AT4G11175

Translation initiation factor IF-1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012929
Physical Location & Seq
Forward (+)
6818058 .. 6819253
1196 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G11175.1

Sequence Viewer

Length: 426 bp
ATGCTTCAACTCTGCTCCACTTTCCGTCCTCAACTTCTTCTTCCTTGTCAATTCCGATTTACAAATGGCGTTTTGATTCCCCAAATAAACTATGTTGCAAGCAATTCAGTTGTGAATATCCGGCCAATGATACGATGCCAGAGAGCAAGCGGAGGAAGAGGAGGAGCTAATAGAAGCAAACCTGCTAAGCCGCAAGTTAAAGAAGGAAGCAACAAAACAGTAATCGAAGGTTTAGTAACCGAATCGCTACCTAATGGAATGTTTCGAGTCGATTTGGAGAATGGTGACAACATTCTTGGTTATATTTGTGGTAAGATTAGGAAGAATTTCATTCGGATACTCCCCGGTGATAAAGTGAAAGTCGAAATGAGTGTTTATGATTCTACTAAAGGTCGTATCATTTTCAGAATGAGTAGTAGAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043021 GO:0043022 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044877
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
eIF-1a

Protein Analysis

141

Amino Acids

15.73

Weight (kDa)

10.16

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF-1a PF01176 75 - 136 4.2e-23 Translation initiation factor 1A / IF-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11175
fragaria_vesca FvH4_3g20270
malus_domestica MD11G1244000.v1.1
prunus_persica Prupe.4G182300_v2.0.a1 Prupe.4G182400_v2.0.a1
pyrus_communis pycom03g17460 pycom11g21650
rosa_chinensis RchiOBHm_Chr5g0034161 RchiOBHm_CPg0501881
rosa_laevigata RLG00000033528
rosa_multiflora Rmu_ssc0000128.1_g000028
rosa_roxburghii Rroxscaffold_1G00046120
rosa_rugosa Rorug05G0144300
rosa_samantha Rh5AG235700 Rh5BG236500 Rh5CG266500 Rh5DG243500
rosa_wichuraiana Rw5G021360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 190
AciI CCGC 2 cut(s) 150, 191
AcoI YGGCCR 1 cut(s) 122
AcsI RAATTY 1 cut(s) 325
AgsI TTSAA 1 cut(s) 8
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 414
AoxI GGCC 1 cut(s) 122
ApoI RAATTY 1 cut(s) 325
Asp700I GAANNNNTTC 1 cut(s) 326
AsuC2I CCSGG 1 cut(s) 345
AsuHPI GGTGA 2 cut(s) 296, 359
BciVI GTATCC 1 cut(s) 330
BcnI CCSGG 1 cut(s) 345
BcoDI GTCTC 1 cut(s) 414
BfuAI ACCTGC 1 cut(s) 190
BfuI GTATCC 1 cut(s) 330
BisI GCNGC 1 cut(s) 191
BlpI GCTNAGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 192
Bme1390I CCNGG 1 cut(s) 345
BmrFI CCNGG 1 cut(s) 345
BmsI GCATC 1 cut(s) 125
Bpu1102I GCTNAGC 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 345
BsaJI CCNNGG 1 cut(s) 343
BseDI CCNNGG 1 cut(s) 343
BseRI GAGGAG 2 cut(s) 174, 177
BshFI GGCC 1 cut(s) 124
BsiSI CCGG 2 cut(s) 121, 345
BsmAI GTCTC 1 cut(s) 414
BsnI GGCC 1 cut(s) 124
Bsp1720I GCTNAGC 1 cut(s) 186
BspACI CCGC 2 cut(s) 150, 191
BspANI GGCC 1 cut(s) 124
BspMI ACCTGC 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 343
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 1 cut(s) 151
BstC8I GCNNGC 2 cut(s) 100, 148
BstDEI CTNAG 1 cut(s) 186
BstMAI GTCTC 1 cut(s) 414
BstSCI CCNGG 1 cut(s) 343
BsuI GTATCC 1 cut(s) 330
BsuRI GGCC 1 cut(s) 124
BveI ACCTGC 1 cut(s) 190
Cac8I GCNNGC 2 cut(s) 100, 148
CviJI RGCY 3 cut(s) 124, 167, 190
CviKI_1 RGCY 3 cut(s) 124, 167, 190
DdeI CTNAG 1 cut(s) 186
EaeI YGGCCR 1 cut(s) 122
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
FaiI YATR 3 cut(s) 93, 303, 378
Fnu4HI GCNGC 1 cut(s) 191
Fsp4HI GCNGC 1 cut(s) 191
GluI GCNGC 1 cut(s) 191
HaeIII GGCC 1 cut(s) 124
HapII CCGG 2 cut(s) 121, 345
HinfI GANTC 4 cut(s) 76, 242, 267, 380
HpaII CCGG 2 cut(s) 121, 345
HphI GGTGA 2 cut(s) 296, 359
Hpy188I TCNGA 3 cut(s) 56, 336, 407
HpyAV CCTTC 2 cut(s) 197, 221
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4V TGCA 1 cut(s) 98
HpyF3I CTNAG 1 cut(s) 186
LmnI GCTCC 2 cut(s) 20, 164
LpnPI CCDG 4 cut(s) 134, 152, 195, 358
LweI GCATC 1 cut(s) 125
MaeIII GTNAC 2 cut(s) 235, 284
MboII GAAGA 4 cut(s) 29, 32, 168, 334
MluCI AATT 3 cut(s) 50, 103, 325
MlyI GAGTC 1 cut(s) 276
MnlI CCTC 4 cut(s) 39, 146, 152, 155
MroXI GAANNNNTTC 1 cut(s) 326
MseI TTAA 1 cut(s) 198
MspI CCGG 2 cut(s) 121, 345
MspR9I CCNGG 1 cut(s) 345
NciI CCSGG 1 cut(s) 345
NmuCI GTSAC 1 cut(s) 284
PdmI GAANNNNTTC 1 cut(s) 326
PfeI GAWTC 3 cut(s) 76, 242, 380
PkrI GCNGC 1 cut(s) 192
PleI GAGTC 1 cut(s) 275
PpsI GAGTC 1 cut(s) 275
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 1 cut(s) 191
SchI GAGTC 1 cut(s) 276
ScrFI CCNGG 1 cut(s) 345
SetI ASST 5 cut(s) 169, 184, 232, 253, 394
SfaNI GCATC 1 cut(s) 125
Sse9I AATT 3 cut(s) 50, 103, 325
SsiI CCGC 2 cut(s) 150, 191
StyD4I CCNGG 1 cut(s) 343
TaaI ACNGT 1 cut(s) 220
TaqI TCGA 4 cut(s) 225, 265, 270, 363
TasI AATT 3 cut(s) 50, 103, 325
TauI GCSGC 1 cut(s) 193
TfiI GAWTC 3 cut(s) 76, 242, 380
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TseFI GTSAC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 1 cut(s) 319
TspGWI ACGGA 1 cut(s) 14
XapI RAATTY 1 cut(s) 325
XmnI GAANNNNTTC 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.