Rh5BG236500

Translation initiation factor IF-1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0012929
Physical Location & Seq
Reverse (-)
28233337 .. 28235181
1845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG236500.1

Sequence Viewer

Length: 420 bp
ATGTTAACCTCAACATCATCATCATCATCATCCTCACTCCACCACCCAATCCTCCACACTCCCCTCCACCCCAAAACCCCAACCCTCACCCCACCTTCCCTCAAATTCCAACCAAACCCAAAACCTCAGCTCCACCTCGGAACCTCAATCCTCATCTCCAAACGTTGTCCCAACATCGTTGCCATGAGTAAATCCCCGAAAGTTGAGGAGCAGAAGTTCAGCGCAGAGGGTCTGGTCACTGAGTCACTCCCGAACGGCATGTTTCGAATCCGATTAGACAACGCGGACAACATTATAGGATACATTTCTGGGAAAATCCGAAAGAGTTTCATTAGGATTTTACCTGGGGATAGAGTCAAAGTTGAGGTTTGTTACTGGAATTATAATGGTTGCTGCAGTTTCAAATGTACAATGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043021 GO:0043022 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044877
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
eIF-1a

Protein Analysis

139

Amino Acids

15.49

Weight (kDa)

9.6

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF-1a PF01176 76 - 123 1.4e-14 Translation initiation factor 1A / IF-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11175
fragaria_vesca FvH4_3g20270
malus_domestica MD11G1244000.v1.1
prunus_persica Prupe.4G182300_v2.0.a1 Prupe.4G182400_v2.0.a1
pyrus_communis pycom03g17460 pycom11g21650
rosa_chinensis RchiOBHm_Chr5g0034161 RchiOBHm_CPg0501881
rosa_laevigata RLG00000033528
rosa_multiflora Rmu_ssc0000128.1_g000028
rosa_roxburghii Rroxscaffold_1G00046120
rosa_rugosa Rorug05G0144300
rosa_samantha Rh5AG235700 Rh5BG236500 Rh5CG266500 Rh5DG243500
rosa_wichuraiana Rw5G021360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 384
AccII CGCG 1 cut(s) 284
AciI CCGC 1 cut(s) 284
AclI AACGTT 1 cut(s) 163
AcsI RAATTY 1 cut(s) 104
AfaI GTAC 1 cut(s) 409
AgsI TTSAA 1 cut(s) 403
AjnI CCWGG 1 cut(s) 343
AloI GAACNNNNNNTCC 2 cut(s) 200, 232
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
ApeKI GCWGC 1 cut(s) 393
ApoI RAATTY 1 cut(s) 104
AspLEI GCGC 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 79
AsuII TTCGAA 1 cut(s) 265
BbvCI CCTCAGC 1 cut(s) 126
BbvI GCAGC 1 cut(s) 380
BceAI ACGGC 1 cut(s) 271
BciT130I CCWGG 1 cut(s) 345
BciVI GTATCC 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 394
BfuI GTATCC 1 cut(s) 293
BisI GCNGC 1 cut(s) 394
BlsI GCNGC 1 cut(s) 395
Bme1390I CCNGG 1 cut(s) 345
BmiI GGNNCC 1 cut(s) 142
BmrFI CCNGG 1 cut(s) 345
Bpu10I CCTNAGC 1 cut(s) 126
Bpu14I TTCGAA 1 cut(s) 265
BsaJI CCNNGG 2 cut(s) 136, 344
BsaXI ACNNNNNCTCC 4 cut(s) 114, 144, 200, 230
Bse1I ACTGG 1 cut(s) 380
BseBI CCWGG 1 cut(s) 345
BseDI CCNNGG 2 cut(s) 136, 344
BseGI GGATG 1 cut(s) 29
BseMII CTCAG 2 cut(s) 140, 231
BseNI ACTGG 1 cut(s) 380
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 380
Bsh1236I CGCG 1 cut(s) 284
BslFI GGGAC 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 153
Bsp119I TTCGAA 1 cut(s) 265
Bsp1407I TGTACA 1 cut(s) 407
BspACI CCGC 1 cut(s) 284
BspCNI CTCAG 2 cut(s) 139, 232
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 1 cut(s) 142
BspMAI CTGCAG 1 cut(s) 398
BspT104I TTCGAA 1 cut(s) 265
BsrGI TGTACA 1 cut(s) 407
BsrI ACTGG 1 cut(s) 380
BssECI CCNNGG 2 cut(s) 136, 344
Bst2UI CCWGG 1 cut(s) 345
BstAUI TGTACA 1 cut(s) 407
BstBI TTCGAA 1 cut(s) 265
BstDEI CTNAG 2 cut(s) 126, 240
BstF5I GGATG 1 cut(s) 29
BstFNI CGCG 1 cut(s) 284
BstHHI GCGC 1 cut(s) 224
BstNI CCWGG 1 cut(s) 345
BstNSI RCATGY 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 343
BstSFI CTRYAG 1 cut(s) 394
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 1 cut(s) 380
BsuI GTATCC 1 cut(s) 293
BtsCI GGATG 1 cut(s) 29
BtsIMutI CAGTG 1 cut(s) 237
CfoI GCGC 1 cut(s) 224
Csp6I GTAC 1 cut(s) 408
CviAII CATG 2 cut(s) 184, 259
CviJI RGCY 1 cut(s) 130
CviKI_1 RGCY 1 cut(s) 130
CviQI GTAC 1 cut(s) 408
DdeI CTNAG 2 cut(s) 126, 240
EcoRII CCWGG 1 cut(s) 343
FaeI CATG 2 cut(s) 187, 262
FaiI YATR 4 cut(s) 185, 260, 296, 384
FaqI GGGAC 1 cut(s) 153
FatI CATG 2 cut(s) 183, 258
Fnu4HI GCNGC 1 cut(s) 394
FokI GGATG 1 cut(s) 16
Fsp4HI GCNGC 1 cut(s) 394
GlaI GCGC 1 cut(s) 223
GluI GCNGC 1 cut(s) 394
HhaI GCGC 1 cut(s) 224
Hin1II CATG 2 cut(s) 187, 262
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 3 cut(s) 242, 267, 354
HpaI GTTAAC 1 cut(s) 6
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 3 cut(s) 140, 272, 320
Hpy188III TCNNGA 1 cut(s) 250
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 105
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 1 cut(s) 396
HpyF3I CTNAG 2 cut(s) 126, 240
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 2 cut(s) 187, 262
HspAI GCGC 1 cut(s) 222
KspAI GTTAAC 1 cut(s) 6
LmnI GCTCC 2 cut(s) 135, 208
LpnPI CCDG 5 cut(s) 218, 294, 330, 357, 361
Lsp1109I GCAGC 1 cut(s) 380
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 3 cut(s) 235, 243, 371
MluCI AATT 2 cut(s) 104, 379
MlyI GAGTC 2 cut(s) 251, 363
MmeI TCCRAC 1 cut(s) 133
MseI TTAA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 345
MvaI CCWGG 1 cut(s) 345
MvnI CGCG 1 cut(s) 284
NlaIII CATG 2 cut(s) 187, 262
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 2 cut(s) 235, 243
NspI RCATGY 1 cut(s) 262
NspV TTCGAA 1 cut(s) 265
PfeI GAWTC 1 cut(s) 267
PkrI GCNGC 1 cut(s) 395
PleI GAGTC 2 cut(s) 250, 362
PpsI GAGTC 2 cut(s) 250, 362
PsiI TTATAA 1 cut(s) 384
Psp1406I AACGTT 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 343
PspGI CCWGG 1 cut(s) 343
PspN4I GGNNCC 1 cut(s) 142
PstI CTGCAG 1 cut(s) 398
RsaI GTAC 1 cut(s) 409
RsaNI GTAC 1 cut(s) 408
SaqAI TTAA 1 cut(s) 5
SatI GCNGC 1 cut(s) 394
SchI GAGTC 2 cut(s) 251, 363
ScrFI CCNGG 1 cut(s) 345
SetI ASST 9 cut(s) 11, 97, 127, 132, 138, 146, 166, 346, 369
SfcI CTRYAG 1 cut(s) 394
SfuI TTCGAA 1 cut(s) 265
Sse9I AATT 2 cut(s) 104, 379
SsiI CCGC 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 343
TaiI ACGT 1 cut(s) 166
TaqI TCGA 1 cut(s) 265
TasI AATT 2 cut(s) 104, 379
TatI WGTACW 1 cut(s) 407
TfiI GAWTC 1 cut(s) 267
Tru1I TTAA 1 cut(s) 5
Tru9I TTAA 1 cut(s) 5
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 2 cut(s) 235, 243
TseI GCWGC 1 cut(s) 393
Tsp45I GTSAC 2 cut(s) 235, 243
TspDTI ATGAA 1 cut(s) 319
TspRI CASTG 1 cut(s) 244
XapI RAATTY 1 cut(s) 104
XceI RCATGY 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.