RchiOBHm_Chr7g0198231

Serine racemase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0007770
Physical Location & Seq
Forward (+)
16072150 .. 16076306
4157 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17736

Sequence Viewer

Length: 1092 bp
ATGAGCTTTAAAACTGGGAAAATAGCAGAGCAGACCAATTTATCAGCTGGGATATTTGGGCTCTTGGATTGTACTATAGTCTTAAAGATGGAAGCAGAGAGTCAAATGAGGGAGATAAAATATGCTGCTGATATTTCGTCTATAAAGGAAGCACAGGCACGCATCAAGCCGTTCATACACGAAACTCCAGTCCTGTCCTCTGAAACTTTGAATCTTCTTTCAGGAAGACAGCTGTTTTTCAAATGTGAATGTTTCCAAAAGGGTGGCGCTTTCAAATTCAGAGGCGCTTGCAATGCCGTGTTTTCACTTGATGATGATCAGGCTGCTAAGGGGGTTGTAACACATAGCAGTGGTAACCATGCTGCAGCATTGTCTTTCGCTGCAAAACTACGGGGTATTCCTGCATATATAGTTATACCGAAAAATGCTCCAAAATGCAAAGTTGAGAATGTCGTGCGTTACGGTGGCCAGGTTATCTGGAGTGAGCCAACAATGCAGTCGAGGGAAAGTACTGCAGCCAAGGTACTGCAAGAAACTGGCGCAGTTCTTCTACATCCCTACAATGACAGGCGCATAATAAGTGGCCAGGGTACCATATCATTGGAGTTACTGGAGCAACAAGTTCCACATTTAGATGCTATTGTAGTTCCCATAAGTGGAGGTGGCTTGATATCAGGTGTGGCTTTAGCTGCTAAGTCCATCAATCCTGCCATTCGAGTTTTTGCTGCTGAACCTGAGGGAGCTAATGATGCAGCTCAATCCAAAGAAGCTGGAAGGATAATAACATTGTCTGAGACCAACACTGTAGCAGATGGACTTCGAGCTTTTCTGGGAGATCTGACCTGGCCAATTGTAAGAGATCTTGTCGATGGCATTGTAACTGTAGAGGACAAGGAGATAATAAATGCAATGAAACTCTGTTACGAGATTCTGAAGGTTGCAGTAGAACCTAGTGGAGCAATAGGCCTCGCAGCTGTTTTATCTGATAGTTTCAAGAACAATCCTGCATGGAAGGATTGCACCAATATAGGAATCATTCTTTCTGGAGGTAATGTTGATCTAGGCATCATATGGGATTCATACACAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000287 GO:0002237 GO:0003674 GO:0003824 GO:0003941 GO:0005488 GO:0005509 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006090 GO:0006520 GO:0006563 GO:0006564 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0008721 GO:0009058 GO:0009069 GO:0009070 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016594 GO:0016597 GO:0016829 GO:0016840 GO:0016841 GO:0016853 GO:0016854 GO:0016855 GO:0017076 GO:0017144 GO:0018114 GO:0019752 GO:0019842 GO:0019904 GO:0022607 GO:0030165 GO:0030170 GO:0030378 GO:0030554 GO:0031406 GO:0032496 GO:0032553 GO:0032555 GO:0032559 GO:0032787 GO:0033993 GO:0035639 GO:0036094 GO:0036361 GO:0036477 GO:0042165 GO:0042221 GO:0042802 GO:0042803 GO:0042866 GO:0043025 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043207 GO:0043436 GO:0043621 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046416 GO:0046437 GO:0046872 GO:0046983 GO:0047661 GO:0048037 GO:0050662 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051704 GO:0051707 GO:0065003 GO:0070178 GO:0070179 GO:0070279 GO:0071704 GO:0071840 GO:0072330 GO:0097159 GO:0097367 GO:0097458 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00260 ko01100 map00260 map01100
Pfam Domains
Protein Families
PALP

Protein Analysis

363

Amino Acids

38.86

Weight (kDa)

6.03

Isoelectric Point (pI)

28.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 56 - 348 2.3e-76 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 590
AccB1I GGYRCC 1 cut(s) 590
AcoI YGGCCR 3 cut(s) 466, 583, 845
AcsI RAATTY 1 cut(s) 275
AcuI CTGAAG 1 cut(s) 953
AfaI GTAC 4 cut(s) 73, 511, 525, 592
AfiI CCNNNNNNNGG 1 cut(s) 656
AgsI TTSAA 4 cut(s) 211, 241, 274, 994
AjnI CCWGG 3 cut(s) 468, 585, 842
AluBI AGCT 9 cut(s) 6, 47, 232, 689, 743, 755, 770, 824, 974
AluI AGCT 9 cut(s) 6, 47, 232, 689, 743, 755, 770, 824, 974
Alw26I GTCTC 1 cut(s) 788
AoxI GGCC 4 cut(s) 466, 583, 845, 964
ApoI RAATTY 1 cut(s) 275
ArsI GACNNNNNNTTYG 2 cut(s) 174, 206
Asp718I GGTACC 1 cut(s) 590
AspLEI GCGC 4 cut(s) 269, 287, 542, 573
AxyI CCTNAGG 1 cut(s) 735
BalI TGGCCA 3 cut(s) 468, 585, 847
BanI GGYRCC 1 cut(s) 590
BanII GRGCYC 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 232
BccI CCATC 4 cut(s) 82, 707, 806, 863
BceAI ACGGC 2 cut(s) 154, 281
BciT130I CCWGG 3 cut(s) 470, 587, 844
BclI TGATCA 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 788
BfaI CTAG 2 cut(s) 951, 1061
BfmI CTRYAG 5 cut(s) 75, 363, 513, 804, 882
BfoI RGCGCY 2 cut(s) 270, 288
BglII AGATCT 2 cut(s) 835, 859
BmcAI AGTACT 1 cut(s) 511
Bme1390I CCNGG 3 cut(s) 470, 587, 844
BmiI GGNNCC 1 cut(s) 592
BmrFI CCNGG 3 cut(s) 470, 587, 844
BmrI ACTGGG 1 cut(s) 24
BmsI GCATC 4 cut(s) 171, 625, 739, 1074
BmuI ACTGGG 1 cut(s) 24
BpiI GAAGAC 1 cut(s) 232
BpmI CTGGAG 4 cut(s) 171, 499, 632, 1065
Bpu10I CCTNAGC 1 cut(s) 327
BsaBI GATNNNNATC 1 cut(s) 315
BsaI GGTCTC 1 cut(s) 788
BsaJI CCNNGG 2 cut(s) 519, 586
BsaXI ACNNNNNCTCC 2 cut(s) 1038, 1068
Bsc4I CCNNNNNNNGG 1 cut(s) 656
Bse1I ACTGG 4 cut(s) 19, 188, 541, 615
Bse21I CCTNAGG 1 cut(s) 735
Bse3DI GCAATG 2 cut(s) 298, 915
Bse8I GATNNNNATC 1 cut(s) 315
BseBI CCWGG 3 cut(s) 470, 587, 844
BseDI CCNNGG 2 cut(s) 519, 586
BseGI GGATG 1 cut(s) 553
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 1 cut(s) 656
BseMI GCAATG 2 cut(s) 298, 915
BseMII CTCAG 2 cut(s) 726, 783
BseNI ACTGG 4 cut(s) 19, 188, 541, 615
BseYI CCCAGC 1 cut(s) 47
BshFI GGCC 4 cut(s) 468, 585, 847, 966
BshNI GGYRCC 1 cut(s) 590
BslI CCNNNNNNNGG 1 cut(s) 656
BsmAI GTCTC 1 cut(s) 788
BsnI GGCC 4 cut(s) 468, 585, 847, 966
Bso31I GGTCTC 1 cut(s) 788
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 4 cut(s) 316, 835, 859, 1057
BspANI GGCC 4 cut(s) 468, 585, 847, 966
BspCNI CTCAG 2 cut(s) 727, 784
BspLI GGNNCC 1 cut(s) 592
BspMAI CTGCAG 2 cut(s) 367, 517
BspT107I GGYRCC 1 cut(s) 590
BspTNI GGTCTC 1 cut(s) 788
BsrDI GCAATG 2 cut(s) 298, 915
BsrI ACTGG 4 cut(s) 19, 188, 541, 615
BssECI CCNNGG 2 cut(s) 519, 586
BssMI GATC 4 cut(s) 316, 835, 859, 1057
BssT1I CCWWGG 1 cut(s) 519
Bst2UI CCWGG 3 cut(s) 470, 587, 844
Bst4CI ACNGT 3 cut(s) 464, 805, 883
BstC8I GCNNGC 2 cut(s) 160, 289
BstDEI CTNAG 4 cut(s) 327, 693, 735, 792
BstEII GGTNACC 1 cut(s) 353
BstF5I GGATG 1 cut(s) 553
BstH2I RGCGCY 2 cut(s) 270, 288
BstHHI GCGC 4 cut(s) 269, 287, 542, 573
BstKTI GATC 4 cut(s) 319, 838, 862, 1060
BstMAI GTCTC 1 cut(s) 788
BstMBI GATC 4 cut(s) 316, 835, 859, 1057
BstMWI GCNNNNNNNGC 4 cut(s) 293, 493, 689, 749
BstNI CCWGG 3 cut(s) 470, 587, 844
BstPI GGTNACC 1 cut(s) 353
BstSCI CCNGG 3 cut(s) 468, 585, 842
BstSFI CTRYAG 5 cut(s) 75, 363, 513, 804, 882
BstV2I GAAGAC 1 cut(s) 232
BstX2I RGATCY 2 cut(s) 835, 859
BstXI CCANNNNNNTGG 2 cut(s) 263, 601
BstYI RGATCY 2 cut(s) 835, 859
Bsu36I CCTNAGG 1 cut(s) 735
BsuRI GGCC 4 cut(s) 468, 585, 847, 966
BtsCI GGATG 1 cut(s) 553
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 2 cut(s) 355, 801
Cac8I GCNNGC 2 cut(s) 160, 289
CfoI GCGC 4 cut(s) 269, 287, 542, 573
Csp6I GTAC 4 cut(s) 72, 510, 524, 591
CviAII CATG 2 cut(s) 359, 1008
CviQI GTAC 4 cut(s) 72, 510, 524, 591
DdeI CTNAG 4 cut(s) 327, 693, 735, 792
DpnI GATC 4 cut(s) 318, 837, 861, 1059
DpnII GATC 4 cut(s) 316, 835, 859, 1057
DraI TTTAAA 1 cut(s) 10
EaeI YGGCCR 3 cut(s) 466, 583, 845
Eco130I CCWWGG 1 cut(s) 519
Eco147I AGGCCT 1 cut(s) 966
Eco24I GRGCYC 1 cut(s) 63
Eco31I GGTCTC 1 cut(s) 788
Eco32I GATATC 1 cut(s) 672
Eco57I CTGAAG 1 cut(s) 953
Eco81I CCTNAGG 1 cut(s) 735
Eco91I GGTNACC 1 cut(s) 353
EcoO65I GGTNACC 1 cut(s) 353
EcoRII CCWGG 3 cut(s) 468, 585, 842
EcoRV GATATC 1 cut(s) 672
EcoT14I CCWWGG 1 cut(s) 519
EcoT38I GRGCYC 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 519
FaeI CATG 2 cut(s) 362, 1011
FatI CATG 2 cut(s) 358, 1007
FauNDI CATATG 1 cut(s) 1070
FbaI TGATCA 1 cut(s) 316
FokI GGATG 1 cut(s) 540
FriOI GRGCYC 1 cut(s) 63
FspBI CTAG 2 cut(s) 951, 1061
GlaI GCGC 4 cut(s) 268, 286, 541, 572
GsaI CCCAGC 1 cut(s) 51
GsuI CTGGAG 4 cut(s) 171, 499, 632, 1065
HaeII RGCGCY 2 cut(s) 270, 288
HaeIII GGCC 4 cut(s) 468, 585, 847, 966
HhaI GCGC 4 cut(s) 269, 287, 542, 573
Hin1II CATG 2 cut(s) 362, 1011
Hin6I GCGC 4 cut(s) 267, 285, 540, 571
HinP1I GCGC 4 cut(s) 267, 285, 540, 571
HinfI GANTC 5 cut(s) 100, 211, 928, 1032, 1076
Hpy188I TCNGA 6 cut(s) 202, 281, 793, 840, 933, 985
Hpy188III TCNNGA 4 cut(s) 222, 478, 994, 1044
HpyAV CCTTC 3 cut(s) 768, 928, 1006
HpyCH4III ACNGT 3 cut(s) 464, 805, 883
HpyF10VI GCNNNNNNNGC 4 cut(s) 293, 493, 689, 749
HpyF3I CTNAG 4 cut(s) 327, 693, 735, 792
Hsp92II CATG 2 cut(s) 362, 1011
HspAI GCGC 4 cut(s) 267, 285, 540, 571
KpnI GGTACC 1 cut(s) 594
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 4 cut(s) 316, 835, 859, 1057
LmnI GCTCC 4 cut(s) 433, 613, 740, 956
LweI GCATC 4 cut(s) 171, 625, 739, 1074
MaeI CTAG 2 cut(s) 951, 1061
MaeIII GTNAC 6 cut(s) 337, 353, 458, 606, 877, 920
MalI GATC 4 cut(s) 318, 837, 861, 1059
MboI GATC 4 cut(s) 316, 835, 859, 1057
MboII GAAGA 3 cut(s) 206, 237, 539
MfeI CAATTG 1 cut(s) 849
MflI RGATCY 2 cut(s) 835, 859
MhlI GDGCHC 1 cut(s) 63
MlsI TGGCCA 3 cut(s) 468, 585, 847
MluCI AATT 3 cut(s) 37, 275, 849
MluNI TGGCCA 3 cut(s) 468, 585, 847
MlyI GAGTC 1 cut(s) 109
MnlI CCTC 9 cut(s) 102, 208, 275, 495, 653, 730, 880, 977, 1040
Mox20I TGGCCA 3 cut(s) 468, 585, 847
MscI TGGCCA 3 cut(s) 468, 585, 847
MseI TTAA 2 cut(s) 9, 83
MslI CAYNNNNRTG 2 cut(s) 348, 633
Msp20I TGGCCA 3 cut(s) 468, 585, 847
MspA1I CMGCKG 3 cut(s) 47, 232, 974
MspR9I CCNGG 3 cut(s) 470, 587, 844
MunI CAATTG 1 cut(s) 849
MvaI CCWGG 3 cut(s) 470, 587, 844
MwoI GCNNNNNNNGC 4 cut(s) 293, 493, 689, 749
NdeI CATATG 1 cut(s) 1070
NdeII GATC 4 cut(s) 316, 835, 859, 1057
NlaIII CATG 2 cut(s) 362, 1011
NlaIV GGNNCC 1 cut(s) 592
PceI AGGCCT 1 cut(s) 966
PfeI GAWTC 4 cut(s) 211, 928, 1032, 1076
PleI GAGTC 1 cut(s) 108
PpsI GAGTC 1 cut(s) 108
Psp6I CCWGG 3 cut(s) 468, 585, 842
PspEI GGTNACC 1 cut(s) 353
PspFI CCCAGC 1 cut(s) 47
PspGI CCWGG 3 cut(s) 468, 585, 842
PspN4I GGNNCC 1 cut(s) 592
PstI CTGCAG 2 cut(s) 367, 517
PsuI RGATCY 2 cut(s) 835, 859
PvuII CAGCTG 3 cut(s) 47, 232, 974
RsaI GTAC 4 cut(s) 73, 511, 525, 592
RsaNI GTAC 4 cut(s) 72, 510, 524, 591
RseI CAYNNNNRTG 2 cut(s) 348, 633
SaqAI TTAA 2 cut(s) 9, 83
Sau3AI GATC 4 cut(s) 316, 835, 859, 1057
ScaI AGTACT 1 cut(s) 511
SchI GAGTC 1 cut(s) 109
ScrFI CCNGG 3 cut(s) 470, 587, 844
SduI GDGCHC 1 cut(s) 63
SfaNI GCATC 4 cut(s) 171, 625, 739, 1074
SfcI CTRYAG 5 cut(s) 75, 363, 513, 804, 882
SmiMI CAYNNNNRTG 2 cut(s) 348, 633
Sse9I AATT 3 cut(s) 37, 275, 849
SseBI AGGCCT 1 cut(s) 966
SspMI CTAG 2 cut(s) 951, 1061
StuI AGGCCT 1 cut(s) 966
StyD4I CCNGG 3 cut(s) 468, 585, 842
StyI CCWWGG 1 cut(s) 519
TaaI ACNGT 3 cut(s) 464, 805, 883
TaqI TCGA 4 cut(s) 500, 715, 820, 867
TasI AATT 3 cut(s) 37, 275, 849
TatI WGTACW 2 cut(s) 71, 509
TfiI GAWTC 4 cut(s) 211, 928, 1032, 1076
Tru1I TTAA 2 cut(s) 9, 83
Tru9I TTAA 2 cut(s) 9, 83
TscAI CASTG 2 cut(s) 355, 808
TspDTI ATGAA 3 cut(s) 163, 926, 1068
TspRI CASTG 2 cut(s) 355, 808
XapI RAATTY 1 cut(s) 275
XspI CTAG 2 cut(s) 951, 1061
ZrmI AGTACT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.