Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007770

Physical Location & Seq

Genomic Coordinates Forward (+)

12475104 .. 12476506

Gene Structure 1403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g07630.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCAGTCAAGGGAAAGTACAGCAGCTACGGTGTTGCATGAAACTGGTGCAGTTCTTCTCCATCCTTACAATGACAGGCGCATAATAAGTGGGCAGGGTACCATTTCACTGGAGCTTCTGGAGCAACAAGTTCCACAGTTAGACGGCATTATAGTACCCATAAGTGGAGGTGGCTTGATATCAGGGGTGGCTTTGGCTGCCAAGTCCATCAACCCTGCGATTCGAATTTTTGCAGCTGAACCTGAGGGTGCTAACGATGCAGCTCAATCCAAATCAGCTGGGAGGATAATAACATTGCCTGAGACCAACACTGTTGCAGATGGGCTTCGAGCTTTTCTTGGAGACCTTACTTGGCCCATTGTAAGAGATCTTGTCGATGGCGTTATAACTGTAAATGACGAGGAGATAATAAATGCTATGAAACTCTGTTACGAGATTTTGAAGGTTGCAGTAGAACCCAGTGGAGCAATAGGCCTTGCTGCTGTTTTGTCCAAAAGTTTCAAGAAAAATTCTGCTTGGAAGGATTGCAGCAACATCGGAATTATACTTTCTGGAGGTAATGTAGATCTAGGCATCCTATGGGATGCCTACAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0002237 GO:0003674 GO:0003824 GO:0003941 GO:0005488 GO:0005509 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006090 GO:0006520 GO:0006563 GO:0006564 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0008721 GO:0009058 GO:0009069 GO:0009070 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016594 GO:0016597 GO:0016829 GO:0016840 GO:0016841 GO:0016853 GO:0016854 GO:0016855 GO:0017076 GO:0017144 GO:0018114 GO:0019752 GO:0019842 GO:0019904 GO:0022607 GO:0030165 GO:0030170 GO:0030378 GO:0030554 GO:0031406 GO:0032496 GO:0032553 GO:0032555 GO:0032559 GO:0032787 GO:0033993 GO:0035639 GO:0036094 GO:0036361 GO:0036477 GO:0042165 GO:0042221 GO:0042802 GO:0042803 GO:0042866 GO:0043025 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043207 GO:0043436 GO:0043621 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046416 GO:0046437 GO:0046872 GO:0046983 GO:0047661 GO:0048037 GO:0050662 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051704 GO:0051707 GO:0065003 GO:0070178 GO:0070179 GO:0070279 GO:0071704 GO:0071840 GO:0072330 GO:0097159 GO:0097367 GO:0097458 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 map00260 map01100

Pfam Domains

Protein Families

PALP

Protein Analysis

200

Amino Acids

21.0

Weight (kDa)

5.05

Isoelectric Point (pI)

30.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11640
fragaria_vesca	FvH4_5g02070 FvH4_5g02070
malus_domestica	MD06G1079200.v1.1
prunus_persica	Prupe.5G097600_v2.0.a1 Prupe.5G097600_v2.0.a1 Prupe.5G097600_v2.0.a1 Prupe.5G097600_v2.0.a1 Prupe.5G097600_v2.0.a1 Prupe.5G097600_v2.0.a1 Prupe.5G097600_v2.0.a1 Prupe.5G097800_v2.0.a1
pyrus_communis	pycom06g07630
rosa_chinensis	RchiOBHm_Chr7g0198231
rosa_laevigata	RLG00000003883
rosa_multiflora	Rmu_sc0029767.1_g000001 Rmu_sc0029768.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257920
rosa_rugosa	Rorug07G0046000
rosa_samantha	Rh7AG169600 Rh7BG172800 Rh7CG179300 Rh7DG172100
rosa_wichuraiana	Rw7G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	386
Acc65I	GGTACC	1 cut(s)	98
AccB1I	GGYRCC	1 cut(s)	98
AcsI	RAATTY	2 cut(s)	225, 508
AfaI	GTAC	3 cut(s)	19, 100, 156
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	2 cut(s)	442, 502
AluBI	AGCT	6 cut(s)	26, 115, 236, 263, 278, 332
AluI	AGCT	6 cut(s)	26, 115, 236, 263, 278, 332
Alw26I	GTCTC	2 cut(s)	296, 336
AoxI	GGCC	2 cut(s)	353, 472
ApeKI	GCWGC	6 cut(s)	23, 197, 233, 260, 479, 528
ApoI	RAATTY	2 cut(s)	225, 508
Asp718I	GGTACC	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	354
AsuII	TTCGAA	1 cut(s)	223
AxyI	CCTNAGG	1 cut(s)	243
BanI	GGYRCC	1 cut(s)	98
BbvI	GCAGC	6 cut(s)	35, 184, 245, 272, 466, 540
BccI	CCATC	4 cut(s)	69, 215, 314, 371
BceAI	ACGGC	1 cut(s)	160
BcgI	CGANNNNNNTGC	2 cut(s)	517, 551
BcoDI	GTCTC	2 cut(s)	296, 336
BfaI	CTAG	1 cut(s)	569
BglII	AGATCT	2 cut(s)	367, 565
BisI	GCNGC	6 cut(s)	24, 198, 234, 261, 480, 529
BlsI	GCNGC	6 cut(s)	25, 199, 235, 262, 481, 530
BmgT120I	GGNCC	1 cut(s)	354
BmiI	GGNNCC	1 cut(s)	100
BmrI	ACTGGG	1 cut(s)	453
BmsI	GCATC	3 cut(s)	247, 574, 582
BmuI	ACTGGG	1 cut(s)	453
BpmI	CTGGAG	3 cut(s)	131, 140, 573
Bpu14I	TTCGAA	1 cut(s)	223
BsaI	GGTCTC	2 cut(s)	296, 336
BsaXI	ACNNNNNCTCC	2 cut(s)	546, 576
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	3 cut(s)	49, 114, 459
Bse21I	CCTNAGG	1 cut(s)	243
Bse3DI	GCAATG	1 cut(s)	293
BseGI	GGATG	3 cut(s)	61, 573, 589
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMI	GCAATG	1 cut(s)	293
BseMII	CTCAG	2 cut(s)	234, 291
BseNI	ACTGG	3 cut(s)	49, 114, 459
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	6 cut(s)	35, 184, 245, 272, 466, 540
BseYI	CCCAGC	1 cut(s)	278
BsgI	GTGCAG	1 cut(s)	69
BshFI	GGCC	2 cut(s)	355, 474
BshNI	GGYRCC	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	2 cut(s)	296, 336
BsnI	GGCC	2 cut(s)	355, 474
Bso31I	GGTCTC	2 cut(s)	296, 336
Bsp119I	TTCGAA	1 cut(s)	223
Bsp143I	GATC	2 cut(s)	367, 565
BspANI	GGCC	2 cut(s)	355, 474
BspCNI	CTCAG	2 cut(s)	235, 292
BspLI	GGNNCC	1 cut(s)	100
BspT104I	TTCGAA	1 cut(s)	223
BspT107I	GGYRCC	1 cut(s)	98
BspTNI	GGTCTC	2 cut(s)	296, 336
BsrDI	GCAATG	1 cut(s)	293
BsrI	ACTGG	3 cut(s)	49, 114, 459
BssMI	GATC	2 cut(s)	367, 565
Bst4CI	ACNGT	4 cut(s)	31, 138, 313, 391
BstBI	TTCGAA	1 cut(s)	223
BstDEI	CTNAG	2 cut(s)	243, 300
BstF5I	GGATG	3 cut(s)	61, 573, 589
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	2 cut(s)	370, 568
BstMAI	GTCTC	2 cut(s)	296, 336
BstMBI	GATC	2 cut(s)	367, 565
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 197, 257
BstV1I	GCAGC	6 cut(s)	35, 184, 245, 272, 466, 540
BstX2I	RGATCY	2 cut(s)	367, 565
BstXI	CCANNNNNNTGG	1 cut(s)	109
BstYI	RGATCY	2 cut(s)	367, 565
Bsu36I	CCTNAGG	1 cut(s)	243
BsuRI	GGCC	2 cut(s)	355, 474
BtsCI	GGATG	3 cut(s)	61, 573, 589
BtsIMutI	CAGTG	3 cut(s)	107, 309, 466
CfoI	GCGC	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	354
Csp6I	GTAC	3 cut(s)	18, 99, 155
CviAII	CATG	1 cut(s)	38
CviQI	GTAC	3 cut(s)	18, 99, 155
DdeI	CTNAG	2 cut(s)	243, 300
DpnI	GATC	2 cut(s)	369, 567
DpnII	GATC	2 cut(s)	367, 565
Eco147I	AGGCCT	1 cut(s)	474
Eco31I	GGTCTC	2 cut(s)	296, 336
Eco32I	GATATC	1 cut(s)	180
Eco81I	CCTNAGG	1 cut(s)	243
EcoRV	GATATC	1 cut(s)	180
FaeI	CATG	1 cut(s)	41
FaiI	YATR	8 cut(s)	39, 83, 152, 161, 386, 419, 545, 580
FatI	CATG	1 cut(s)	37
Fnu4HI	GCNGC	6 cut(s)	24, 198, 234, 261, 480, 529
FokI	GGATG	3 cut(s)	48, 560, 596
Fsp4HI	GCNGC	6 cut(s)	24, 198, 234, 261, 480, 529
FspBI	CTAG	1 cut(s)	569
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	6 cut(s)	24, 198, 234, 261, 480, 529
GsaI	CCCAGC	1 cut(s)	282
GsuI	CTGGAG	3 cut(s)	131, 140, 573
HaeIII	GGCC	2 cut(s)	355, 474
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	1 cut(s)	41
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HinfI	GANTC	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	539
Hpy188III	TCNNGA	3 cut(s)	119, 502, 552
HpyAV	CCTTC	2 cut(s)	436, 514
HpyCH4III	ACNGT	4 cut(s)	31, 138, 313, 391
HpyCH4V	TGCA	8 cut(s)	4, 37, 50, 233, 260, 317, 449, 528
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 197, 257
HpyF3I	CTNAG	2 cut(s)	243, 300
Hsp92II	CATG	1 cut(s)	41
HspAI	GCGC	1 cut(s)	79
KpnI	GGTACC	1 cut(s)	102
Kzo9I	GATC	2 cut(s)	367, 565
LmnI	GCTCC	3 cut(s)	112, 121, 464
Lsp1109I	GCAGC	6 cut(s)	35, 184, 245, 272, 466, 540
LweI	GCATC	3 cut(s)	247, 574, 582
MaeI	CTAG	1 cut(s)	569
MaeIII	GTNAC	1 cut(s)	428
MalI	GATC	2 cut(s)	369, 567
MboI	GATC	2 cut(s)	367, 565
MboII	GAAGA	1 cut(s)	47
MflI	RGATCY	2 cut(s)	367, 565
MluCI	AATT	3 cut(s)	225, 508, 540
MnlI	CCTC	5 cut(s)	161, 238, 276, 394, 548
MspA1I	CMGCKG	2 cut(s)	236, 278
MwoI	GCNNNNNNNGC	3 cut(s)	121, 197, 257
NdeII	GATC	2 cut(s)	367, 565
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	1 cut(s)	100
NspV	TTCGAA	1 cut(s)	223
PceI	AGGCCT	1 cut(s)	474
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	6 cut(s)	25, 199, 235, 262, 481, 530
PsiI	TTATAA	1 cut(s)	386
PspFI	CCCAGC	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	100
PspPI	GGNCC	1 cut(s)	354
PsuI	RGATCY	2 cut(s)	367, 565
PvuII	CAGCTG	2 cut(s)	236, 278
RsaI	GTAC	3 cut(s)	19, 100, 156
RsaNI	GTAC	3 cut(s)	18, 99, 155
SatI	GCNGC	6 cut(s)	24, 198, 234, 261, 480, 529
Sau3AI	GATC	2 cut(s)	367, 565
Sau96I	GGNCC	1 cut(s)	354
SfaNI	GCATC	3 cut(s)	247, 574, 582
SfuI	TTCGAA	1 cut(s)	223
Sse9I	AATT	3 cut(s)	225, 508, 540
SseBI	AGGCCT	1 cut(s)	474
SspMI	CTAG	1 cut(s)	569
StuI	AGGCCT	1 cut(s)	474
TaaI	ACNGT	4 cut(s)	31, 138, 313, 391
TaqI	TCGA	3 cut(s)	223, 328, 375
TasI	AATT	3 cut(s)	225, 508, 540
TatI	WGTACW	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	220
TscAI	CASTG	3 cut(s)	114, 316, 466
TseI	GCWGC	6 cut(s)	23, 197, 233, 260, 479, 528
TspDTI	ATGAA	2 cut(s)	54, 434
TspRI	CASTG	3 cut(s)	114, 316, 466
XapI	RAATTY	2 cut(s)	225, 508
XspI	CTAG	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.