Rh5CG266500

Translation initiation factor IF-1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0012929
Physical Location & Seq
Reverse (-)
28658053 .. 28659881
1829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG266500.1

Sequence Viewer

Length: 366 bp
ATGTTAACCTCAACATCATCATCCTCACTCCACCACCCAATCCTCCACTCCAAAACCCCAACCCTCACCCCACCCTCCCTCAAATTCCAACCAAACCCAAAACCTCAGCTTCACCTCGGAACCTCAATCCTCGTCTCCAAACGTTGTCCCAACATCGTTGCCATGAGTAAATCCCCGAAAGTTGAGGAGCAGAAGTTCAGCGCAGAGGGTCTGGTCACGGAGTCGCTCCCGAACGGCATGTTTCGAATCCGATTAGACAACGCGGACAACATCATAGGATACATTTCTGGGAAAATCCGAAAGAGTTTCATTAGGATTTTGCCTGGGGATAGAGTCAAAGTTGAGGTTTGTTACTGGGAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043021 GO:0043022 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044877
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
eIF-1a

Protein Analysis

121

Amino Acids

13.5

Weight (kDa)

9.74

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF-1a PF01176 69 - 116 1.2e-14 Translation initiation factor 1A / IF-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11175
fragaria_vesca FvH4_3g20270
malus_domestica MD11G1244000.v1.1
prunus_persica Prupe.4G182300_v2.0.a1 Prupe.4G182400_v2.0.a1
pyrus_communis pycom03g17460 pycom11g21650
rosa_chinensis RchiOBHm_Chr5g0034161 RchiOBHm_CPg0501881
rosa_laevigata RLG00000033528
rosa_multiflora Rmu_ssc0000128.1_g000028
rosa_roxburghii Rroxscaffold_1G00046120
rosa_rugosa Rorug05G0144300
rosa_samantha Rh5AG235700 Rh5BG236500 Rh5CG266500 Rh5DG243500
rosa_wichuraiana Rw5G021360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 364
AccII CGCG 1 cut(s) 263
AciI CCGC 1 cut(s) 263
AclI AACGTT 1 cut(s) 142
AcsI RAATTY 1 cut(s) 83
AjnI CCWGG 1 cut(s) 322
AloI GAACNNNNNNTCC 2 cut(s) 179, 211
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 139
ApoI RAATTY 1 cut(s) 83
AspLEI GCGC 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 58, 104
AsuII TTCGAA 1 cut(s) 244
BbvCI CCTCAGC 1 cut(s) 105
BceAI ACGGC 1 cut(s) 250
BciT130I CCWGG 1 cut(s) 324
BciVI GTATCC 1 cut(s) 272
BcoDI GTCTC 1 cut(s) 139
BfuI GTATCC 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 324
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 324
BmrI ACTGGG 1 cut(s) 364
BmuI ACTGGG 1 cut(s) 364
Bpu10I CCTNAGC 1 cut(s) 105
Bpu14I TTCGAA 1 cut(s) 244
BsaJI CCNNGG 2 cut(s) 115, 323
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bse1I ACTGG 1 cut(s) 359
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 2 cut(s) 115, 323
BseGI GGATG 1 cut(s) 20
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 1 cut(s) 359
BseRI GAGGAG 1 cut(s) 200
Bsh1236I CGCG 1 cut(s) 263
BslFI GGGAC 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 139
BsmBI CGTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 132
Bsp119I TTCGAA 1 cut(s) 244
BspACI CCGC 1 cut(s) 263
BspCNI CTCAG 1 cut(s) 118
BspFNI CGCG 1 cut(s) 263
BspLI GGNNCC 1 cut(s) 121
BspT104I TTCGAA 1 cut(s) 244
BsrI ACTGG 1 cut(s) 359
BssECI CCNNGG 2 cut(s) 115, 323
Bst2UI CCWGG 1 cut(s) 324
BstBI TTCGAA 1 cut(s) 244
BstDEI CTNAG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 20
BstFNI CGCG 1 cut(s) 263
BstHHI GCGC 1 cut(s) 203
BstMAI GTCTC 1 cut(s) 139
BstNI CCWGG 1 cut(s) 324
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 322
BstUI CGCG 1 cut(s) 263
BsuI GTATCC 1 cut(s) 272
BtsCI GGATG 1 cut(s) 20
CfoI GCGC 1 cut(s) 203
CviAII CATG 2 cut(s) 163, 238
CviJI RGCY 1 cut(s) 109
CviKI_1 RGCY 1 cut(s) 109
DdeI CTNAG 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 322
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 2 cut(s) 166, 241
FaiI YATR 4 cut(s) 164, 239, 275, 364
FaqI GGGAC 1 cut(s) 132
FatI CATG 2 cut(s) 162, 237
FokI GGATG 1 cut(s) 7
GlaI GCGC 1 cut(s) 202
HhaI GCGC 1 cut(s) 203
Hin1II CATG 2 cut(s) 166, 241
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 3 cut(s) 221, 246, 333
HpaI GTTAAC 1 cut(s) 6
HphI GGTGA 2 cut(s) 58, 104
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 3 cut(s) 119, 251, 299
Hpy188III TCNNGA 1 cut(s) 229
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4IV ACGT 1 cut(s) 142
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 2 cut(s) 166, 241
HspAI GCGC 1 cut(s) 201
KspAI GTTAAC 1 cut(s) 6
LmnI GCTCC 2 cut(s) 187, 231
LpnPI CCDG 5 cut(s) 197, 273, 309, 336, 340
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 2 cut(s) 214, 350
MluCI AATT 2 cut(s) 83, 359
MlyI GAGTC 2 cut(s) 230, 342
MmeI TCCRAC 1 cut(s) 112
MseI TTAA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 324
MvaI CCWGG 1 cut(s) 324
MvnI CGCG 1 cut(s) 263
NlaIII CATG 2 cut(s) 166, 241
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 214
NspI RCATGY 1 cut(s) 241
NspV TTCGAA 1 cut(s) 244
PfeI GAWTC 1 cut(s) 246
PleI GAGTC 2 cut(s) 229, 341
PpsI GAGTC 2 cut(s) 229, 341
PsiI TTATAA 1 cut(s) 364
Psp1406I AACGTT 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 121
SaqAI TTAA 1 cut(s) 5
SchI GAGTC 2 cut(s) 230, 342
ScrFI CCNGG 1 cut(s) 324
SetI ASST 7 cut(s) 11, 106, 111, 117, 125, 145, 348
SfuI TTCGAA 1 cut(s) 244
Sse9I AATT 2 cut(s) 83, 359
SsiI CCGC 1 cut(s) 263
StyD4I CCNGG 1 cut(s) 322
TaiI ACGT 1 cut(s) 145
TaqI TCGA 1 cut(s) 244
TasI AATT 2 cut(s) 83, 359
TfiI GAWTC 1 cut(s) 246
Tru1I TTAA 1 cut(s) 5
Tru9I TTAA 1 cut(s) 5
TseFI GTSAC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 298
TspGWI ACGGA 1 cut(s) 233
XapI RAATTY 1 cut(s) 83
XceI RCATGY 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.