Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029767.1

Orthogroup ID

OG0007770

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2449

Gene Structure 2449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029767.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 961 bp

atggaagcagagagtcaaatgagggagataaaatatgctgctgatatttcgtctataaaggaagcacaggcacgcatcaagccgttcatacacgaaactccagtcctgtcctctgaaactttgaatcttctttcaggaagacagctgtttttcaaatgtgaatgtttccaaaagggtggcgctttcaaattcagaggcgcttgcaatgccgtgttttcacttgatgatgatcaggctgctaagggggttgtaacacatagcagtggtaaccatgctgcagcattgtctttggctgcaaaactacggggtattcctgcatatatagttataccgaaaaatgctccaaaatgcaaagttgagaatgtcgtgcgttacggtggccaggttatctggagtgagccaacaatgcagtcgagggaaagtactgcagccaaggtactgcaagaaactggcgcagttcttctacatccctacaatgacaggcgcataataagtggccagggtaccatatcattggagttactggagcaacaagttccacatttagatgctattgtagttcccataagtggaggtggcttgatatcaggtgtggctttagctgctaagtccatcaatcctgccattcgagtttttgctgctgaacctgagggagctaatgatgcagctcaatccaaagaagctggaaggataataacattgtctgagaccaacactgtagcagatggacttcgagcttttctgggagatctgacctggccaattgtaagagatcttgtcgatggcattgtaactgtagaggacaaggagataataaatgcaatgaaactctgttacgagattctgaaggttgcagtagaacctagtggagcaataggcctcgcagctgttttatctgatagtttcaagaacaatcctgcatggaaggattgcaccaatataggaatcattctttctggag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0002237 GO:0003674 GO:0003824 GO:0003941 GO:0005488 GO:0005509 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006090 GO:0006520 GO:0006563 GO:0006564 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0008721 GO:0009058 GO:0009069 GO:0009070 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016594 GO:0016597 GO:0016829 GO:0016840 GO:0016841 GO:0016853 GO:0016854 GO:0016855 GO:0017076 GO:0017144 GO:0018114 GO:0019752 GO:0019842 GO:0019904 GO:0022607 GO:0030165 GO:0030170 GO:0030378 GO:0030554 GO:0031406 GO:0032496 GO:0032553 GO:0032555 GO:0032559 GO:0032787 GO:0033993 GO:0035639 GO:0036094 GO:0036361 GO:0036477 GO:0042165 GO:0042221 GO:0042802 GO:0042803 GO:0042866 GO:0043025 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043207 GO:0043436 GO:0043621 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046416 GO:0046437 GO:0046872 GO:0046983 GO:0047661 GO:0048037 GO:0050662 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051704 GO:0051707 GO:0065003 GO:0070178 GO:0070179 GO:0070279 GO:0071704 GO:0071840 GO:0072330 GO:0097159 GO:0097367 GO:0097458 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 map00260 map01100

Pfam Domains

Protein Families

PALP

Protein Analysis

320

Amino Acids

34.18

Weight (kDa)

6.02

Isoelectric Point (pI)

30.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11640
fragaria_vesca	FvH4_5g02070 FvH4_5g02070
malus_domestica	MD06G1079200.v1.1
prunus_persica	Prupe.5G097600_v2.0.a1 Prupe.5G097600_v2.0.a1 Prupe.5G097600_v2.0.a1 Prupe.5G097600_v2.0.a1 Prupe.5G097600_v2.0.a1 Prupe.5G097600_v2.0.a1 Prupe.5G097600_v2.0.a1 Prupe.5G097800_v2.0.a1
pyrus_communis	pycom06g07630
rosa_chinensis	RchiOBHm_Chr7g0198231
rosa_laevigata	RLG00000003883
rosa_multiflora	Rmu_sc0029767.1_g000001 Rmu_sc0029768.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257920
rosa_rugosa	Rorug07G0046000
rosa_samantha	Rh7AG169600 Rh7BG172800 Rh7CG179300 Rh7DG172100
rosa_wichuraiana	Rw7G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	503
AccB1I	GGYRCC	1 cut(s)	503
AcoI	YGGCCR	3 cut(s)	379, 496, 758
AcsI	RAATTY	1 cut(s)	188
AcuI	CTGAAG	1 cut(s)	866
AfaI	GTAC	3 cut(s)	424, 438, 505
AfiI	CCNNNNNNNGG	1 cut(s)	569
AgsI	TTSAA	4 cut(s)	124, 154, 187, 907
AjnI	CCWGG	3 cut(s)	381, 498, 755
AluBI	AGCT	7 cut(s)	145, 602, 656, 668, 683, 737, 887
AluI	AGCT	7 cut(s)	145, 602, 656, 668, 683, 737, 887
Alw26I	GTCTC	1 cut(s)	701
AoxI	GGCC	4 cut(s)	379, 496, 758, 877
ApoI	RAATTY	1 cut(s)	188
ArsI	GACNNNNNNTTYG	2 cut(s)	87, 119
Asp718I	GGTACC	1 cut(s)	503
AspLEI	GCGC	4 cut(s)	182, 200, 455, 486
AxyI	CCTNAGG	1 cut(s)	648
BalI	TGGCCA	3 cut(s)	381, 498, 760
BanI	GGYRCC	1 cut(s)	503
BbsI	GAAGAC	1 cut(s)	145
BccI	CCATC	3 cut(s)	620, 719, 776
BceAI	ACGGC	2 cut(s)	67, 194
BciT130I	CCWGG	3 cut(s)	383, 500, 757
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	701
BfaI	CTAG	1 cut(s)	864
BfmI	CTRYAG	4 cut(s)	276, 426, 717, 795
BfoI	RGCGCY	2 cut(s)	183, 201
BglII	AGATCT	2 cut(s)	748, 772
BmcAI	AGTACT	1 cut(s)	424
Bme1390I	CCNGG	3 cut(s)	383, 500, 757
BmiI	GGNNCC	1 cut(s)	505
BmrFI	CCNGG	3 cut(s)	383, 500, 757
BmsI	GCATC	3 cut(s)	84, 538, 652
BpiI	GAAGAC	1 cut(s)	145
BpmI	CTGGAG	3 cut(s)	84, 412, 545
Bpu10I	CCTNAGC	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	701
BsaJI	CCNNGG	2 cut(s)	432, 499
Bsc4I	CCNNNNNNNGG	1 cut(s)	569
Bse1I	ACTGG	3 cut(s)	101, 454, 528
Bse21I	CCTNAGG	1 cut(s)	648
Bse3DI	GCAATG	2 cut(s)	211, 828
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	3 cut(s)	383, 500, 757
BseDI	CCNNGG	2 cut(s)	432, 499
BseGI	GGATG	1 cut(s)	466
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	569
BseMI	GCAATG	2 cut(s)	211, 828
BseMII	CTCAG	2 cut(s)	639, 696
BseNI	ACTGG	3 cut(s)	101, 454, 528
BshFI	GGCC	4 cut(s)	381, 498, 760, 879
BshNI	GGYRCC	1 cut(s)	503
BslI	CCNNNNNNNGG	1 cut(s)	569
BsmAI	GTCTC	1 cut(s)	701
BsnI	GGCC	4 cut(s)	381, 498, 760, 879
Bso31I	GGTCTC	1 cut(s)	701
Bsp143I	GATC	3 cut(s)	229, 748, 772
BspANI	GGCC	4 cut(s)	381, 498, 760, 879
BspCNI	CTCAG	2 cut(s)	640, 697
BspLI	GGNNCC	1 cut(s)	505
BspMAI	CTGCAG	2 cut(s)	280, 430
BspT107I	GGYRCC	1 cut(s)	503
BspTNI	GGTCTC	1 cut(s)	701
BsrDI	GCAATG	2 cut(s)	211, 828
BsrI	ACTGG	3 cut(s)	101, 454, 528
BssECI	CCNNGG	2 cut(s)	432, 499
BssMI	GATC	3 cut(s)	229, 748, 772
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	3 cut(s)	383, 500, 757
Bst4CI	ACNGT	3 cut(s)	377, 718, 796
BstC8I	GCNNGC	2 cut(s)	73, 202
BstDEI	CTNAG	4 cut(s)	240, 606, 648, 705
BstEII	GGTNACC	1 cut(s)	266
BstF5I	GGATG	1 cut(s)	466
BstH2I	RGCGCY	2 cut(s)	183, 201
BstHHI	GCGC	4 cut(s)	182, 200, 455, 486
BstKTI	GATC	3 cut(s)	232, 751, 775
BstMAI	GTCTC	1 cut(s)	701
BstMBI	GATC	3 cut(s)	229, 748, 772
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 406, 602, 662
BstNI	CCWGG	3 cut(s)	383, 500, 757
BstPI	GGTNACC	1 cut(s)	266
BstSCI	CCNGG	3 cut(s)	381, 498, 755
BstSFI	CTRYAG	4 cut(s)	276, 426, 717, 795
BstV2I	GAAGAC	1 cut(s)	145
BstX2I	RGATCY	2 cut(s)	748, 772
BstXI	CCANNNNNNTGG	2 cut(s)	176, 514
BstYI	RGATCY	2 cut(s)	748, 772
Bsu36I	CCTNAGG	1 cut(s)	648
BsuRI	GGCC	4 cut(s)	381, 498, 760, 879
BtsCI	GGATG	1 cut(s)	466
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	2 cut(s)	268, 714
Cac8I	GCNNGC	2 cut(s)	73, 202
CfoI	GCGC	4 cut(s)	182, 200, 455, 486
Csp6I	GTAC	3 cut(s)	423, 437, 504
CviAII	CATG	2 cut(s)	272, 921
CviQI	GTAC	3 cut(s)	423, 437, 504
DdeI	CTNAG	4 cut(s)	240, 606, 648, 705
DpnI	GATC	3 cut(s)	231, 750, 774
DpnII	GATC	3 cut(s)	229, 748, 772
EaeI	YGGCCR	3 cut(s)	379, 496, 758
Eco130I	CCWWGG	1 cut(s)	432
Eco147I	AGGCCT	1 cut(s)	879
Eco31I	GGTCTC	1 cut(s)	701
Eco32I	GATATC	1 cut(s)	585
Eco57I	CTGAAG	1 cut(s)	866
Eco81I	CCTNAGG	1 cut(s)	648
Eco91I	GGTNACC	1 cut(s)	266
EcoO65I	GGTNACC	1 cut(s)	266
EcoRII	CCWGG	3 cut(s)	381, 498, 755
EcoRV	GATATC	1 cut(s)	585
EcoT14I	CCWWGG	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	2 cut(s)	275, 924
FatI	CATG	2 cut(s)	271, 920
FbaI	TGATCA	1 cut(s)	229
FokI	GGATG	1 cut(s)	453
FspBI	CTAG	1 cut(s)	864
GlaI	GCGC	4 cut(s)	181, 199, 454, 485
GsuI	CTGGAG	3 cut(s)	84, 412, 545
HaeII	RGCGCY	2 cut(s)	183, 201
HaeIII	GGCC	4 cut(s)	381, 498, 760, 879
HhaI	GCGC	4 cut(s)	182, 200, 455, 486
Hin1II	CATG	2 cut(s)	275, 924
Hin6I	GCGC	4 cut(s)	180, 198, 453, 484
HinP1I	GCGC	4 cut(s)	180, 198, 453, 484
HinfI	GANTC	4 cut(s)	13, 124, 841, 945
Hpy188I	TCNGA	6 cut(s)	115, 194, 706, 753, 846, 898
Hpy188III	TCNNGA	4 cut(s)	135, 391, 907, 957
HpyAV	CCTTC	3 cut(s)	681, 841, 919
HpyCH4III	ACNGT	3 cut(s)	377, 718, 796
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 406, 602, 662
HpyF3I	CTNAG	4 cut(s)	240, 606, 648, 705
Hsp92II	CATG	2 cut(s)	275, 924
HspAI	GCGC	4 cut(s)	180, 198, 453, 484
KpnI	GGTACC	1 cut(s)	507
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	3 cut(s)	229, 748, 772
LmnI	GCTCC	4 cut(s)	346, 526, 653, 869
LweI	GCATC	3 cut(s)	84, 538, 652
MaeI	CTAG	1 cut(s)	864
MaeIII	GTNAC	6 cut(s)	250, 266, 371, 519, 790, 833
MalI	GATC	3 cut(s)	231, 750, 774
MboI	GATC	3 cut(s)	229, 748, 772
MboII	GAAGA	3 cut(s)	119, 150, 452
MfeI	CAATTG	1 cut(s)	762
MflI	RGATCY	2 cut(s)	748, 772
MlsI	TGGCCA	3 cut(s)	381, 498, 760
MluCI	AATT	2 cut(s)	188, 762
MluNI	TGGCCA	3 cut(s)	381, 498, 760
MlyI	GAGTC	1 cut(s)	22
MnlI	CCTC	8 cut(s)	15, 121, 188, 408, 566, 643, 793, 890
Mox20I	TGGCCA	3 cut(s)	381, 498, 760
MscI	TGGCCA	3 cut(s)	381, 498, 760
MslI	CAYNNNNRTG	2 cut(s)	261, 546
Msp20I	TGGCCA	3 cut(s)	381, 498, 760
MspA1I	CMGCKG	2 cut(s)	145, 887
MspR9I	CCNGG	3 cut(s)	383, 500, 757
MunI	CAATTG	1 cut(s)	762
MvaI	CCWGG	3 cut(s)	383, 500, 757
MwoI	GCNNNNNNNGC	4 cut(s)	206, 406, 602, 662
NdeII	GATC	3 cut(s)	229, 748, 772
NlaIII	CATG	2 cut(s)	275, 924
NlaIV	GGNNCC	1 cut(s)	505
PceI	AGGCCT	1 cut(s)	879
PfeI	GAWTC	3 cut(s)	124, 841, 945
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
Psp6I	CCWGG	3 cut(s)	381, 498, 755
PspEI	GGTNACC	1 cut(s)	266
PspGI	CCWGG	3 cut(s)	381, 498, 755
PspN4I	GGNNCC	1 cut(s)	505
PstI	CTGCAG	2 cut(s)	280, 430
PsuI	RGATCY	2 cut(s)	748, 772
PvuII	CAGCTG	2 cut(s)	145, 887
RsaI	GTAC	3 cut(s)	424, 438, 505
RsaNI	GTAC	3 cut(s)	423, 437, 504
RseI	CAYNNNNRTG	2 cut(s)	261, 546
Sau3AI	GATC	3 cut(s)	229, 748, 772
ScaI	AGTACT	1 cut(s)	424
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	3 cut(s)	383, 500, 757
SfaNI	GCATC	3 cut(s)	84, 538, 652
SfcI	CTRYAG	4 cut(s)	276, 426, 717, 795
SmiMI	CAYNNNNRTG	2 cut(s)	261, 546
Sse9I	AATT	2 cut(s)	188, 762
SseBI	AGGCCT	1 cut(s)	879
SspMI	CTAG	1 cut(s)	864
StuI	AGGCCT	1 cut(s)	879
StyD4I	CCNGG	3 cut(s)	381, 498, 755
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	3 cut(s)	377, 718, 796
TaqI	TCGA	4 cut(s)	413, 628, 733, 780
TasI	AATT	2 cut(s)	188, 762
TatI	WGTACW	1 cut(s)	422
TfiI	GAWTC	3 cut(s)	124, 841, 945
TscAI	CASTG	2 cut(s)	268, 721
TspDTI	ATGAA	2 cut(s)	76, 839
TspRI	CASTG	2 cut(s)	268, 721
XapI	RAATTY	1 cut(s)	188
XspI	CTAG	1 cut(s)	864
ZrmI	AGTACT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.