MD06G1079200.v1.1

Serine racemase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0007770
Physical Location & Seq
Forward (+)
19505428 .. 19508016
2589 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1079200.v1.1.491

Sequence Viewer

Length: 1113 bp
ATGAACTCTGGAAGTGTGGAAGTAGAAGAGGTGAGCAATCTGCGTTTCTGGAATATTTGGCCAACGAACACCCTCCAAAATCAAGACTCTGTTGGTGTTGGGATAGAGATGGAAGCAGGGAGTCAAATGCCGGAGACGAAATATGCTGCTGATATTTCCTCTATAAAGGAAGCGCAAGCACGCATCGAGCCATTCGTGCACAAAACTCCGGTCTTGACCTCGGAATCCCTCAATGCTCTTTCAGGAAGACGCCTTTTTTTCAAATGCGAATGTTTACAGAAGGGTGGCGCTTTCAAATTCAGAGGCGCTTGCAATGCCGTGTTTTCACTTGATGATGATCAGGCTGCTAAGGGGGTTGTAACACACAGCAGTGGTAACCATGCTGCAGCATTGTCTTTGGCTGCAAAACTACGGGGGATCCCTGCATACATAGTTATACCAAAAAATGCTCCCAACTGCAAAGTTGAGAATGTCATTCGTTACGGTGGTCAGGTTATCTGGAGTGAGGCCACTATGCAGTCAAGGGAAAGTACAGCAGCTAAGGTGTTGCATGAAACTGGCGCACTTCTTCTCCATCCTTACAATGATAGGCGCATAATAAGTGGGCAGGGTACCATTTCACTGGAGCTTCTGGAGCAACAAGTTCCGCAGTTAGACGGCATTATAGTACCCATAAGCGGAGGTGGCTTGATATCAGGGGTGGCTTTGGCCGCCAAGTCCATCAACCCCGCGATTCGAATTTTTGCAGCTGAACCTGAGGGTGCTAACGATGCAGCTCAATCCAAATCAGCTGGGAGGATAATAACATTGCCTGAGACCAACACTGTTGCAGATGGGCTTCGAGCTTTTCTTGGAGACCTTACTTGGCCCATTGTGAGAGATCTTGTCGATGGCGTTATAACTGTAAATGACGAGGAGATAATAAATGCTATGAAACTCTGTTACGAGATTTTGAAGGTTGCAGTAGAACCCAGTGGAGCAATAGGCCTTGCTGCTGTTTTGTCCAAAAGTTTCAAGAAAAATTCTGCTTGGAAGGATTGCAGCAACATCGGAATTATACTTTCTGGAGGTAATGTAGATCTAGGCATCCTATGGGATGCCTACAAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000287 GO:0002237 GO:0003674 GO:0003824 GO:0003941 GO:0005488 GO:0005509 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006090 GO:0006520 GO:0006563 GO:0006564 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0008721 GO:0009058 GO:0009069 GO:0009070 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016594 GO:0016597 GO:0016829 GO:0016840 GO:0016841 GO:0016853 GO:0016854 GO:0016855 GO:0017076 GO:0017144 GO:0018114 GO:0019752 GO:0019842 GO:0019904 GO:0022607 GO:0030165 GO:0030170 GO:0030378 GO:0030554 GO:0031406 GO:0032496 GO:0032553 GO:0032555 GO:0032559 GO:0032787 GO:0033993 GO:0035639 GO:0036094 GO:0036361 GO:0036477 GO:0042165 GO:0042221 GO:0042802 GO:0042803 GO:0042866 GO:0043025 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043207 GO:0043436 GO:0043621 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046416 GO:0046437 GO:0046872 GO:0046983 GO:0047661 GO:0048037 GO:0050662 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051704 GO:0051707 GO:0065003 GO:0070178 GO:0070179 GO:0070279 GO:0071704 GO:0071840 GO:0072330 GO:0097159 GO:0097367 GO:0097458 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00260 ko01100 map00260 map01100
Pfam Domains
Protein Families
PALP

Protein Analysis

371

Amino Acids

39.54

Weight (kDa)

5.84

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 63 - 356 5e-77 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 899
Acc65I GGTACC 1 cut(s) 611
AccB1I GGYRCC 1 cut(s) 611
AccII CGCG 1 cut(s) 731
AciI CCGC 4 cut(s) 647, 678, 711, 729
AclWI GGATC 2 cut(s) 412, 425
AcoI YGGCCR 2 cut(s) 59, 708
AcsI RAATTY 3 cut(s) 296, 738, 1021
AcyI GRCGYC 1 cut(s) 250
AfaI GTAC 3 cut(s) 532, 613, 669
AfiI CCNNNNNNNGG 1 cut(s) 677
AgsI TTSAA 4 cut(s) 262, 295, 955, 1015
AleI CACNNNNGTG 1 cut(s) 369
AluBI AGCT 6 cut(s) 539, 628, 749, 776, 791, 845
AluI AGCT 6 cut(s) 539, 628, 749, 776, 791, 845
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 3 cut(s) 128, 809, 849
Alw44I GTGCAC 1 cut(s) 197
AlwI GGATC 2 cut(s) 412, 425
AoxI GGCC 5 cut(s) 59, 507, 708, 866, 985
ApaLI GTGCAC 1 cut(s) 197
ApoI RAATTY 3 cut(s) 296, 738, 1021
ArsI GACNNNNNNTTYG 2 cut(s) 195, 227
Asp718I GGTACC 1 cut(s) 611
AspLEI GCGC 5 cut(s) 175, 290, 308, 563, 594
AspS9I GGNCC 1 cut(s) 867
AsuHPI GGTGA 1 cut(s) 43
AsuII TTCGAA 1 cut(s) 736
AxyI CCTNAGG 1 cut(s) 756
BaeGI GKGCMC 1 cut(s) 201
BalI TGGCCA 1 cut(s) 61
BamHI GGATCC 1 cut(s) 417
BanI GGYRCC 1 cut(s) 611
BbsI GAAGAC 1 cut(s) 253
Bbv12I GWGCWC 1 cut(s) 201
BccI CCATC 5 cut(s) 103, 582, 728, 827, 884
BceAI ACGGC 2 cut(s) 302, 673
BcgI CGANNNNNNTGC 2 cut(s) 1030, 1064
BclI TGATCA 1 cut(s) 337
BcoDI GTCTC 3 cut(s) 128, 809, 849
BfaI CTAG 1 cut(s) 1082
BfmI CTRYAG 1 cut(s) 384
BfoI RGCGCY 2 cut(s) 291, 309
BglII AGATCT 2 cut(s) 880, 1078
BmgT120I GGNCC 1 cut(s) 867
BmiI GGNNCC 2 cut(s) 419, 613
BmrI ACTGGG 1 cut(s) 966
BmsI GCATC 4 cut(s) 192, 760, 1087, 1095
BmuI ACTGGG 1 cut(s) 966
BpiI GAAGAC 1 cut(s) 253
BpmI CTGGAG 4 cut(s) 520, 644, 653, 1086
Bpu10I CCTNAGC 2 cut(s) 348, 540
Bpu14I TTCGAA 1 cut(s) 736
BsaBI GATNNNNATC 1 cut(s) 336
BsaHI GRCGYC 1 cut(s) 250
BsaI GGTCTC 2 cut(s) 809, 849
BsaJI CCNNGG 1 cut(s) 219
BsaWI WCCGGW 1 cut(s) 208
BsaXI ACNNNNNCTCC 4 cut(s) 555, 585, 1059, 1089
Bsc4I CCNNNNNNNGG 1 cut(s) 677
Bse1I ACTGG 3 cut(s) 562, 627, 972
Bse21I CCTNAGG 1 cut(s) 756
Bse3DI GCAATG 2 cut(s) 319, 806
Bse8I GATNNNNATC 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 3 cut(s) 574, 1086, 1102
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 677
BseMI GCAATG 2 cut(s) 319, 806
BseMII CTCAG 2 cut(s) 747, 804
BseNI ACTGG 3 cut(s) 562, 627, 972
BseRI GAGGAG 1 cut(s) 929
BseSI GKGCMC 1 cut(s) 201
BseYI CCCAGC 1 cut(s) 791
Bsh1236I CGCG 1 cut(s) 731
BshFI GGCC 5 cut(s) 61, 509, 710, 868, 987
BshNI GGYRCC 1 cut(s) 611
BsiHKAI GWGCWC 1 cut(s) 201
BsiSI CCGG 2 cut(s) 131, 209
BslI CCNNNNNNNGG 1 cut(s) 677
BsmAI GTCTC 3 cut(s) 128, 809, 849
BsmBI CGTCTC 1 cut(s) 128
BsnI GGCC 5 cut(s) 61, 509, 710, 868, 987
Bso31I GGTCTC 2 cut(s) 809, 849
Bsp119I TTCGAA 1 cut(s) 736
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 4 cut(s) 337, 417, 880, 1078
BspACI CCGC 4 cut(s) 647, 678, 711, 729
BspANI GGCC 5 cut(s) 61, 509, 710, 868, 987
BspCNI CTCAG 2 cut(s) 748, 805
BspFNI CGCG 1 cut(s) 731
BspLI GGNNCC 2 cut(s) 419, 613
BspMAI CTGCAG 1 cut(s) 388
BspPI GGATC 2 cut(s) 412, 425
BspT104I TTCGAA 1 cut(s) 736
BspT107I GGYRCC 1 cut(s) 611
BspTNI GGTCTC 2 cut(s) 809, 849
BsrDI GCAATG 2 cut(s) 319, 806
BsrI ACTGG 3 cut(s) 562, 627, 972
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 4 cut(s) 337, 417, 880, 1078
BssNI GRCGYC 1 cut(s) 250
Bst4CI ACNGT 3 cut(s) 485, 826, 904
Bst6I CTCTTC 1 cut(s) 21
BstACI GRCGYC 1 cut(s) 250
BstBI TTCGAA 1 cut(s) 736
BstC8I GCNNGC 3 cut(s) 177, 181, 310
BstDEI CTNAG 4 cut(s) 348, 540, 756, 813
BstEII GGTNACC 1 cut(s) 374
BstF5I GGATG 3 cut(s) 574, 1086, 1102
BstFNI CGCG 1 cut(s) 731
BstH2I RGCGCY 2 cut(s) 291, 309
BstHHI GCGC 5 cut(s) 175, 290, 308, 563, 594
BstKTI GATC 4 cut(s) 340, 420, 883, 1081
BstMAI GTCTC 3 cut(s) 128, 809, 849
BstMBI GATC 4 cut(s) 337, 417, 880, 1078
BstMWI GCNNNNNNNGC 6 cut(s) 196, 314, 634, 684, 710, 770
BstPI GGTNACC 1 cut(s) 374
BstSFI CTRYAG 1 cut(s) 384
BstSLI GKGCMC 1 cut(s) 201
BstUI CGCG 1 cut(s) 731
BstV2I GAAGAC 1 cut(s) 253
BstX2I RGATCY 3 cut(s) 417, 880, 1078
BstXI CCANNNNNNTGG 1 cut(s) 622
BstYI RGATCY 3 cut(s) 417, 880, 1078
Bsu36I CCTNAGG 1 cut(s) 756
BsuRI GGCC 5 cut(s) 61, 509, 710, 868, 987
BtsCI GGATG 3 cut(s) 574, 1086, 1102
BtsI GCAGTG 1 cut(s) 376
BtsIMutI CAGTG 4 cut(s) 376, 620, 822, 979
Cac8I GCNNGC 3 cut(s) 177, 181, 310
CfoI GCGC 5 cut(s) 175, 290, 308, 563, 594
Cfr13I GGNCC 1 cut(s) 867
CseI GACGC 1 cut(s) 258
Csp6I GTAC 3 cut(s) 531, 612, 668
CviAII CATG 2 cut(s) 380, 551
CviQI GTAC 3 cut(s) 531, 612, 668
DdeI CTNAG 4 cut(s) 348, 540, 756, 813
DpnI GATC 4 cut(s) 339, 419, 882, 1080
DpnII GATC 4 cut(s) 337, 417, 880, 1078
EaeI YGGCCR 2 cut(s) 59, 708
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Eco147I AGGCCT 1 cut(s) 987
Eco31I GGTCTC 2 cut(s) 809, 849
Eco32I GATATC 1 cut(s) 693
Eco81I CCTNAGG 1 cut(s) 756
Eco91I GGTNACC 1 cut(s) 374
EcoO65I GGTNACC 1 cut(s) 374
EcoRV GATATC 1 cut(s) 693
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 2 cut(s) 383, 554
FatI CATG 2 cut(s) 379, 550
FauI CCCGC 1 cut(s) 736
FbaI TGATCA 1 cut(s) 337
FokI GGATG 3 cut(s) 561, 1073, 1109
FspBI CTAG 1 cut(s) 1082
GlaI GCGC 5 cut(s) 174, 289, 307, 562, 593
GsaI CCCAGC 1 cut(s) 795
GsuI CTGGAG 4 cut(s) 520, 644, 653, 1086
HaeII RGCGCY 2 cut(s) 291, 309
HaeIII GGCC 5 cut(s) 61, 509, 710, 868, 987
HapII CCGG 2 cut(s) 131, 209
HgaI GACGC 1 cut(s) 258
HhaI GCGC 5 cut(s) 175, 290, 308, 563, 594
Hin1I GRCGYC 1 cut(s) 250
Hin1II CATG 2 cut(s) 383, 554
Hin6I GCGC 5 cut(s) 173, 288, 306, 561, 592
HinP1I GCGC 5 cut(s) 173, 288, 306, 561, 592
HinfI GANTC 4 cut(s) 86, 121, 224, 733
HpaII CCGG 2 cut(s) 131, 209
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 2 cut(s) 199, 275
Hpy188I TCNGA 3 cut(s) 223, 302, 1052
Hpy188III TCNNGA 9 cut(s) 9, 49, 83, 214, 243, 499, 632, 1015, 1065
Hpy8I GTNNAC 2 cut(s) 199, 275
HpyAV CCTTC 3 cut(s) 274, 949, 1027
HpyCH4III ACNGT 3 cut(s) 485, 826, 904
HpyF10VI GCNNNNNNNGC 6 cut(s) 196, 314, 634, 684, 710, 770
HpyF3I CTNAG 4 cut(s) 348, 540, 756, 813
Hsp92I GRCGYC 1 cut(s) 250
Hsp92II CATG 2 cut(s) 383, 554
HspAI GCGC 5 cut(s) 173, 288, 306, 561, 592
KpnI GGTACC 1 cut(s) 615
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 4 cut(s) 337, 417, 880, 1078
LmnI GCTCC 4 cut(s) 454, 625, 634, 977
LweI GCATC 4 cut(s) 192, 760, 1087, 1095
MaeI CTAG 1 cut(s) 1082
MaeIII GTNAC 4 cut(s) 358, 374, 479, 941
MalI GATC 4 cut(s) 339, 419, 882, 1080
MboI GATC 4 cut(s) 337, 417, 880, 1078
MboII GAAGA 3 cut(s) 38, 258, 560
MflI RGATCY 3 cut(s) 417, 880, 1078
MhlI GDGCHC 1 cut(s) 201
MlsI TGGCCA 1 cut(s) 61
MluCI AATT 4 cut(s) 296, 738, 1021, 1053
MluNI TGGCCA 1 cut(s) 61
MlyI GAGTC 2 cut(s) 80, 130
Mox20I TGGCCA 1 cut(s) 61
MscI TGGCCA 1 cut(s) 61
MslI CAYNNNNRTG 1 cut(s) 369
Msp20I TGGCCA 1 cut(s) 61
MspA1I CMGCKG 2 cut(s) 749, 791
MspI CCGG 2 cut(s) 131, 209
MvnI CGCG 1 cut(s) 731
MwoI GCNNNNNNNGC 6 cut(s) 196, 314, 634, 684, 710, 770
NdeII GATC 4 cut(s) 337, 417, 880, 1078
NlaIII CATG 2 cut(s) 383, 554
NlaIV GGNNCC 2 cut(s) 419, 613
NspV TTCGAA 1 cut(s) 736
OliI CACNNNNGTG 1 cut(s) 369
PceI AGGCCT 1 cut(s) 987
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PfeI GAWTC 2 cut(s) 224, 733
PleI GAGTC 2 cut(s) 80, 129
PpsI GAGTC 2 cut(s) 80, 129
PsiI TTATAA 1 cut(s) 899
PspEI GGTNACC 1 cut(s) 374
PspFI CCCAGC 1 cut(s) 791
PspN4I GGNNCC 2 cut(s) 419, 613
PspPI GGNCC 1 cut(s) 867
PstI CTGCAG 1 cut(s) 388
PsuI RGATCY 3 cut(s) 417, 880, 1078
PvuII CAGCTG 2 cut(s) 749, 791
RsaI GTAC 3 cut(s) 532, 613, 669
RsaNI GTAC 3 cut(s) 531, 612, 668
RseI CAYNNNNRTG 1 cut(s) 369
Sau3AI GATC 4 cut(s) 337, 417, 880, 1078
Sau96I GGNCC 1 cut(s) 867
SchI GAGTC 2 cut(s) 80, 130
SduI GDGCHC 1 cut(s) 201
SfaNI GCATC 4 cut(s) 192, 760, 1087, 1095
SfcI CTRYAG 1 cut(s) 384
SfuI TTCGAA 1 cut(s) 736
SmiMI CAYNNNNRTG 1 cut(s) 369
Sse9I AATT 4 cut(s) 296, 738, 1021, 1053
SseBI AGGCCT 1 cut(s) 987
SsiI CCGC 4 cut(s) 647, 678, 711, 729
SspI AATATT 1 cut(s) 55
SspMI CTAG 1 cut(s) 1082
StuI AGGCCT 1 cut(s) 987
TaaI ACNGT 3 cut(s) 485, 826, 904
TaqI TCGA 4 cut(s) 186, 736, 841, 888
TasI AATT 4 cut(s) 296, 738, 1021, 1053
TatI WGTACW 1 cut(s) 530
TauI GCSGC 1 cut(s) 713
TfiI GAWTC 2 cut(s) 224, 733
TscAI CASTG 4 cut(s) 376, 627, 829, 979
TspDTI ATGAA 3 cut(s) 17, 567, 947
TspRI CASTG 4 cut(s) 376, 627, 829, 979
VneI GTGCAC 1 cut(s) 197
XapI RAATTY 3 cut(s) 296, 738, 1021
XspI CTAG 1 cut(s) 1082
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.