4 cut(s)	245, 341, 395, 637
AvrII	CCTAGG	1 cut(s)	407
BalI	TGGCCA	1 cut(s)	1006
BanI	GGYRCC	2 cut(s)	82, 782
BanII	GRGCYC	1 cut(s)	951
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	951
BbvI	GCAGC	4 cut(s)	155, 198, 384, 906
BccI	CCATC	2 cut(s)	128, 931
BceAI	ACGGC	1 cut(s)	199
BcgI	CGANNNNNNTGC	2 cut(s)	72, 106
BciT130I	CCWGG	2 cut(s)	80, 492
BclI	TGATCA	2 cut(s)	193, 337
BcoDI	GTCTC	1 cut(s)	916
BfaI	CTAG	2 cut(s)	54, 408
BfmI	CTRYAG	2 cut(s)	621, 657
BisI	GCNGC	6 cut(s)	115, 144, 187, 315, 398, 920
BlnI	CCTAGG	1 cut(s)	407
BlsI	GCNGC	6 cut(s)	116, 145, 188, 316, 399, 921
Bme1390I	CCNGG	2 cut(s)	80, 492
BmiI	GGNNCC	3 cut(s)	84, 699, 784
BmrFI	CCNGG	2 cut(s)	80, 492
BmsI	GCATC	6 cut(s)	211, 409, 532, 692, 978, 1030
BpiI	GAAGAC	1 cut(s)	242
Bpu10I	CCTNAGC	1 cut(s)	600
BpuEI	CTTGAG	1 cut(s)	937
BsaI	GGTCTC	1 cut(s)	916
BsaJI	CCNNGG	3 cut(s)	407, 753, 963
BsaWI	WCCGGW	1 cut(s)	991
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 594
Bse1I	ACTGG	2 cut(s)	246, 1035
Bse3DI	GCAATG	2 cut(s)	105, 802
BseAI	TCCGGA	1 cut(s)	991
BseBI	CCWGG	2 cut(s)	80, 492
BseDI	CCNNGG	3 cut(s)	407, 753, 963
BseGI	GGATG	3 cut(s)	44, 749, 1045
BseLI	CCNNNNNNNGG	2 cut(s)	262, 594
BseMI	GCAATG	2 cut(s)	105, 802
BseMII	CTCAG	2 cut(s)	179, 929
BseNI	ACTGG	2 cut(s)	246, 1035
BseXI	GCAGC	4 cut(s)	155, 198, 384, 906
BseYI	CCCAGC	1 cut(s)	261
BsgI	GTGCAG	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	2 cut(s)	932, 1006
BshNI	GGYRCC	2 cut(s)	82, 782
BsiHKAI	GWGCWC	1 cut(s)	951
BsiSI	CCGG	1 cut(s)	992
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	2 cut(s)	262, 594
BsmAI	GTCTC	1 cut(s)	916
BsmFI	GGGAC	1 cut(s)	575
BsnI	GGCC	2 cut(s)	932, 1006
Bso31I	GGTCTC	1 cut(s)	916
Bsp1286I	GDGCHC	1 cut(s)	951
Bsp13I	TCCGGA	1 cut(s)	991
Bsp1407I	TGTACA	2 cut(s)	228, 370
Bsp143I	GATC	4 cut(s)	193, 337, 706, 1060
Bsp19I	CCATGG	1 cut(s)	753
BspACI	CCGC	5 cut(s)	115, 259, 315, 818, 863
BspANI	GGCC	2 cut(s)	932, 1006
BspCNI	CTCAG	2 cut(s)	178, 928
BspEI	TCCGGA	1 cut(s)	991
BspFNI	CGCG	1 cut(s)	69
BspHI	TCATGA	1 cut(s)	378
BspLI	GGNNCC	3 cut(s)	84, 699, 784
BspMAI	CTGCAG	1 cut(s)	661
BspPI	GGATC	1 cut(s)	714
BspT107I	GGYRCC	2 cut(s)	82, 782
BspTNI	GGTCTC	1 cut(s)	916
BsrBI	CCGCTC	2 cut(s)	117, 317
BsrDI	GCAATG	2 cut(s)	105, 802
BsrGI	TGTACA	2 cut(s)	228, 370
BsrI	ACTGG	2 cut(s)	246, 1035
BssECI	CCNNGG	3 cut(s)	407, 753, 963
BssMI	GATC	4 cut(s)	193, 337, 706, 1060
BssT1I	CCWWGG	2 cut(s)	407, 753
Bst2UI	CCWGG	2 cut(s)	80, 492
Bst4CI	ACNGT	7 cut(s)	368, 375, 715, 731, 787, 827, 1084
BstAPI	GCANNNNNTGC	1 cut(s)	860
BstAUI	TGTACA	2 cut(s)	228, 370
BstC8I	GCNNGC	5 cut(s)	67, 112, 312, 355, 960
BstDEI	CTNAG	5 cut(s)	6, 165, 538, 600, 915
BstDSI	CCRYGG	1 cut(s)	753
BstF5I	GGATG	3 cut(s)	44, 749, 1045
BstFNI	CGCG	1 cut(s)	69
BstHHI	GCGC	2 cut(s)	71, 556
BstKTI	GATC	4 cut(s)	196, 340, 709, 1063
BstMAI	GTCTC	1 cut(s)	916
BstMBI	GATC	4 cut(s)	193, 337, 706, 1060
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 551, 576, 860, 955
BstNI	CCWGG	2 cut(s)	80, 492
BstNSI	RCATGY	1 cut(s)	235
BstSCI	CCNGG	2 cut(s)	78, 490
BstSFI	CTRYAG	2 cut(s)	621, 657
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	4 cut(s)	155, 198, 384, 906
BstV2I	GAAGAC	1 cut(s)	242
BstXI	CCANNNNNNTGG	1 cut(s)	79
BsuRI	GGCC	2 cut(s)	932, 1006
BtgI	CCRYGG	1 cut(s)	753
BtsCI	GGATG	3 cut(s)	44, 749, 1045
BtsI	GCAGTG	3 cut(s)	627, 678, 1050
BtsIMutI	CAGTG	4 cut(s)	627, 678, 727, 1050
Cac8I	GCNNGC	5 cut(s)	67, 112, 312, 355, 960
CciI	TCATGA	1 cut(s)	378
CfoI	GCGC	2 cut(s)	71, 556
CseI	GACGC	1 cut(s)	493
Csp6I	GTAC	6 cut(s)	100, 229, 371, 574, 783, 890
CviAII	CATG	5 cut(s)	213, 232, 350, 379, 754
CviQI	GTAC	6 cut(s)	100, 229, 371, 574, 783, 890
DdeI	CTNAG	5 cut(s)	6, 165, 538, 600, 915
DpnI	GATC	4 cut(s)	195, 339, 708, 1062
DpnII	GATC	4 cut(s)	193, 337, 706, 1060
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
EaeI	YGGCCR	1 cut(s)	1004
Ecl136II	GAGCTC	1 cut(s)	949
Eco130I	CCWWGG	2 cut(s)	407, 753
Eco147I	AGGCCT	1 cut(s)	932
Eco24I	GRGCYC	1 cut(s)	951
Eco31I	GGTCTC	1 cut(s)	916
Eco32I	GATATC	1 cut(s)	986
Eco53kI	GAGCTC	1 cut(s)	949
Eco57I	CTGAAG	1 cut(s)	915
EcoICRI	GAGCTC	1 cut(s)	949
EcoRI	GAATTC	1 cut(s)	839
EcoRII	CCWGG	2 cut(s)	78, 490
EcoRV	GATATC	1 cut(s)	986
EcoT14I	CCWWGG	2 cut(s)	407, 753
EcoT38I	GRGCYC	1 cut(s)	951
ErhI	CCWWGG	2 cut(s)	407, 753
FaeI	CATG	5 cut(s)	216, 235, 353, 382, 757
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	5 cut(s)	212, 231, 349, 378, 753
FauNDI	CATATG	1 cut(s)	814
FbaI	TGATCA	2 cut(s)	193, 337
Fnu4HI	GCNGC	6 cut(s)	115, 144, 187, 315, 398, 920
FokI	GGATG	3 cut(s)	51, 736, 1052
FriOI	GRGCYC	1 cut(s)	951
Fsp4HI	GCNGC	6 cut(s)	115, 144, 187, 315, 398, 920
FspBI	CTAG	2 cut(s)	54, 408
GlaI	GCGC	2 cut(s)	70, 555
GluI	GCNGC	6 cut(s)	115, 144, 187, 315, 398, 920
GsaI	CCCAGC	1 cut(s)	265
HaeIII	GGCC	2 cut(s)	932, 1006
HapII	CCGG	1 cut(s)	992
HgaI	GACGC	1 cut(s)	493
HhaI	GCGC	2 cut(s)	71, 556
Hin1II	CATG	5 cut(s)	216, 235, 353, 382, 757
Hin6I	GCGC	2 cut(s)	69, 554
HinP1I	GCGC	2 cut(s)	69, 554
HinfI	GANTC	4 cut(s)	24, 156, 440, 459
HpaII	CCGG	1 cut(s)	992
HphI	GGTGA	4 cut(s)	245, 341, 395, 637
Hpy166II	GTNNAC	2 cut(s)	229, 371
Hpy188I	TCNGA	4 cut(s)	7, 168, 342, 439
Hpy188III	TCNNGA	5 cut(s)	271, 320, 379, 944, 992
Hpy8I	GTNNAC	2 cut(s)	229, 371
Hpy99I	CGWCG	2 cut(s)	209, 487
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	7 cut(s)	368, 375, 715, 731, 787, 827, 1084
HpyCH4V	TGCA	9 cut(s)	44, 400, 579, 659, 683, 719, 795, 854, 1043
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 551, 576, 860, 955
HpyF3I	CTNAG	5 cut(s)	6, 165, 538, 600, 915
Hsp92II	CATG	5 cut(s)	216, 235, 353, 382, 757
HspAI	GCGC	2 cut(s)	69, 554
Kpn2I	TCCGGA	1 cut(s)	991
KpnI	GGTACC	1 cut(s)	786
Ksp22I	TGATCA	2 cut(s)	193, 337
Kzo9I	GATC	4 cut(s)	193, 337, 706, 1060
LmnI	GCTCC	1 cut(s)	122
Lsp1109I	GCAGC	4 cut(s)	155, 198, 384, 906
LweI	GCATC	6 cut(s)	211, 409, 532, 692, 978, 1030
MaeI	CTAG	2 cut(s)	54, 408
MaeIII	GTNAC	3 cut(s)	625, 643, 1078
MalI	GATC	4 cut(s)	195, 339, 708, 1062
MbiI	CCGCTC	2 cut(s)	117, 317
MboI	GATC	4 cut(s)	193, 337, 706, 1060
MboII	GAAGA	4 cut(s)	242, 822, 908, 1060
MhlI	GDGCHC	1 cut(s)	951
MlsI	TGGCCA	1 cut(s)	1006
MluCI	AATT	8 cut(s)	137, 503, 687, 723, 807, 839, 857, 977
MluNI	TGGCCA	1 cut(s)	1006
MlyI	GAGTC	1 cut(s)	150
MmeI	TCCRAC	1 cut(s)	387
MnlI	CCTC	8 cut(s)	182, 246, 266, 749, 784, 922, 958, 999
Mox20I	TGGCCA	1 cut(s)	1006
MroI	TCCGGA	1 cut(s)	991
MroXI	GAANNNNTTC	1 cut(s)	428
MscI	TGGCCA	1 cut(s)	1006
MseI	TTAA	1 cut(s)	75
MslI	CAYNNNNRTG	2 cut(s)	524, 752
Msp20I	TGGCCA	1 cut(s)	1006
MspA1I	CMGCKG	2 cut(s)	261, 919
MspI	CCGG	1 cut(s)	992
MspR9I	CCNGG	2 cut(s)	80, 492
MvaI	CCWGG	2 cut(s)	80, 492
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	5 cut(s)	50, 551, 576, 860, 955
NcoI	CCATGG	1 cut(s)	753
NdeI	CATATG	1 cut(s)	814
NdeII	GATC	4 cut(s)	193, 337, 706, 1060
NlaIII	CATG	5 cut(s)	216, 235, 353, 382, 757
NlaIV	GGNNCC	3 cut(s)	84, 699, 784
NmeAIII	GCCGAG	1 cut(s)	988
NmuCI	GTSAC	2 cut(s)	625, 643
NspI	RCATGY	1 cut(s)	235
PagI	TCATGA	1 cut(s)	378
PceI	AGGCCT	1 cut(s)	932
PdmI	GAANNNNTTC	1 cut(s)	428
PfeI	GAWTC	3 cut(s)	24, 440, 459
PflMI	CCANNNNNTGG	1 cut(s)	594
PfoI	TCCNGGA	1 cut(s)	490
PkrI	GCNGC	6 cut(s)	116, 145, 188, 316, 399, 921
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
Psp124BI	GAGCTC	1 cut(s)	951
Psp6I	CCWGG	2 cut(s)	78, 490
PspFI	CCCAGC	1 cut(s)	261
PspGI	CCWGG	2 cut(s)	78, 490
PspN4I	GGNNCC	3 cut(s)	84, 699, 784
PstI	CTGCAG	1 cut(s)	661
PvuII	CAGCTG	1 cut(s)	919
RsaI	GTAC	6 cut(s)	101, 230, 372, 575, 784, 891
RsaNI	GTAC	6 cut(s)	100, 229, 371, 574, 783, 890
RseI	CAYNNNNRTG	2 cut(s)	524, 752
SacI	GAGCTC	1 cut(s)	951
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	6 cut(s)	115, 144, 187, 315, 398, 920
Sau3AI	GATC	4 cut(s)	193, 337, 706, 1060
SchI	GAGTC	1 cut(s)	150
ScrFI	CCNGG	2 cut(s)	80, 492
SduI	GDGCHC	1 cut(s)	951
SfaNI	GCATC	6 cut(s)	211, 409, 532, 692, 978, 1030
SfcI	CTRYAG	2 cut(s)	621, 657
SmiMI	CAYNNNNRTG	2 cut(s)	524, 752
SmlI	CTYRAG	1 cut(s)	952
SmoI	CTYRAG	1 cut(s)	952
Sse9I	AATT	8 cut(s)	137, 503, 687, 723, 807, 839, 857, 977
SseBI	AGGCCT	1 cut(s)	932
SsiI	CCGC	5 cut(s)	115, 259, 315, 818, 863
SspMI	CTAG	2 cut(s)	54, 408
SstI	GAGCTC	1 cut(s)	951
StuI	AGGCCT	1 cut(s)	932
StyD4I	CCNGG	2 cut(s)	78, 490
StyI	CCWWGG	2 cut(s)	407, 753
TaaI	ACNGT	7 cut(s)	368, 375, 715, 731, 787, 827, 1084
TaqI	TCGA	6 cut(s)	92, 123, 204, 219, 457, 482
TasI	AATT	8 cut(s)	137, 503, 687, 723, 807, 839, 857, 977
TatI	WGTACW	2 cut(s)	228, 370
TauI	GCSGC	2 cut(s)	117, 317
TfiI	GAWTC	3 cut(s)	24, 440, 459
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	4 cut(s)	634, 685, 734, 1050
TseFI	GTSAC	2 cut(s)	625, 643
TseI	GCWGC	4 cut(s)	143, 186, 397, 919
Tsp45I	GTSAC	2 cut(s)	625, 643
TspDTI	ATGAA	5 cut(s)	367, 421, 461, 822, 1086
TspRI	CASTG	4 cut(s)	634, 685, 734, 1050
Van91I	CCANNNNNTGG	1 cut(s)	594
XapI	RAATTY	5 cut(s)	137, 503, 839, 857, 977
XceI	RCATGY	1 cut(s)	235
XmaJI	CCTAGG	1 cut(s)	407
XmnI	GAANNNNTTC	1 cut(s)	428
XspI	CTAG	2 cut(s)	54, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.