RLG00000003883

Serine racemase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0007770
Physical Location & Seq
Reverse (-)
53905128 .. 53906483
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003883

Sequence Viewer

Length: 600 bp
ATGCAGTCGAGGGAAAGTACTGCAGCCAAGGTACTGCAAGAAACTGGTGCAGTTCTTCTACATCCCTACAATGACAGGCGCATAATAAGTGGCCAGGGTACCATATCATTGGAGTTACTGGAGCAACAAGTTCCACATTTAGATGCTATTGTAGTTCCCATAAGTGGAGGTGGCTTGATATCAGGTGTGGCTTTAGCTGCTAAGTCCATCAATCCTGCCATTCGAGTTTTTGCTGCTGAACCTGAGGGAGCTAATGATGCAGCTCAATCCAAAGAAGCTGGAAGGATAATAACATTGTCTGAGACCAACACTGTAGCAGATGGACTTCGAGCTTTTCTGGGAGATCTGACCTGGCCAATAGTAAGAGATCTTGTCGATGGCATTATAACTGTAGAGGACAAGGAGATAATAAATGCAATGAAACTCTGTTACGAGATTCTGAAGGTTGCAGTAGAACCTAGTGGAGCAATAGGCCTCGCAGCTGTTTTATCTGATAGTTTCAAGAACAATCCTGCTTGGAAGGATTGCACCAATATAGGAATCATTCTTTCTGGAGGTAATGTTGATCTAGGCATCATATGGGATTCATACACAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000287 GO:0002237 GO:0003674 GO:0003824 GO:0003941 GO:0005488 GO:0005509 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006090 GO:0006520 GO:0006563 GO:0006564 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0008721 GO:0009058 GO:0009069 GO:0009070 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016594 GO:0016597 GO:0016829 GO:0016840 GO:0016841 GO:0016853 GO:0016854 GO:0016855 GO:0017076 GO:0017144 GO:0018114 GO:0019752 GO:0019842 GO:0019904 GO:0022607 GO:0030165 GO:0030170 GO:0030378 GO:0030554 GO:0031406 GO:0032496 GO:0032553 GO:0032555 GO:0032559 GO:0032787 GO:0033993 GO:0035639 GO:0036094 GO:0036361 GO:0036477 GO:0042165 GO:0042221 GO:0042802 GO:0042803 GO:0042866 GO:0043025 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043207 GO:0043436 GO:0043621 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046416 GO:0046437 GO:0046872 GO:0046983 GO:0047661 GO:0048037 GO:0050662 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051704 GO:0051707 GO:0065003 GO:0070178 GO:0070179 GO:0070279 GO:0071704 GO:0071840 GO:0072330 GO:0097159 GO:0097367 GO:0097458 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00260 ko01100 map00260 map01100
Pfam Domains
Protein Families
PALP

Protein Analysis

200

Amino Acids

21.06

Weight (kDa)

4.74

Isoelectric Point (pI)

31.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 3 - 185 1.5e-41 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 386
Acc65I GGTACC 1 cut(s) 98
AccB1I GGYRCC 1 cut(s) 98
AcoI YGGCCR 2 cut(s) 91, 353
AcuI CTGAAG 1 cut(s) 461
AfaI GTAC 3 cut(s) 19, 33, 100
AfiI CCNNNNNNNGG 1 cut(s) 164
AgsI TTSAA 1 cut(s) 502
AjnI CCWGG 2 cut(s) 93, 350
AluBI AGCT 6 cut(s) 197, 251, 263, 278, 332, 482
AluI AGCT 6 cut(s) 197, 251, 263, 278, 332, 482
Alw26I GTCTC 1 cut(s) 296
AoxI GGCC 3 cut(s) 91, 353, 472
ApeKI GCWGC 5 cut(s) 23, 197, 233, 260, 479
Asp718I GGTACC 1 cut(s) 98
AspLEI GCGC 1 cut(s) 81
AxyI CCTNAGG 1 cut(s) 243
BalI TGGCCA 2 cut(s) 93, 355
BanI GGYRCC 1 cut(s) 98
BbvI GCAGC 5 cut(s) 35, 184, 220, 272, 491
BccI CCATC 3 cut(s) 215, 314, 371
BciT130I CCWGG 2 cut(s) 95, 352
BcoDI GTCTC 1 cut(s) 296
BfaI CTAG 2 cut(s) 459, 569
BfmI CTRYAG 3 cut(s) 21, 312, 390
BglII AGATCT 2 cut(s) 343, 367
BisI GCNGC 5 cut(s) 24, 198, 234, 261, 480
BlsI GCNGC 5 cut(s) 25, 199, 235, 262, 481
BmcAI AGTACT 1 cut(s) 19
Bme1390I CCNGG 2 cut(s) 95, 352
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 2 cut(s) 95, 352
BmsI GCATC 3 cut(s) 133, 247, 582
BpmI CTGGAG 2 cut(s) 140, 573
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 27, 94
BsaXI ACNNNNNCTCC 2 cut(s) 546, 576
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse1I ACTGG 2 cut(s) 49, 123
Bse21I CCTNAGG 1 cut(s) 243
Bse3DI GCAATG 1 cut(s) 423
BseBI CCWGG 2 cut(s) 95, 352
BseDI CCNNGG 2 cut(s) 27, 94
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMI GCAATG 1 cut(s) 423
BseMII CTCAG 2 cut(s) 234, 291
BseNI ACTGG 2 cut(s) 49, 123
BseXI GCAGC 5 cut(s) 35, 184, 220, 272, 491
BsgI GTGCAG 1 cut(s) 69
BshFI GGCC 3 cut(s) 93, 355, 474
BshNI GGYRCC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 164
BsmAI GTCTC 1 cut(s) 296
BsnI GGCC 3 cut(s) 93, 355, 474
Bso31I GGTCTC 1 cut(s) 296
Bsp143I GATC 3 cut(s) 343, 367, 565
BspANI GGCC 3 cut(s) 93, 355, 474
BspCNI CTCAG 2 cut(s) 235, 292
BspLI GGNNCC 1 cut(s) 100
BspMAI CTGCAG 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 423
BsrI ACTGG 2 cut(s) 49, 123
BssECI CCNNGG 2 cut(s) 27, 94
BssMI GATC 3 cut(s) 343, 367, 565
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 2 cut(s) 95, 352
Bst4CI ACNGT 2 cut(s) 313, 391
BstDEI CTNAG 3 cut(s) 201, 243, 300
BstF5I GGATG 1 cut(s) 61
BstHHI GCGC 1 cut(s) 81
BstKTI GATC 3 cut(s) 346, 370, 568
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 3 cut(s) 343, 367, 565
BstMWI GCNNNNNNNGC 2 cut(s) 197, 257
BstNI CCWGG 2 cut(s) 95, 352
BstSCI CCNGG 2 cut(s) 93, 350
BstSFI CTRYAG 3 cut(s) 21, 312, 390
BstV1I GCAGC 5 cut(s) 35, 184, 220, 272, 491
BstX2I RGATCY 2 cut(s) 343, 367
BstXI CCANNNNNNTGG 1 cut(s) 109
BstYI RGATCY 2 cut(s) 343, 367
Bsu36I CCTNAGG 1 cut(s) 243
BsuRI GGCC 3 cut(s) 93, 355, 474
BtsCI GGATG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 309
CfoI GCGC 1 cut(s) 81
Csp6I GTAC 3 cut(s) 18, 32, 99
CviQI GTAC 3 cut(s) 18, 32, 99
DdeI CTNAG 3 cut(s) 201, 243, 300
DpnI GATC 3 cut(s) 345, 369, 567
DpnII GATC 3 cut(s) 343, 367, 565
EaeI YGGCCR 2 cut(s) 91, 353
Eco130I CCWWGG 1 cut(s) 27
Eco147I AGGCCT 1 cut(s) 474
Eco31I GGTCTC 1 cut(s) 296
Eco32I GATATC 1 cut(s) 180
Eco57I CTGAAG 1 cut(s) 461
Eco81I CCTNAGG 1 cut(s) 243
EcoRII CCWGG 2 cut(s) 93, 350
EcoRV GATATC 1 cut(s) 180
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaiI YATR 8 cut(s) 83, 104, 161, 386, 536, 578, 580, 589
FauNDI CATATG 1 cut(s) 578
Fnu4HI GCNGC 5 cut(s) 24, 198, 234, 261, 480
FokI GGATG 1 cut(s) 48
Fsp4HI GCNGC 5 cut(s) 24, 198, 234, 261, 480
FspBI CTAG 2 cut(s) 459, 569
GlaI GCGC 1 cut(s) 80
GluI GCNGC 5 cut(s) 24, 198, 234, 261, 480
GsuI CTGGAG 2 cut(s) 140, 573
HaeIII GGCC 3 cut(s) 93, 355, 474
HhaI GCGC 1 cut(s) 81
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HinfI GANTC 3 cut(s) 436, 540, 584
Hpy188I TCNGA 4 cut(s) 301, 348, 441, 493
Hpy188III TCNNGA 2 cut(s) 502, 552
HpyAV CCTTC 3 cut(s) 276, 436, 514
HpyCH4III ACNGT 2 cut(s) 313, 391
HpyCH4V TGCA 8 cut(s) 4, 23, 37, 50, 260, 416, 449, 528
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 257
HpyF3I CTNAG 3 cut(s) 201, 243, 300
HspAI GCGC 1 cut(s) 79
KpnI GGTACC 1 cut(s) 102
Kzo9I GATC 3 cut(s) 343, 367, 565
LmnI GCTCC 3 cut(s) 121, 248, 464
Lsp1109I GCAGC 5 cut(s) 35, 184, 220, 272, 491
LweI GCATC 3 cut(s) 133, 247, 582
MaeI CTAG 2 cut(s) 459, 569
MaeIII GTNAC 2 cut(s) 114, 428
MalI GATC 3 cut(s) 345, 369, 567
MboI GATC 3 cut(s) 343, 367, 565
MboII GAAGA 1 cut(s) 47
MflI RGATCY 2 cut(s) 343, 367
MlsI TGGCCA 2 cut(s) 93, 355
MluNI TGGCCA 2 cut(s) 93, 355
MnlI CCTC 6 cut(s) 3, 161, 238, 388, 485, 548
Mox20I TGGCCA 2 cut(s) 93, 355
MscI TGGCCA 2 cut(s) 93, 355
MslI CAYNNNNRTG 1 cut(s) 141
Msp20I TGGCCA 2 cut(s) 93, 355
MspA1I CMGCKG 1 cut(s) 482
MspR9I CCNGG 2 cut(s) 95, 352
MvaI CCWGG 2 cut(s) 95, 352
MwoI GCNNNNNNNGC 2 cut(s) 197, 257
NdeI CATATG 1 cut(s) 578
NdeII GATC 3 cut(s) 343, 367, 565
NlaIV GGNNCC 1 cut(s) 100
PceI AGGCCT 1 cut(s) 474
PfeI GAWTC 3 cut(s) 436, 540, 584
PkrI GCNGC 5 cut(s) 25, 199, 235, 262, 481
PsiI TTATAA 1 cut(s) 386
Psp6I CCWGG 2 cut(s) 93, 350
PspGI CCWGG 2 cut(s) 93, 350
PspN4I GGNNCC 1 cut(s) 100
PstI CTGCAG 1 cut(s) 25
PsuI RGATCY 2 cut(s) 343, 367
PvuII CAGCTG 1 cut(s) 482
RsaI GTAC 3 cut(s) 19, 33, 100
RsaNI GTAC 3 cut(s) 18, 32, 99
RseI CAYNNNNRTG 1 cut(s) 141
SatI GCNGC 5 cut(s) 24, 198, 234, 261, 480
Sau3AI GATC 3 cut(s) 343, 367, 565
ScaI AGTACT 1 cut(s) 19
ScrFI CCNGG 2 cut(s) 95, 352
SfaNI GCATC 3 cut(s) 133, 247, 582
SfcI CTRYAG 3 cut(s) 21, 312, 390
SmiMI CAYNNNNRTG 1 cut(s) 141
SseBI AGGCCT 1 cut(s) 474
SspMI CTAG 2 cut(s) 459, 569
StuI AGGCCT 1 cut(s) 474
StyD4I CCNGG 2 cut(s) 93, 350
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 2 cut(s) 313, 391
TaqI TCGA 4 cut(s) 8, 223, 328, 375
TatI WGTACW 1 cut(s) 17
TfiI GAWTC 3 cut(s) 436, 540, 584
TscAI CASTG 1 cut(s) 316
TseI GCWGC 5 cut(s) 23, 197, 233, 260, 479
TspDTI ATGAA 2 cut(s) 434, 576
TspRI CASTG 1 cut(s) 316
XspI CTAG 2 cut(s) 459, 569
ZrmI AGTACT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.