AT4G11640

serine racemase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007770
Physical Location & Seq
Forward (+)
7021422 .. 7023318
1897 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G11640.1

Sequence Viewer

Length: 996 bp
ATGGAAGCAAATAGAGAGAAGTATGCTGCTGATATATTGTCCATAAAAGAAGCTCATGACCGTATTAAGCCGTATATACATAGAACTCCGGTGTTAACATCTGAATCGTTGAATTCAATCTCCGGAAGAAGCTTGTTCTTTAAGTGTGAGTGCCTTCAGAAAGGTGGAGCTTTCAAATTCCGTGGAGCTTGCAATGCTGTTTTGTCTCTTGATGCTGAACAAGCAGCCAAAGGAGTTGTAACACACAGCAGTGGAAACCATGCTGCTGCATTGTCTTTGGCTGCAAAGATTCAGGGAATACCGGCATATATTGTTGTACCAAAAGGTGCTCCAAAGTGCAAAGTTGATAATGTGATCAGGTATGGTGGTAAGGTTATATGGAGTGAAGCAACAATGTCTTCTAGAGAGGAAATAGCTTCAAAAGTTTTGCAGGAAACAGGTTCAGTTCTGATCCATCCATATAATGATGGACGCATTATAAGTGGTCAGGGTACAATTGCATTGGAACTGCTGGAGCAAATCCAAGAGATTGATGCTATAGTTGTGCCGATAAGCGGGGGTGGTTTGATATCTGGTGTGGCGCTTGCTGCCAAATCTATTAAGCCTAGTATCCGGATTATAGCCGCTGAACCAAAAGGAGCTGATGATGCGGCTCAGTCTAAGGTCGCTGGTAAAATCATCACTTTACCTGTGACTAATACTATAGCTGATGGCCTTCGAGCTTCTCTTGGAGATTTAACCTGGCCGGTGGTGAGGGACTTGGTAGATGATGTTGTCACCTTGGAAGAGTGTGAAATAATCGAAGCCATGAAAATGTGCTATGAGATACTGAAGGTCTCTGTGGAACCAAGTGGAGCTATTGGCCTTGCAGCAGTTTTATCAAACAGTTTCCGCAACAATCCTTCTTGTCGTGATTGCAAAAACATAGGAATTGTACTCTCAGGAGGTAATGTTGATTTGGGCTCTCTATGGGATTCATTTAAGAGTTCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000287 GO:0002237 GO:0003674 GO:0003824 GO:0003941 GO:0005488 GO:0005509 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006090 GO:0006520 GO:0006563 GO:0006564 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0008721 GO:0009058 GO:0009069 GO:0009070 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016594 GO:0016597 GO:0016829 GO:0016840 GO:0016841 GO:0016853 GO:0016854 GO:0016855 GO:0017076 GO:0017144 GO:0018114 GO:0019752 GO:0019842 GO:0019904 GO:0022607 GO:0030165 GO:0030170 GO:0030378 GO:0030554 GO:0031406 GO:0032496 GO:0032553 GO:0032555 GO:0032559 GO:0032787 GO:0033993 GO:0035639 GO:0036094 GO:0036361 GO:0036477 GO:0042165 GO:0042221 GO:0042802 GO:0042803 GO:0042866 GO:0043025 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043207 GO:0043436 GO:0043621 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046416 GO:0046437 GO:0046872 GO:0046983 GO:0047661 GO:0048037 GO:0050662 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051704 GO:0051707 GO:0065003 GO:0070178 GO:0070179 GO:0070279 GO:0071704 GO:0071840 GO:0072330 GO:0097159 GO:0097367 GO:0097458 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00260 ko01100 map00260 map01100
Pfam Domains
Protein Families
PALP

Protein Analysis

331

Amino Acids

35.07

Weight (kDa)

6.95

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 23 - 315 3e-78 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 479
AccIII TCCGGA 2 cut(s) 122, 612
AciI CCGC 4 cut(s) 555, 624, 650, 892
AclWI GGATC 1 cut(s) 445
AcoI YGGCCR 1 cut(s) 743
AcsI RAATTY 2 cut(s) 112, 176
AcuI CTGAAG 2 cut(s) 140, 851
AfaI GTAC 3 cut(s) 318, 493, 936
AfiI CCNNNNNNNGG 1 cut(s) 554
AgsI TTSAA 5 cut(s) 112, 117, 175, 420, 990
AjnI CCWGG 1 cut(s) 740
AleI CACNNNNGTG 1 cut(s) 249
AluBI AGCT 9 cut(s) 53, 132, 170, 188, 416, 641, 707, 722, 857
AluI AGCT 9 cut(s) 53, 132, 170, 188, 416, 641, 707, 722, 857
Alw21I GWGCWC 1 cut(s) 331
Alw26I GTCTC 2 cut(s) 210, 841
AlwI GGATC 1 cut(s) 445
Aor13HI TCCGGA 2 cut(s) 122, 612
AoxI GGCC 3 cut(s) 712, 743, 862
ApeKI GCWGC 7 cut(s) 26, 224, 263, 266, 281, 587, 869
ApoI RAATTY 2 cut(s) 112, 176
AspLEI GCGC 1 cut(s) 583
AsuHPI GGTGA 2 cut(s) 763, 769
BanII GRGCYC 1 cut(s) 965
BbsI GAAGAC 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 331
BbvI GCAGC 7 cut(s) 13, 236, 250, 253, 268, 574, 881
BccI CCATC 3 cut(s) 461, 462, 704
BceAI ACGGC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 742
BciVI GTATCC 1 cut(s) 620
BclI TGATCA 1 cut(s) 354
BcoDI GTCTC 2 cut(s) 210, 841
BfaI CTAG 2 cut(s) 402, 606
BfmI CTRYAG 2 cut(s) 537, 702
BfoI RGCGCY 1 cut(s) 584
BfuI GTATCC 1 cut(s) 620
BisI GCNGC 9 cut(s) 27, 225, 264, 267, 282, 588, 624, 651, 870
BlsI GCNGC 9 cut(s) 28, 226, 265, 268, 283, 589, 625, 652, 871
Bme1390I CCNGG 1 cut(s) 742
BmiI GGNNCC 1 cut(s) 846
BmrFI CCNGG 1 cut(s) 742
BmsI GCATC 3 cut(s) 202, 523, 637
BpiI GAAGAC 1 cut(s) 390
BpmI CTGGAG 1 cut(s) 533
BsaI GGTCTC 1 cut(s) 841
BsaJI CCNNGG 2 cut(s) 181, 780
BsaWI WCCGGW 3 cut(s) 88, 122, 612
BsaXI ACNNNNNCTCC 2 cut(s) 936, 966
Bsc4I CCNNNNNNNGG 1 cut(s) 554
Bse118I RCCGGY 2 cut(s) 301, 745
Bse3DI GCAATG 1 cut(s) 199
BseAI TCCGGA 2 cut(s) 122, 612
BseBI CCWGG 1 cut(s) 742
BseDI CCNNGG 2 cut(s) 181, 780
BseGI GGATG 1 cut(s) 454
BseLI CCNNNNNNNGG 1 cut(s) 554
BseMI GCAATG 1 cut(s) 199
BseMII CTCAG 2 cut(s) 668, 954
BseXI GCAGC 7 cut(s) 13, 236, 250, 253, 268, 574, 881
BshFI GGCC 3 cut(s) 714, 745, 864
BsiHKAI GWGCWC 1 cut(s) 331
BsiSI CCGG 5 cut(s) 89, 123, 302, 613, 746
BslFI GGGAC 1 cut(s) 770
BslI CCNNNNNNNGG 1 cut(s) 554
BsmAI GTCTC 2 cut(s) 210, 841
BsmFI GGGAC 1 cut(s) 770
BsnI GGCC 3 cut(s) 714, 745, 864
Bso31I GGTCTC 1 cut(s) 841
Bsp1286I GDGCHC 2 cut(s) 331, 965
Bsp13I TCCGGA 2 cut(s) 122, 612
Bsp143I GATC 2 cut(s) 354, 450
BspACI CCGC 4 cut(s) 555, 624, 650, 892
BspANI GGCC 3 cut(s) 714, 745, 864
BspCNI CTCAG 2 cut(s) 667, 953
BspEI TCCGGA 2 cut(s) 122, 612
BspHI TCATGA 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 846
BspPI GGATC 1 cut(s) 445
BspTNI GGTCTC 1 cut(s) 841
BsrDI GCAATG 1 cut(s) 199
BsrFI RCCGGY 2 cut(s) 301, 745
BssAI RCCGGY 2 cut(s) 301, 745
BssECI CCNNGG 2 cut(s) 181, 780
BssMI GATC 2 cut(s) 354, 450
BssT1I CCWWGG 1 cut(s) 780
Bst2UI CCWGG 1 cut(s) 742
Bst4CI ACNGT 2 cut(s) 62, 887
Bst6I CTCTTC 1 cut(s) 780
BstC8I GCNNGC 2 cut(s) 190, 585
BstDEI CTNAG 3 cut(s) 654, 660, 940
BstDSI CCRYGG 1 cut(s) 181
BstF5I GGATG 1 cut(s) 454
BstH2I RGCGCY 1 cut(s) 584
BstHHI GCGC 1 cut(s) 583
BstKTI GATC 2 cut(s) 357, 453
BstMAI GTCTC 2 cut(s) 210, 841
BstMBI GATC 2 cut(s) 354, 450
BstMWI GCNNNNNNNGC 4 cut(s) 194, 221, 587, 647
BstNI CCWGG 1 cut(s) 742
BstSCI CCNGG 1 cut(s) 740
BstSFI CTRYAG 2 cut(s) 537, 702
BstV1I GCAGC 7 cut(s) 13, 236, 250, 253, 268, 574, 881
BstV2I GAAGAC 1 cut(s) 390
BsuI GTATCC 1 cut(s) 620
BsuRI GGCC 3 cut(s) 714, 745, 864
BtgI CCRYGG 1 cut(s) 181
BtsCI GGATG 1 cut(s) 454
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 256
Cac8I GCNNGC 2 cut(s) 190, 585
CciI TCATGA 1 cut(s) 55
CfoI GCGC 1 cut(s) 583
Cfr10I RCCGGY 2 cut(s) 301, 745
CseI GACGC 1 cut(s) 480
Csp6I GTAC 3 cut(s) 317, 492, 935
CspCI CAANNNNNGTGG 2 cut(s) 163, 198
CviAII CATG 3 cut(s) 56, 260, 808
CviQI GTAC 3 cut(s) 317, 492, 935
DdeI CTNAG 3 cut(s) 654, 660, 940
DpnI GATC 2 cut(s) 356, 452
DpnII GATC 2 cut(s) 354, 450
EaeI YGGCCR 1 cut(s) 743
Eam1104I CTCTTC 1 cut(s) 780
EarI CTCTTC 1 cut(s) 780
Eco130I CCWWGG 1 cut(s) 780
Eco24I GRGCYC 1 cut(s) 965
Eco31I GGTCTC 1 cut(s) 841
Eco32I GATATC 1 cut(s) 570
Eco57I CTGAAG 2 cut(s) 140, 851
EcoRI GAATTC 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 740
EcoRV GATATC 1 cut(s) 570
EcoT14I CCWWGG 1 cut(s) 780
EcoT38I GRGCYC 1 cut(s) 965
ErhI CCWWGG 1 cut(s) 780
FaeI CATG 3 cut(s) 59, 263, 811
FaqI GGGAC 1 cut(s) 770
FatI CATG 3 cut(s) 55, 259, 807
FauI CCCGC 1 cut(s) 548
FbaI TGATCA 1 cut(s) 354
Fnu4HI GCNGC 9 cut(s) 27, 225, 264, 267, 282, 588, 624, 651, 870
FokI GGATG 1 cut(s) 441
FriOI GRGCYC 1 cut(s) 965
Fsp4HI GCNGC 9 cut(s) 27, 225, 264, 267, 282, 588, 624, 651, 870
FspBI CTAG 2 cut(s) 402, 606
GlaI GCGC 1 cut(s) 582
GluI GCNGC 9 cut(s) 27, 225, 264, 267, 282, 588, 624, 651, 870
GsuI CTGGAG 1 cut(s) 533
HaeII RGCGCY 1 cut(s) 584
HaeIII GGCC 3 cut(s) 714, 745, 864
HapII CCGG 5 cut(s) 89, 123, 302, 613, 746
HgaI GACGC 1 cut(s) 480
HhaI GCGC 1 cut(s) 583
Hin1II CATG 3 cut(s) 59, 263, 811
Hin6I GCGC 1 cut(s) 581
HinP1I GCGC 1 cut(s) 581
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
HindIII AAGCTT 1 cut(s) 130
HinfI GANTC 3 cut(s) 104, 289, 974
HpaI GTTAAC 1 cut(s) 96
HpaII CCGG 5 cut(s) 89, 123, 302, 613, 746
HphI GGTGA 2 cut(s) 763, 769
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 3 cut(s) 103, 159, 450
Hpy188III TCNNGA 7 cut(s) 56, 123, 209, 402, 613, 911, 942
Hpy8I GTNNAC 1 cut(s) 96
HpyAV CCTTC 4 cut(s) 164, 725, 826, 912
HpyCH4III ACNGT 2 cut(s) 62, 887
HpyCH4V TGCA 8 cut(s) 192, 269, 284, 339, 430, 500, 869, 918
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 221, 587, 647
HpyF3I CTNAG 3 cut(s) 654, 660, 940
Hsp92II CATG 3 cut(s) 59, 263, 811
HspAI GCGC 1 cut(s) 581
Kpn2I TCCGGA 2 cut(s) 122, 612
Ksp22I TGATCA 1 cut(s) 354
KspAI GTTAAC 1 cut(s) 96
Kzo9I GATC 2 cut(s) 354, 450
LmnI GCTCC 6 cut(s) 167, 185, 334, 514, 638, 854
Lsp1109I GCAGC 7 cut(s) 13, 236, 250, 253, 268, 574, 881
LweI GCATC 3 cut(s) 202, 523, 637
MaeI CTAG 2 cut(s) 402, 606
MaeIII GTNAC 3 cut(s) 238, 691, 775
MalI GATC 2 cut(s) 356, 452
MboI GATC 2 cut(s) 354, 450
MboII GAAGA 3 cut(s) 138, 390, 797
MfeI CAATTG 1 cut(s) 495
MhlI GDGCHC 2 cut(s) 331, 965
MluCI AATT 4 cut(s) 112, 176, 495, 930
MnlI CCTC 3 cut(s) 400, 747, 938
MroI TCCGGA 2 cut(s) 122, 612
MseI TTAA 6 cut(s) 66, 95, 141, 600, 737, 981
MslI CAYNNNNRTG 2 cut(s) 249, 812
MspA1I CMGCKG 1 cut(s) 626
MspI CCGG 5 cut(s) 89, 123, 302, 613, 746
MspR9I CCNGG 1 cut(s) 742
MunI CAATTG 1 cut(s) 495
MvaI CCWGG 1 cut(s) 742
MwoI GCNNNNNNNGC 4 cut(s) 194, 221, 587, 647
NdeII GATC 2 cut(s) 354, 450
NlaIII CATG 3 cut(s) 59, 263, 811
NlaIV GGNNCC 1 cut(s) 846
NmuCI GTSAC 2 cut(s) 691, 775
OliI CACNNNNGTG 1 cut(s) 249
PagI TCATGA 1 cut(s) 55
PfeI GAWTC 3 cut(s) 104, 289, 974
PkrI GCNGC 9 cut(s) 28, 226, 265, 268, 283, 589, 625, 652, 871
PsiI TTATAA 1 cut(s) 479
Psp6I CCWGG 1 cut(s) 740
PspGI CCWGG 1 cut(s) 740
PspN4I GGNNCC 1 cut(s) 846
RsaI GTAC 3 cut(s) 318, 493, 936
RsaNI GTAC 3 cut(s) 317, 492, 935
RseI CAYNNNNRTG 2 cut(s) 249, 812
SaqAI TTAA 6 cut(s) 66, 95, 141, 600, 737, 981
SatI GCNGC 9 cut(s) 27, 225, 264, 267, 282, 588, 624, 651, 870
Sau3AI GATC 2 cut(s) 354, 450
ScrFI CCNGG 1 cut(s) 742
SduI GDGCHC 2 cut(s) 331, 965
SfaNI GCATC 3 cut(s) 202, 523, 637
SfcI CTRYAG 2 cut(s) 537, 702
SmiMI CAYNNNNRTG 2 cut(s) 249, 812
Sse9I AATT 4 cut(s) 112, 176, 495, 930
SsiI CCGC 4 cut(s) 555, 624, 650, 892
SspMI CTAG 2 cut(s) 402, 606
StyD4I CCNGG 1 cut(s) 740
StyI CCWWGG 1 cut(s) 780
TaaI ACNGT 2 cut(s) 62, 887
TaqI TCGA 2 cut(s) 718, 801
TasI AATT 4 cut(s) 112, 176, 495, 930
TatI WGTACW 1 cut(s) 934
TauI GCSGC 2 cut(s) 626, 653
TfiI GAWTC 3 cut(s) 104, 289, 974
Tru1I TTAA 6 cut(s) 66, 95, 141, 600, 737, 981
Tru9I TTAA 6 cut(s) 66, 95, 141, 600, 737, 981
TscAI CASTG 1 cut(s) 256
TseFI GTSAC 2 cut(s) 691, 775
TseI GCWGC 7 cut(s) 26, 224, 263, 266, 281, 587, 869
Tsp45I GTSAC 2 cut(s) 691, 775
TspDTI ATGAA 2 cut(s) 824, 966
TspGWI ACGGA 1 cut(s) 170
TspRI CASTG 1 cut(s) 256
XapI RAATTY 2 cut(s) 112, 176
XbaI TCTAGA 1 cut(s) 401
XspI CTAG 2 cut(s) 402, 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.