Rw7G014830

Serine racemase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0007770
Physical Location & Seq
Forward (+)
14644484 .. 14647877
3394 bp
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UTR
Exon/CDS
Intron
Rw7G014830.1

Sequence Viewer

Length: 1101 bp
ATGGAAGCAGAGAGTCAAATGAGGGAGATAAAATATGCTGCTGATATTTCGTCTATAAAGGAAGCACAGGCACGCATCAAGCCGTTCATACACGAAACTCCAGTCCTGTCCTCTGAAACTTTGAATCTTCTTTCAGGAAGACAGCTGTTTTTCAAATGTGAATGTTTCCAAAAGGGTGGCGCTTTCAAATTCAGAGGCGCTTGCAATGCCGTGTTTTCACTTGATGATGATCAGGCTGCTAAAGGGGTTGTAACACATAGCAGTGGTAACCATGCTGCAGCATTGTCTTTGGCTGCAAAACTACGGGGTATTCCTGCATATATAGTTATACCGAAAAATGCTCCAAAATGCAAAGTTGAGAATGTCGTGCGTTACGGCGGCCAGGTTATCTGGAGTGAGCCAACAATGCAGTCGAGGGAAAGTACTGCAGCCAAGGTACTGCAAGAAACTGGCGCAGTTCTTCTACATCCCTACAATGACAGGCGCATAATAAGGTACAAGAGTGACTTTTATGGCCAGGGTACCATATCATTGGAGTTACTGGAGCAACAAGTTCCACATTTAGATGCTATTGTAGTTCCCATAAGTGGAGGTGGCTTGATATCAGGTGTGGCTTTAGCTGCTAAGTCCATCAATCCTGCCATTCGAGTTTTTGCTGCTGAACCTGAGGGAGCTAATGATGCAGCTCAATCCAAAGAAGCTGGAAGGATAATAACATTGTCTGAGACCAACACTGTAGCAGATGGACTTCGAGCTTTTCTGGGAGATCTGACCTGGCCAATTGTAAGAGATCTTGTCGATGGCATTGTAACTGTAGAGGACAAGGAGATAATAAATGCAATGAAACTCTGTTACGAGATTCTGAAGGTTGCAGTAGAACCTAGTGGAGCAATAGGCCTCGCAGCTGTTTTATCTGATAGTTTCAAGAACAATCCTGCATGGAAGGATTGCACCAATATAGGAATCATTCTTTCTGGAGATTGGGAATCCGGATGGTTCAAATCCATAATCTCTTGCAAACAAGTATCCGATACCTGGTTAAACATGCTTACACTCAATGCAATCTATTATGCACCTTCGAAACCAATAGTAAAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000287 GO:0002237 GO:0003674 GO:0003824 GO:0003941 GO:0005488 GO:0005509 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006090 GO:0006520 GO:0006563 GO:0006564 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0008721 GO:0009058 GO:0009069 GO:0009070 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016594 GO:0016597 GO:0016829 GO:0016840 GO:0016841 GO:0016853 GO:0016854 GO:0016855 GO:0017076 GO:0017144 GO:0018114 GO:0019752 GO:0019842 GO:0019904 GO:0022607 GO:0030165 GO:0030170 GO:0030378 GO:0030554 GO:0031406 GO:0032496 GO:0032553 GO:0032555 GO:0032559 GO:0032787 GO:0033993 GO:0035639 GO:0036094 GO:0036361 GO:0036477 GO:0042165 GO:0042221 GO:0042802 GO:0042803 GO:0042866 GO:0043025 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043207 GO:0043436 GO:0043621 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046416 GO:0046437 GO:0046872 GO:0046983 GO:0047661 GO:0048037 GO:0050662 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051704 GO:0051707 GO:0065003 GO:0070178 GO:0070179 GO:0070279 GO:0071704 GO:0071840 GO:0072330 GO:0097159 GO:0097367 GO:0097458 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00260 ko01100 map00260 map01100
Pfam Domains
Protein Families
PALP

Protein Analysis

366

Amino Acids

39.68

Weight (kDa)

6.55

Isoelectric Point (pI)

30.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 27 - 325 5.3e-73 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 521
AccB1I GGYRCC 1 cut(s) 521
AccIII TCCGGA 1 cut(s) 989
AciI CCGC 1 cut(s) 378
AcoI YGGCCR 3 cut(s) 379, 514, 776
AcsI RAATTY 1 cut(s) 188
AcuI CTGAAG 1 cut(s) 884
AfaI GTAC 4 cut(s) 424, 438, 497, 523
AfiI CCNNNNNNNGG 2 cut(s) 587, 1035
AgsI TTSAA 5 cut(s) 124, 154, 187, 925, 1000
AjnI CCWGG 4 cut(s) 381, 516, 773, 1034
AluBI AGCT 7 cut(s) 145, 620, 674, 686, 701, 755, 905
AluI AGCT 7 cut(s) 145, 620, 674, 686, 701, 755, 905
Alw26I GTCTC 1 cut(s) 719
Aor13HI TCCGGA 1 cut(s) 989
AoxI GGCC 4 cut(s) 379, 514, 776, 895
ApoI RAATTY 1 cut(s) 188
ArsI GACNNNNNNTTYG 2 cut(s) 87, 119
Asp718I GGTACC 1 cut(s) 521
AspLEI GCGC 4 cut(s) 182, 200, 455, 486
AsuII TTCGAA 1 cut(s) 1079
AxyI CCTNAGG 1 cut(s) 666
BaeI ACNNNNGTAYC 2 cut(s) 487, 520
BalI TGGCCA 2 cut(s) 516, 778
BanI GGYRCC 1 cut(s) 521
BbsI GAAGAC 1 cut(s) 145
BccI CCATC 4 cut(s) 638, 737, 794, 987
BceAI ACGGC 3 cut(s) 67, 194, 391
BciT130I CCWGG 4 cut(s) 383, 518, 775, 1036
BciVI GTATCC 1 cut(s) 1036
BclI TGATCA 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 719
BfaI CTAG 1 cut(s) 882
BfmI CTRYAG 4 cut(s) 276, 426, 735, 813
BfoI RGCGCY 2 cut(s) 183, 201
BfuI GTATCC 1 cut(s) 1036
BglII AGATCT 2 cut(s) 766, 790
BmcAI AGTACT 1 cut(s) 424
Bme1390I CCNGG 4 cut(s) 383, 518, 775, 1036
BmiI GGNNCC 1 cut(s) 523
BmrFI CCNGG 4 cut(s) 383, 518, 775, 1036
BmsI GCATC 3 cut(s) 84, 556, 670
BpiI GAAGAC 1 cut(s) 145
BpmI CTGGAG 4 cut(s) 84, 412, 563, 996
Bpu14I TTCGAA 1 cut(s) 1079
BsaBI GATNNNNATC 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 719
BsaJI CCNNGG 2 cut(s) 432, 517
BsaWI WCCGGW 1 cut(s) 989
Bsc4I CCNNNNNNNGG 2 cut(s) 587, 1035
Bse1I ACTGG 3 cut(s) 101, 454, 546
Bse21I CCTNAGG 1 cut(s) 666
Bse3DI GCAATG 2 cut(s) 211, 846
Bse8I GATNNNNATC 1 cut(s) 228
BseAI TCCGGA 1 cut(s) 989
BseBI CCWGG 4 cut(s) 383, 518, 775, 1036
BseDI CCNNGG 2 cut(s) 432, 517
BseGI GGATG 2 cut(s) 466, 998
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 2 cut(s) 587, 1035
BseMI GCAATG 2 cut(s) 211, 846
BseMII CTCAG 2 cut(s) 657, 714
BseNI ACTGG 3 cut(s) 101, 454, 546
BshFI GGCC 4 cut(s) 381, 516, 778, 897
BshNI GGYRCC 1 cut(s) 521
BsiSI CCGG 1 cut(s) 990
BslI CCNNNNNNNGG 2 cut(s) 587, 1035
BsmAI GTCTC 1 cut(s) 719
BsnI GGCC 4 cut(s) 381, 516, 778, 897
Bso31I GGTCTC 1 cut(s) 719
Bsp119I TTCGAA 1 cut(s) 1079
Bsp13I TCCGGA 1 cut(s) 989
Bsp143I GATC 3 cut(s) 229, 766, 790
BspACI CCGC 1 cut(s) 378
BspANI GGCC 4 cut(s) 381, 516, 778, 897
BspCNI CTCAG 2 cut(s) 658, 715
BspEI TCCGGA 1 cut(s) 989
BspLI GGNNCC 1 cut(s) 523
BspMAI CTGCAG 2 cut(s) 280, 430
BspT104I TTCGAA 1 cut(s) 1079
BspT107I GGYRCC 1 cut(s) 521
BspTNI GGTCTC 1 cut(s) 719
BsrDI GCAATG 2 cut(s) 211, 846
BsrI ACTGG 3 cut(s) 101, 454, 546
BssECI CCNNGG 2 cut(s) 432, 517
BssMI GATC 3 cut(s) 229, 766, 790
BssT1I CCWWGG 1 cut(s) 432
Bst2UI CCWGG 4 cut(s) 383, 518, 775, 1036
Bst4CI ACNGT 2 cut(s) 736, 814
BstBI TTCGAA 1 cut(s) 1079
BstC8I GCNNGC 2 cut(s) 73, 202
BstDEI CTNAG 3 cut(s) 624, 666, 723
BstEII GGTNACC 1 cut(s) 266
BstF5I GGATG 2 cut(s) 466, 998
BstH2I RGCGCY 2 cut(s) 183, 201
BstHHI GCGC 4 cut(s) 182, 200, 455, 486
BstKTI GATC 3 cut(s) 232, 769, 793
BstMAI GTCTC 1 cut(s) 719
BstMBI GATC 3 cut(s) 229, 766, 790
BstMWI GCNNNNNNNGC 4 cut(s) 206, 406, 620, 680
BstNI CCWGG 4 cut(s) 383, 518, 775, 1036
BstNSI RCATGY 1 cut(s) 1048
BstPI GGTNACC 1 cut(s) 266
BstSCI CCNGG 4 cut(s) 381, 516, 773, 1034
BstSFI CTRYAG 4 cut(s) 276, 426, 735, 813
BstV2I GAAGAC 1 cut(s) 145
BstX2I RGATCY 2 cut(s) 766, 790
BstXI CCANNNNNNTGG 2 cut(s) 176, 532
BstYI RGATCY 2 cut(s) 766, 790
Bsu36I CCTNAGG 1 cut(s) 666
BsuI GTATCC 1 cut(s) 1036
BsuRI GGCC 4 cut(s) 381, 516, 778, 897
BtsCI GGATG 2 cut(s) 466, 998
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 2 cut(s) 268, 732
Cac8I GCNNGC 2 cut(s) 73, 202
CfoI GCGC 4 cut(s) 182, 200, 455, 486
CsiI ACCWGGT 1 cut(s) 1034
Csp6I GTAC 4 cut(s) 423, 437, 496, 522
CviAII CATG 3 cut(s) 272, 939, 1045
CviQI GTAC 4 cut(s) 423, 437, 496, 522
DdeI CTNAG 3 cut(s) 624, 666, 723
DpnI GATC 3 cut(s) 231, 768, 792
DpnII GATC 3 cut(s) 229, 766, 790
EaeI YGGCCR 3 cut(s) 379, 514, 776
Eco130I CCWWGG 1 cut(s) 432
Eco147I AGGCCT 1 cut(s) 897
Eco31I GGTCTC 1 cut(s) 719
Eco32I GATATC 1 cut(s) 603
Eco57I CTGAAG 1 cut(s) 884
Eco81I CCTNAGG 1 cut(s) 666
Eco91I GGTNACC 1 cut(s) 266
EcoO65I GGTNACC 1 cut(s) 266
EcoRII CCWGG 4 cut(s) 381, 516, 773, 1034
EcoRV GATATC 1 cut(s) 603
EcoT14I CCWWGG 1 cut(s) 432
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 3 cut(s) 275, 942, 1048
FalI AAGNNNNNCTT 2 cut(s) 491, 523
FatI CATG 3 cut(s) 271, 938, 1044
FbaI TGATCA 1 cut(s) 229
FokI GGATG 2 cut(s) 453, 1005
FspBI CTAG 1 cut(s) 882
GlaI GCGC 4 cut(s) 181, 199, 454, 485
GsuI CTGGAG 4 cut(s) 84, 412, 563, 996
HaeII RGCGCY 2 cut(s) 183, 201
HaeIII GGCC 4 cut(s) 381, 516, 778, 897
HapII CCGG 1 cut(s) 990
HhaI GCGC 4 cut(s) 182, 200, 455, 486
Hin1II CATG 3 cut(s) 275, 942, 1048
Hin6I GCGC 4 cut(s) 180, 198, 453, 484
HinP1I GCGC 4 cut(s) 180, 198, 453, 484
HinfI GANTC 5 cut(s) 13, 124, 859, 963, 986
HpaII CCGG 1 cut(s) 990
Hpy188I TCNGA 7 cut(s) 115, 194, 724, 771, 864, 916, 1030
Hpy188III TCNNGA 5 cut(s) 135, 391, 925, 975, 990
HpyAV CCTTC 4 cut(s) 699, 859, 937, 1086
HpyCH4III ACNGT 2 cut(s) 736, 814
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 406, 620, 680
HpyF3I CTNAG 3 cut(s) 624, 666, 723
Hsp92II CATG 3 cut(s) 275, 942, 1048
HspAI GCGC 4 cut(s) 180, 198, 453, 484
Kpn2I TCCGGA 1 cut(s) 989
KpnI GGTACC 1 cut(s) 525
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 3 cut(s) 229, 766, 790
LmnI GCTCC 4 cut(s) 346, 544, 671, 887
LweI GCATC 3 cut(s) 84, 556, 670
MabI ACCWGGT 1 cut(s) 1034
MaeI CTAG 1 cut(s) 882
MaeIII GTNAC 7 cut(s) 250, 266, 371, 503, 537, 808, 851
MalI GATC 3 cut(s) 231, 768, 792
MboI GATC 3 cut(s) 229, 766, 790
MboII GAAGA 3 cut(s) 119, 150, 452
MfeI CAATTG 1 cut(s) 780
MflI RGATCY 2 cut(s) 766, 790
MlsI TGGCCA 2 cut(s) 516, 778
MluCI AATT 3 cut(s) 188, 780, 1096
MluNI TGGCCA 2 cut(s) 516, 778
MlyI GAGTC 1 cut(s) 22
MnlI CCTC 8 cut(s) 15, 121, 188, 408, 584, 661, 811, 908
Mox20I TGGCCA 2 cut(s) 516, 778
MroI TCCGGA 1 cut(s) 989
MscI TGGCCA 2 cut(s) 516, 778
MseI TTAA 1 cut(s) 1040
MslI CAYNNNNRTG 2 cut(s) 261, 564
Msp20I TGGCCA 2 cut(s) 516, 778
MspA1I CMGCKG 2 cut(s) 145, 905
MspI CCGG 1 cut(s) 990
MspR9I CCNGG 4 cut(s) 383, 518, 775, 1036
MunI CAATTG 1 cut(s) 780
MvaI CCWGG 4 cut(s) 383, 518, 775, 1036
MwoI GCNNNNNNNGC 4 cut(s) 206, 406, 620, 680
NdeII GATC 3 cut(s) 229, 766, 790
NlaIII CATG 3 cut(s) 275, 942, 1048
NlaIV GGNNCC 1 cut(s) 523
NmuCI GTSAC 1 cut(s) 503
NspI RCATGY 1 cut(s) 1048
NspV TTCGAA 1 cut(s) 1079
PceI AGGCCT 1 cut(s) 897
PfeI GAWTC 4 cut(s) 124, 859, 963, 986
PleI GAGTC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 21
Psp6I CCWGG 4 cut(s) 381, 516, 773, 1034
PspEI GGTNACC 1 cut(s) 266
PspGI CCWGG 4 cut(s) 381, 516, 773, 1034
PspN4I GGNNCC 1 cut(s) 523
PstI CTGCAG 2 cut(s) 280, 430
PsuI RGATCY 2 cut(s) 766, 790
PvuII CAGCTG 2 cut(s) 145, 905
RsaI GTAC 4 cut(s) 424, 438, 497, 523
RsaNI GTAC 4 cut(s) 423, 437, 496, 522
RseI CAYNNNNRTG 2 cut(s) 261, 564
SaqAI TTAA 1 cut(s) 1040
Sau3AI GATC 3 cut(s) 229, 766, 790
ScaI AGTACT 1 cut(s) 424
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 4 cut(s) 383, 518, 775, 1036
SexAI ACCWGGT 1 cut(s) 1034
SfaNI GCATC 3 cut(s) 84, 556, 670
SfcI CTRYAG 4 cut(s) 276, 426, 735, 813
SfuI TTCGAA 1 cut(s) 1079
SmiMI CAYNNNNRTG 2 cut(s) 261, 564
Sse9I AATT 3 cut(s) 188, 780, 1096
SseBI AGGCCT 1 cut(s) 897
SsiI CCGC 1 cut(s) 378
SspMI CTAG 1 cut(s) 882
StuI AGGCCT 1 cut(s) 897
StyD4I CCNGG 4 cut(s) 381, 516, 773, 1034
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 2 cut(s) 736, 814
TaqI TCGA 5 cut(s) 413, 646, 751, 798, 1079
TasI AATT 3 cut(s) 188, 780, 1096
TatI WGTACW 1 cut(s) 422
TauI GCSGC 1 cut(s) 381
TfiI GAWTC 4 cut(s) 124, 859, 963, 986
Tru1I TTAA 1 cut(s) 1040
Tru9I TTAA 1 cut(s) 1040
TscAI CASTG 2 cut(s) 268, 739
TseFI GTSAC 1 cut(s) 503
Tsp45I GTSAC 1 cut(s) 503
TspDTI ATGAA 2 cut(s) 76, 857
TspRI CASTG 2 cut(s) 268, 739
XapI RAATTY 1 cut(s) 188
XceI RCATGY 1 cut(s) 1048
XspI CTAG 1 cut(s) 882
ZrmI AGTACT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.