Rmu_sc0029768.1_g000001

Serine racemase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029768.1
OG0007770
Physical Location & Seq
Forward (+)
1 .. 669
669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029768.1_g000001.1.cds

Sequence Viewer

Length: 434 bp
gaggtggcttgatatcaggtgtggctttagctgctaagtccatcaatcctaccattcgagtttttgctgctgaacctgagggagctaatgatgcagctcaatccaaagaagctggaaggataataacattgtctgagaccaacactgtagcagatggacttcgagcttttctgggagatctgacctggccaattgtaagagatcttgtcgatggcattgtaactgtagaggacaaggagataataaatgcaatgaaactctgttacgagattctgaaggttgcagtagaacctagtggagcaataggcctcgcagctgttttatctgatagtttcaagaacaatcctgcatggaaggattgcaccaatataggaatcattctttctggaggtaatgttgatctaggcatcatatgggattcatacacaaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000287 GO:0002237 GO:0003674 GO:0003824 GO:0003941 GO:0005488 GO:0005509 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006090 GO:0006520 GO:0006563 GO:0006564 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0008721 GO:0009058 GO:0009069 GO:0009070 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016594 GO:0016597 GO:0016829 GO:0016840 GO:0016841 GO:0016853 GO:0016854 GO:0016855 GO:0017076 GO:0017144 GO:0018114 GO:0019752 GO:0019842 GO:0019904 GO:0022607 GO:0030165 GO:0030170 GO:0030378 GO:0030554 GO:0031406 GO:0032496 GO:0032553 GO:0032555 GO:0032559 GO:0032787 GO:0033993 GO:0035639 GO:0036094 GO:0036361 GO:0036477 GO:0042165 GO:0042221 GO:0042802 GO:0042803 GO:0042866 GO:0043025 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043207 GO:0043436 GO:0043621 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046416 GO:0046437 GO:0046872 GO:0046983 GO:0047661 GO:0048037 GO:0050662 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051704 GO:0051707 GO:0065003 GO:0070178 GO:0070179 GO:0070279 GO:0071704 GO:0071840 GO:0072330 GO:0097159 GO:0097367 GO:0097458 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00260 ko01100 map00260 map01100
Pfam Domains
Protein Families
PALP

Protein Analysis

143

Amino Acids

15.01

Weight (kDa)

4.55

Isoelectric Point (pI)

22.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 187
AcuI CTGAAG 1 cut(s) 295
AgsI TTSAA 1 cut(s) 336
AjnI CCWGG 1 cut(s) 184
AluBI AGCT 6 cut(s) 31, 85, 97, 112, 166, 316
AluI AGCT 6 cut(s) 31, 85, 97, 112, 166, 316
Alw26I GTCTC 1 cut(s) 130
AoxI GGCC 2 cut(s) 187, 306
ApeKI GCWGC 4 cut(s) 31, 67, 94, 313
AxyI CCTNAGG 1 cut(s) 77
BalI TGGCCA 1 cut(s) 189
BbvI GCAGC 4 cut(s) 18, 54, 106, 325
BccI CCATC 3 cut(s) 49, 148, 205
BciT130I CCWGG 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 130
BfaI CTAG 2 cut(s) 293, 403
BfmI CTRYAG 2 cut(s) 146, 224
BglII AGATCT 2 cut(s) 177, 201
BisI GCNGC 4 cut(s) 32, 68, 95, 314
BlsI GCNGC 4 cut(s) 33, 69, 96, 315
Bme1390I CCNGG 1 cut(s) 186
BmrFI CCNGG 1 cut(s) 186
BmsI GCATC 2 cut(s) 81, 416
BpmI CTGGAG 1 cut(s) 407
BsaI GGTCTC 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 380, 410
Bse21I CCTNAGG 1 cut(s) 77
Bse3DI GCAATG 1 cut(s) 257
BseBI CCWGG 1 cut(s) 186
BseMI GCAATG 1 cut(s) 257
BseMII CTCAG 2 cut(s) 68, 125
BseXI GCAGC 4 cut(s) 18, 54, 106, 325
BshFI GGCC 2 cut(s) 189, 308
BsmAI GTCTC 1 cut(s) 130
BsnI GGCC 2 cut(s) 189, 308
Bso31I GGTCTC 1 cut(s) 130
Bsp143I GATC 3 cut(s) 177, 201, 399
BspANI GGCC 2 cut(s) 189, 308
BspCNI CTCAG 2 cut(s) 69, 126
BspTNI GGTCTC 1 cut(s) 130
BsrDI GCAATG 1 cut(s) 257
BssMI GATC 3 cut(s) 177, 201, 399
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 2 cut(s) 147, 225
BstDEI CTNAG 3 cut(s) 35, 77, 134
BstKTI GATC 3 cut(s) 180, 204, 402
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 3 cut(s) 177, 201, 399
BstMWI GCNNNNNNNGC 2 cut(s) 31, 91
BstNI CCWGG 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 184
BstSFI CTRYAG 2 cut(s) 146, 224
BstV1I GCAGC 4 cut(s) 18, 54, 106, 325
BstX2I RGATCY 2 cut(s) 177, 201
BstYI RGATCY 2 cut(s) 177, 201
Bsu36I CCTNAGG 1 cut(s) 77
BsuRI GGCC 2 cut(s) 189, 308
BtsIMutI CAGTG 1 cut(s) 143
CviAII CATG 1 cut(s) 350
DdeI CTNAG 3 cut(s) 35, 77, 134
DpnI GATC 3 cut(s) 179, 203, 401
DpnII GATC 3 cut(s) 177, 201, 399
EaeI YGGCCR 1 cut(s) 187
Eco147I AGGCCT 1 cut(s) 308
Eco31I GGTCTC 1 cut(s) 130
Eco32I GATATC 1 cut(s) 14
Eco57I CTGAAG 1 cut(s) 295
Eco81I CCTNAGG 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 184
EcoRV GATATC 1 cut(s) 14
FaeI CATG 1 cut(s) 353
FaiI YATR 5 cut(s) 351, 370, 412, 414, 423
FatI CATG 1 cut(s) 349
FauNDI CATATG 1 cut(s) 412
Fnu4HI GCNGC 4 cut(s) 32, 68, 95, 314
Fsp4HI GCNGC 4 cut(s) 32, 68, 95, 314
FspBI CTAG 2 cut(s) 293, 403
GluI GCNGC 4 cut(s) 32, 68, 95, 314
GsuI CTGGAG 1 cut(s) 407
HaeIII GGCC 2 cut(s) 189, 308
Hin1II CATG 1 cut(s) 353
HinfI GANTC 3 cut(s) 270, 374, 418
Hpy188I TCNGA 4 cut(s) 135, 182, 275, 327
Hpy188III TCNNGA 2 cut(s) 336, 386
HpyAV CCTTC 3 cut(s) 110, 270, 348
HpyCH4III ACNGT 2 cut(s) 147, 225
HpyCH4V TGCA 5 cut(s) 94, 250, 283, 349, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 91
HpyF3I CTNAG 3 cut(s) 35, 77, 134
Hsp92II CATG 1 cut(s) 353
Kzo9I GATC 3 cut(s) 177, 201, 399
LmnI GCTCC 2 cut(s) 82, 298
LpnPI CCDG 8 cut(s) 2, 89, 98, 157, 171, 198, 359, 371
Lsp1109I GCAGC 4 cut(s) 18, 54, 106, 325
LweI GCATC 2 cut(s) 81, 416
MaeI CTAG 2 cut(s) 293, 403
MaeIII GTNAC 2 cut(s) 219, 262
MalI GATC 3 cut(s) 179, 203, 401
MboI GATC 3 cut(s) 177, 201, 399
MfeI CAATTG 1 cut(s) 191
MflI RGATCY 2 cut(s) 177, 201
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 1 cut(s) 191
MluNI TGGCCA 1 cut(s) 189
MnlI CCTC 4 cut(s) 72, 222, 319, 382
Mox20I TGGCCA 1 cut(s) 189
MscI TGGCCA 1 cut(s) 189
Msp20I TGGCCA 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 316
MspR9I CCNGG 1 cut(s) 186
MunI CAATTG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 31, 91
NdeI CATATG 1 cut(s) 412
NdeII GATC 3 cut(s) 177, 201, 399
NlaIII CATG 1 cut(s) 353
PceI AGGCCT 1 cut(s) 308
PfeI GAWTC 3 cut(s) 270, 374, 418
PkrI GCNGC 4 cut(s) 33, 69, 96, 315
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PsuI RGATCY 2 cut(s) 177, 201
PvuII CAGCTG 1 cut(s) 316
SatI GCNGC 4 cut(s) 32, 68, 95, 314
Sau3AI GATC 3 cut(s) 177, 201, 399
ScrFI CCNGG 1 cut(s) 186
SfaNI GCATC 2 cut(s) 81, 416
SfcI CTRYAG 2 cut(s) 146, 224
Sse9I AATT 1 cut(s) 191
SseBI AGGCCT 1 cut(s) 308
SspMI CTAG 2 cut(s) 293, 403
StuI AGGCCT 1 cut(s) 308
StyD4I CCNGG 1 cut(s) 184
TaaI ACNGT 2 cut(s) 147, 225
TaqI TCGA 3 cut(s) 57, 162, 209
TasI AATT 1 cut(s) 191
TfiI GAWTC 3 cut(s) 270, 374, 418
TscAI CASTG 1 cut(s) 150
TseI GCWGC 4 cut(s) 31, 67, 94, 313
TspDTI ATGAA 2 cut(s) 268, 410
TspRI CASTG 1 cut(s) 150
XspI CTAG 2 cut(s) 293, 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.