Rorug03G0254000

Oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0003907
Physical Location & Seq
Reverse (-)
24079327 .. 24082803
3477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0254000.1

Sequence Viewer

Length: 1479 bp
ATGAAGAAGACGAAGCAACAAAGTGAAACGCCGGATGCAATATCAAGGTCTGATGTTTGGCTTCGTGCGTATGAAGCAAAGCAAAAGCAAGGGTCAACTGAGGAAGCTGTGGATTCAGAAATAGTGAAACAAGTGAAAAAGTACAAGGAAGAAGAAGAAACAGTTTCTGGACCATCTTCTATAAAGAATGATGCTGTTGTGAAAGTACTTGGTCCAGATCCACGAGGACGAGTAAGAGGGTATGGGTTCGGTGCGCTAACTTCAAAAGTTGATGCTCAATCACATGTAAGTAACAAGGTCACAATGTTAGAGAATGCTCTTGCTGCTCAAACACAAGTGGTAGACAAATTGCAAGAGATGATGAGAGGCCTTTGTGCTCGGCTAGACCAAGGAGGAATTAACAATGAACACACTAGTGCACAACAATCTGCTACTGAGATTGGAAATAGAAAACGTAAAGAAAATCCATGTGTTAGAAGTACTGGTAGTGATATAGCACAGAGCAAACAGAAAGATGCAAGTGTTAGAAGTTCTTATAATGAGATAGAAAATGGCAGCCCAATTCAGCAAAGTTTTAATGGAAAGAAGCAACTTTCTAGACAAGATAACCCAAAAAAGGTCCAGAAGACAGATTTGGGGAAACAAGTGCAGTTGTTAAGTTGGTTTGCTAAAGAAGTAGTTGTTGCAAGTGCTAGTATTATATCAAAAGATCCACAAGTTGAGGTGCATCATGTGCCTCTTGGCCATGATTGTTGGAAAGTATCGGTGCATGAAGTTTTTCATGATATAGCCTTGTATCGCTCCCCAAGTAAAATTGGCATCATGCATGGTATGAAGATGTTTAAAAGGCCATGGATCACTATAGATTTATCTTTTGCAATTAACAAAGACGATTCTAATCTAAGATGCTCTCTGGTCTTTTCCATGGAGCTCCGCCAACTCGAGGAGCTGGATGCCCAGCGTCAGGTGAATGAAGTCCGAGAAGAGACTATCAGTTTCACCCAACAAGGAGCTTGGAGGCCCAACATCAGATCTTCCGTTGACTCGTTGATGCCGAAATTGGCACCAACACACAGCAAAGTCGATAAGTTCTTCTGCAGTATCCGAAGCGTTAAAGTTCTTGTTATAAAACAACACACTGCTCAGAAGCTGATGGAGGAAGGCTTCATGCATTTTCTGGAATCATTCTATAATGTTCGGAATTTGGGTGTTCGTATTAGCTCAGATTTGGATGACAAGATGATTCCATCAATAGTCTCTCTTCTCAGAGCAGTGCCTAATTTCACTTTGGATATAAGATCGCCTCGCGATAAAGTCTTTTTTTCCGGTGGACCTGTTGAATCATCATTCGATAGTGGTCATTGGCAACTGCAAGAACTCGACTTCATCAATCGAATTAAGGAGGTAACAATAGAGATTACTGATGGGTCTAATGGAATTGAGTTTGCAAAGTATATATGTGCTGGAGAATTCTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GFO_IDH_MocA

Protein Analysis

492

Amino Acids

55.35

Weight (kDa)

8.67

Isoelectric Point (pI)

49.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 7 - 84 5.5e-06 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 537, 1127
AccB1I GGYRCC 1 cut(s) 1063
AccI GTMKAC 1 cut(s) 342
AccII CGCG 1 cut(s) 1308
AciI CCGC 1 cut(s) 934
AclWI GGATC 3 cut(s) 212, 704, 863
AcoI YGGCCR 1 cut(s) 742
AcsI RAATTY 2 cut(s) 1201, 1469
AfaI GTAC 3 cut(s) 143, 207, 481
AfiI CCNNNNNNNGG 3 cut(s) 616, 943, 964
AflIII ACRYGT 1 cut(s) 283
AgsI TTSAA 2 cut(s) 264, 1340
AhlI ACTAGT 1 cut(s) 413
AjuI GAANNNNNNNTTGG 2 cut(s) 617, 649
AleI CACNNNNGTG 1 cut(s) 414
AluBI AGCT 6 cut(s) 107, 931, 949, 1013, 1150, 1221
AluI AGCT 6 cut(s) 107, 931, 949, 1013, 1150, 1221
Alw21I GWGCWC 3 cut(s) 379, 421, 933
Alw26I GTCTC 2 cut(s) 980, 1261
Alw44I GTGCAC 1 cut(s) 417
AlwI GGATC 3 cut(s) 212, 704, 863
AlwNI CAGNNNCTG 2 cut(s) 167, 1150
Ama87I CYCGRG 1 cut(s) 941
AoxI GGCC 4 cut(s) 367, 742, 848, 1019
ApaLI GTGCAC 1 cut(s) 417
ApeKI GCWGC 2 cut(s) 323, 555
ApoI RAATTY 2 cut(s) 1201, 1469
Asp700I GAANNNNTTC 1 cut(s) 777
AspLEI GCGC 1 cut(s) 256
AspS9I GGNCC 5 cut(s) 170, 212, 619, 1020, 1331
AsuHPI GGTGA 2 cut(s) 979, 991
AvaI CYCGRG 1 cut(s) 941
AvaII GGWCC 4 cut(s) 170, 212, 619, 1331
BaeGI GKGCMC 1 cut(s) 421
BalI TGGCCA 1 cut(s) 744
BanI GGYRCC 1 cut(s) 1063
BanII GRGCYC 1 cut(s) 933
BauI CACGAG 1 cut(s) 222
BbsI GAAGAC 2 cut(s) 14, 632
Bbv12I GWGCWC 3 cut(s) 379, 421, 933
BbvI GCAGC 2 cut(s) 310, 567
BccI CCATC 4 cut(s) 181, 1147, 1255, 1418
BciVI GTATCC 1 cut(s) 1112
BcoDI GTCTC 2 cut(s) 980, 1261
BcuI ACTAGT 1 cut(s) 413
BfaI CTAG 5 cut(s) 383, 414, 597, 693, 1477
BfmI CTRYAG 2 cut(s) 861, 1096
BfuI GTATCC 1 cut(s) 1112
BglII AGATCT 1 cut(s) 1031
BisI GCNGC 2 cut(s) 324, 556
BlsI GCNGC 2 cut(s) 325, 557
BmcAI AGTACT 2 cut(s) 207, 481
Bme18I GGWCC 4 cut(s) 170, 212, 619, 1331
BmeT110I CYCGRG 1 cut(s) 941
BmgT120I GGNCC 5 cut(s) 170, 212, 619, 1020, 1331
BmiI GGNNCC 1 cut(s) 1065
BmsI GCATC 9 cut(s) 25, 181, 262, 505, 736, 828, 896, 943, 1041
BpiI GAAGAC 2 cut(s) 14, 632
BsaBI GATNNNNATC 1 cut(s) 897
BsaJI CCNNGG 3 cut(s) 388, 851, 924
BsaWI WCCGGW 1 cut(s) 1325
Bsc4I CCNNNNNNNGG 3 cut(s) 616, 943, 964
Bse1I ACTGG 1 cut(s) 487
Bse8I GATNNNNATC 1 cut(s) 897
BseDI CCNNGG 3 cut(s) 388, 851, 924
BseGI GGATG 3 cut(s) 40, 958, 1237
BseJI GATNNNNATC 1 cut(s) 897
BseLI CCNNNNNNNGG 3 cut(s) 616, 943, 964
BseMII CTCAG 5 cut(s) 90, 426, 1157, 1236, 1279
BseNI ACTGG 1 cut(s) 487
BseRI GAGGAG 1 cut(s) 959
BseSI GKGCMC 1 cut(s) 421
BseXI GCAGC 2 cut(s) 310, 567
BseYI CCCAGC 1 cut(s) 957
BsgI GTGCAG 1 cut(s) 668
Bsh1236I CGCG 1 cut(s) 1308
BshFI GGCC 4 cut(s) 369, 744, 850, 1021
BshNI GGYRCC 1 cut(s) 1063
BsiHKAI GWGCWC 3 cut(s) 379, 421, 933
BsiHKCI CYCGRG 1 cut(s) 941
BsiSI CCGG 2 cut(s) 32, 1326
BslI CCNNNNNNNGG 3 cut(s) 616, 943, 964
BsmAI GTCTC 2 cut(s) 980, 1261
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 4 cut(s) 369, 744, 850, 1021
BsoBI CYCGRG 1 cut(s) 941
Bsp1286I GDGCHC 3 cut(s) 379, 421, 933
Bsp143I GATC 5 cut(s) 217, 709, 855, 1031, 1298
Bsp19I CCATGG 2 cut(s) 851, 924
Bsp68I TCGCGA 1 cut(s) 1308
BspACI CCGC 1 cut(s) 934
BspANI GGCC 4 cut(s) 369, 744, 850, 1021
BspCNI CTCAG 5 cut(s) 91, 427, 1156, 1235, 1278
BspFNI CGCG 1 cut(s) 1308
BspHI TCATGA 1 cut(s) 781
BspLI GGNNCC 1 cut(s) 1065
BspMAI CTGCAG 1 cut(s) 1100
BspPI GGATC 3 cut(s) 212, 704, 863
BspT107I GGYRCC 1 cut(s) 1063
BsrI ACTGG 1 cut(s) 487
BssECI CCNNGG 3 cut(s) 388, 851, 924
BssMI GATC 5 cut(s) 217, 709, 855, 1031, 1298
BssSI CACGAG 1 cut(s) 222
BssT1I CCWWGG 3 cut(s) 388, 851, 924
Bst2BI CACGAG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 163
Bst6I CTCTTC 2 cut(s) 978, 1266
BstAPI GCANNNNNTGC 1 cut(s) 733
BstDEI CTNAG 6 cut(s) 99, 435, 902, 1143, 1222, 1265
BstDSI CCRYGG 2 cut(s) 851, 924
BstF5I GGATG 3 cut(s) 40, 958, 1237
BstFNI CGCG 1 cut(s) 1308
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 5 cut(s) 220, 712, 858, 1034, 1301
BstMAI GTCTC 2 cut(s) 980, 1261
BstMBI GATC 5 cut(s) 217, 709, 855, 1031, 1298
BstMWI GCNNNNNNNGC 3 cut(s) 74, 323, 733
BstNSI RCATGY 1 cut(s) 287
BstSFI CTRYAG 2 cut(s) 861, 1096
BstSLI GKGCMC 1 cut(s) 421
BstUI CGCG 1 cut(s) 1308
BstV1I GCAGC 2 cut(s) 310, 567
BstV2I GAAGAC 2 cut(s) 14, 632
BstX2I RGATCY 3 cut(s) 217, 709, 1031
BstYI RGATCY 3 cut(s) 217, 709, 1031
BsuI GTATCC 1 cut(s) 1112
BsuRI GGCC 4 cut(s) 369, 744, 850, 1021
BtgI CCRYGG 2 cut(s) 851, 924
BtsCI GGATG 3 cut(s) 40, 958, 1237
BtsI GCAGTG 2 cut(s) 1137, 1278
BtsIMutI CAGTG 2 cut(s) 1137, 1278
BtuMI TCGCGA 1 cut(s) 1308
CaiI CAGNNNCTG 2 cut(s) 167, 1150
CciI TCATGA 1 cut(s) 781
CfoI GCGC 1 cut(s) 256
Cfr13I GGNCC 5 cut(s) 170, 212, 619, 1020, 1331
CseI GACGC 1 cut(s) 950
Csp6I GTAC 3 cut(s) 142, 206, 480
CviQI GTAC 3 cut(s) 142, 206, 480
DdeI CTNAG 6 cut(s) 99, 435, 902, 1143, 1222, 1265
DpnI GATC 5 cut(s) 219, 711, 857, 1033, 1300
DpnII GATC 5 cut(s) 217, 709, 855, 1031, 1298
DraI TTTAAA 1 cut(s) 844
EaeI YGGCCR 1 cut(s) 742
Eam1104I CTCTTC 2 cut(s) 978, 1266
EarI CTCTTC 2 cut(s) 978, 1266
EciI GGCGGA 1 cut(s) 923
Ecl136II GAGCTC 1 cut(s) 931
Eco130I CCWWGG 3 cut(s) 388, 851, 924
Eco147I AGGCCT 1 cut(s) 369
Eco24I GRGCYC 1 cut(s) 933
Eco47I GGWCC 4 cut(s) 170, 212, 619, 1331
Eco53kI GAGCTC 1 cut(s) 931
Eco88I CYCGRG 1 cut(s) 941
EcoICRI GAGCTC 1 cut(s) 931
EcoRI GAATTC 1 cut(s) 1469
EcoT14I CCWWGG 3 cut(s) 388, 851, 924
EcoT22I ATGCAT 2 cut(s) 828, 1173
EcoT38I GRGCYC 1 cut(s) 933
ErhI CCWWGG 3 cut(s) 388, 851, 924
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 2 cut(s) 324, 556
FokI GGATG 3 cut(s) 47, 965, 1244
FriOI GRGCYC 1 cut(s) 933
Fsp4HI GCNGC 2 cut(s) 324, 556
FspBI CTAG 5 cut(s) 383, 414, 597, 693, 1477
GlaI GCGC 1 cut(s) 255
GluI GCNGC 2 cut(s) 324, 556
GsaI CCCAGC 1 cut(s) 961
HaeIII GGCC 4 cut(s) 369, 744, 850, 1021
HapII CCGG 2 cut(s) 32, 1326
HgaI GACGC 1 cut(s) 950
HhaI GCGC 1 cut(s) 256
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HincII GTYRAC 2 cut(s) 96, 1042
HindII GTYRAC 2 cut(s) 96, 1042
HinfI GANTC 6 cut(s) 113, 893, 1043, 1181, 1243, 1340
HpaII CCGG 2 cut(s) 32, 1326
HphI GGTGA 2 cut(s) 979, 991
Hpy166II GTNNAC 5 cut(s) 96, 343, 419, 1042, 1331
Hpy188I TCNGA 9 cut(s) 52, 118, 980, 1031, 1106, 1146, 1200, 1225, 1268
Hpy188III TCNNGA 7 cut(s) 168, 215, 597, 622, 782, 1178, 1307
Hpy8I GTNNAC 5 cut(s) 96, 343, 419, 1042, 1331
HpyAV CCTTC 1 cut(s) 1154
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 454
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 323, 733
HpyF3I CTNAG 6 cut(s) 99, 435, 902, 1143, 1222, 1265
HpySE526I ACGT 1 cut(s) 454
HspAI GCGC 1 cut(s) 254
Kzo9I GATC 5 cut(s) 217, 709, 855, 1031, 1298
LmnI GCTCC 5 cut(s) 806, 928, 936, 946, 1010
Lsp1109I GCAGC 2 cut(s) 310, 567
LweI GCATC 9 cut(s) 25, 181, 262, 505, 736, 828, 896, 943, 1041
MaeI CTAG 5 cut(s) 383, 414, 597, 693, 1477
MaeII ACGT 1 cut(s) 454
MaeIII GTNAC 3 cut(s) 290, 298, 1405
MalI GATC 5 cut(s) 219, 711, 857, 1033, 1300
MboI GATC 5 cut(s) 217, 709, 855, 1031, 1298
MflI RGATCY 3 cut(s) 217, 709, 1031
MhlI GDGCHC 3 cut(s) 379, 421, 933
MlsI TGGCCA 1 cut(s) 744
MluNI TGGCCA 1 cut(s) 744
MlyI GAGTC 1 cut(s) 1037
MmeI TCCRAC 1 cut(s) 734
Mox20I TGGCCA 1 cut(s) 744
Mph1103I ATGCAT 2 cut(s) 828, 1173
MroXI GAANNNNTTC 1 cut(s) 777
MscI TGGCCA 1 cut(s) 744
MseI TTAA 7 cut(s) 399, 576, 656, 843, 882, 1113, 1398
MslI CAYNNNNRTG 1 cut(s) 414
Msp20I TGGCCA 1 cut(s) 744
MspI CCGG 2 cut(s) 32, 1326
Mva1269I GAATGC 1 cut(s) 319
MvnI CGCG 1 cut(s) 1308
MwoI GCNNNNNNNGC 3 cut(s) 74, 323, 733
NcoI CCATGG 2 cut(s) 851, 924
NdeII GATC 5 cut(s) 217, 709, 855, 1031, 1298
NlaIV GGNNCC 1 cut(s) 1065
NmeAIII GCCGAG 1 cut(s) 358
NmuCI GTSAC 1 cut(s) 298
NruI TCGCGA 1 cut(s) 1308
NsiI ATGCAT 2 cut(s) 828, 1173
NspI RCATGY 1 cut(s) 287
OliI CACNNNNGTG 1 cut(s) 414
PaeR7I CTCGAG 1 cut(s) 941
PagI TCATGA 1 cut(s) 781
PceI AGGCCT 1 cut(s) 369
PciI ACATGT 1 cut(s) 283
PcsI WCGNNNNNNNCGW 1 cut(s) 1052
PctI GAATGC 1 cut(s) 319
PdmI GAANNNNTTC 1 cut(s) 777
PfeI GAWTC 5 cut(s) 113, 893, 1181, 1243, 1340
PkrI GCNGC 2 cut(s) 325, 557
PleI GAGTC 1 cut(s) 1037
PpsI GAGTC 1 cut(s) 1037
PscI ACATGT 1 cut(s) 283
PsiI TTATAA 2 cut(s) 537, 1127
Psp124BI GAGCTC 1 cut(s) 933
PspFI CCCAGC 1 cut(s) 957
PspN4I GGNNCC 1 cut(s) 1065
PspPI GGNCC 5 cut(s) 170, 212, 619, 1020, 1331
PspXI VCTCGAGB 1 cut(s) 941
PstI CTGCAG 1 cut(s) 1100
PstNI CAGNNNCTG 2 cut(s) 167, 1150
PsuI RGATCY 3 cut(s) 217, 709, 1031
RruI TCGCGA 1 cut(s) 1308
RsaI GTAC 3 cut(s) 143, 207, 481
RsaNI GTAC 3 cut(s) 142, 206, 480
RseI CAYNNNNRTG 1 cut(s) 414
SacI GAGCTC 1 cut(s) 933
SaqAI TTAA 7 cut(s) 399, 576, 656, 843, 882, 1113, 1398
SatI GCNGC 2 cut(s) 324, 556
Sau3AI GATC 5 cut(s) 217, 709, 855, 1031, 1298
Sau96I GGNCC 5 cut(s) 170, 212, 619, 1020, 1331
ScaI AGTACT 2 cut(s) 207, 481
SchI GAGTC 1 cut(s) 1037
SduI GDGCHC 3 cut(s) 379, 421, 933
SfaNI GCATC 9 cut(s) 25, 181, 262, 505, 736, 828, 896, 943, 1041
SfcI CTRYAG 2 cut(s) 861, 1096
Sfr274I CTCGAG 1 cut(s) 941
SinI GGWCC 4 cut(s) 170, 212, 619, 1331
SlaI CTCGAG 1 cut(s) 941
SmiMI CAYNNNNRTG 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 941
SmoI CTYRAG 1 cut(s) 941
SpeI ACTAGT 1 cut(s) 413
SseBI AGGCCT 1 cut(s) 369
SsiI CCGC 1 cut(s) 934
SspMI CTAG 5 cut(s) 383, 414, 597, 693, 1477
SstI GAGCTC 1 cut(s) 933
StuI AGGCCT 1 cut(s) 369
StyI CCWWGG 3 cut(s) 388, 851, 924
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 1 cut(s) 457
TaqI TCGA 5 cut(s) 942, 1083, 1350, 1380, 1393
TatI WGTACW 3 cut(s) 141, 205, 479
TfiI GAWTC 5 cut(s) 113, 893, 1181, 1243, 1340
Tru1I TTAA 7 cut(s) 399, 576, 656, 843, 882, 1113, 1398
Tru9I TTAA 7 cut(s) 399, 576, 656, 843, 882, 1113, 1398
TscAI CASTG 2 cut(s) 1144, 1278
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 2 cut(s) 323, 555
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 9 cut(s) 17, 87, 420, 770, 786, 848, 987, 1156, 1375
TspGWI ACGGA 1 cut(s) 1027
TspRI CASTG 2 cut(s) 1144, 1278
VneI GTGCAC 1 cut(s) 417
VpaK11BI GGWCC 4 cut(s) 170, 212, 619, 1331
XapI RAATTY 2 cut(s) 1201, 1469
XbaI TCTAGA 1 cut(s) 596
XceI RCATGY 1 cut(s) 287
XhoI CTCGAG 1 cut(s) 941
XmiI GTMKAC 1 cut(s) 342
XmnI GAANNNNTTC 1 cut(s) 777
XspI CTAG 5 cut(s) 383, 414, 597, 693, 1477
ZrmI AGTACT 2 cut(s) 207, 481
Zsp2I ATGCAT 2 cut(s) 828, 1173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.