Prupe.5G097800_v2.0.a1

Serine racemase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0007770
Physical Location & Seq
Reverse (-)
10640053 .. 10640947
895 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G097800.1

Sequence Viewer

Length: 558 bp
ATGAGGATTGAAGAAGAGAGGTCGCCGGTTATGTCTGAGCGAGAGAGAGGGGCTAGAAGACGGCTCGTGTTAGAGTTAGGGTTTGAGAAGGAAAATTGCATTTCTATGCGACATTCTATTCATCAGCTAATTGTAATTGACGTCGTCGATCTTGCCTCCAGCGTGCTCCACCCCCACCTTCTTAGCCTCCATCTGAAAAGGGCTAACGCGGATGCAGCTGAATCCAAAGCAGCTGGGAGGATAATAACATTGTCTGAGACCAACACTGTAGCAGATGGTCTTCGAGCTTTTCTTGGAGATCTTACCTGGCCCGTAGTAAGAGATCTTGTCGATGGCATCATAACCGTGGAGGACAAGGAGATAATACACGCCATGAAACTCTGTTATGAGATTCTGAAGGTTGCAGTAGAACCTAGCGGAGCGATAGGTCTTGCTGCTGTATTGTCCAATAGTTTCAAGAAAAACTCTGCTTGGAAGGATTGCAGCAACATAGGAATTATACTTTCTGGAGGTAATGTAGATCTAGGCATCCTATTCTTGTGTGTTCACTTGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000287 GO:0002237 GO:0003674 GO:0003824 GO:0003941 GO:0005488 GO:0005509 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006090 GO:0006520 GO:0006563 GO:0006564 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0008721 GO:0009058 GO:0009069 GO:0009070 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016594 GO:0016597 GO:0016829 GO:0016840 GO:0016841 GO:0016853 GO:0016854 GO:0016855 GO:0017076 GO:0017144 GO:0018114 GO:0019752 GO:0019842 GO:0019904 GO:0022607 GO:0030165 GO:0030170 GO:0030378 GO:0030554 GO:0031406 GO:0032496 GO:0032553 GO:0032555 GO:0032559 GO:0032787 GO:0033993 GO:0035639 GO:0036094 GO:0036361 GO:0036477 GO:0042165 GO:0042221 GO:0042802 GO:0042803 GO:0042866 GO:0043025 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043207 GO:0043436 GO:0043621 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046416 GO:0046437 GO:0046872 GO:0046983 GO:0047661 GO:0048037 GO:0050662 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051704 GO:0051707 GO:0065003 GO:0070178 GO:0070179 GO:0070279 GO:0071704 GO:0071840 GO:0072330 GO:0097159 GO:0097367 GO:0097458 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00260 ko01100 map00260 map01100
Pfam Domains
Protein Families
PALP

Protein Analysis

186

Amino Acids

20.31

Weight (kDa)

6.16

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 144
AccII CGCG 1 cut(s) 209
AciI CCGC 2 cut(s) 209, 417
AcuI CTGAAG 1 cut(s) 416
AcyI GRCGYC 1 cut(s) 141
AgsI TTSAA 2 cut(s) 11, 457
AjnI CCWGG 1 cut(s) 305
AluBI AGCT 4 cut(s) 127, 218, 233, 287
AluI AGCT 4 cut(s) 127, 218, 233, 287
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 251
AoxI GGCC 1 cut(s) 308
ApeKI GCWGC 4 cut(s) 215, 230, 434, 483
AspS9I GGNCC 1 cut(s) 309
BauI CACGAG 1 cut(s) 65
BbsI GAAGAC 2 cut(s) 64, 272
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 4 cut(s) 227, 242, 421, 495
BccI CCATC 3 cut(s) 198, 269, 326
BceAI ACGGC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 3 cut(s) 54, 414, 524
BfmI CTRYAG 1 cut(s) 267
BglII AGATCT 3 cut(s) 298, 322, 520
BisI GCNGC 4 cut(s) 216, 231, 435, 484
BlsI GCNGC 4 cut(s) 217, 232, 436, 485
Bme1390I CCNGG 1 cut(s) 307
BmgT120I GGNCC 1 cut(s) 309
BmrFI CCNGG 1 cut(s) 307
BmsI GCATC 3 cut(s) 202, 345, 537
BpiI GAAGAC 2 cut(s) 64, 272
BpmI CTGGAG 2 cut(s) 142, 528
BsaHI GRCGYC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 345
BsaXI ACNNNNNCTCC 2 cut(s) 501, 531
Bse118I RCCGGY 1 cut(s) 25
BseBI CCWGG 1 cut(s) 307
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 2 cut(s) 217, 528
BseMII CTCAG 2 cut(s) 27, 246
BseXI GCAGC 4 cut(s) 227, 242, 421, 495
BseYI CCCAGC 1 cut(s) 233
Bsh1236I CGCG 1 cut(s) 209
BshFI GGCC 1 cut(s) 310
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 251
BsnI GGCC 1 cut(s) 310
Bso31I GGTCTC 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 4 cut(s) 148, 298, 322, 520
BspACI CCGC 2 cut(s) 209, 417
BspANI GGCC 1 cut(s) 310
BspCNI CTCAG 2 cut(s) 28, 247
BspFNI CGCG 1 cut(s) 209
BspTNI GGTCTC 1 cut(s) 251
BsrFI RCCGGY 1 cut(s) 25
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 4 cut(s) 148, 298, 322, 520
BssNI GRCGYC 1 cut(s) 141
BssSI CACGAG 1 cut(s) 65
Bst2BI CACGAG 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 307
Bst4CI ACNGT 2 cut(s) 268, 346
Bst6I CTCTTC 1 cut(s) 9
BstACI GRCGYC 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 3 cut(s) 36, 182, 255
BstDSI CCRYGG 1 cut(s) 345
BstF5I GGATG 2 cut(s) 217, 528
BstFNI CGCG 1 cut(s) 209
BstKTI GATC 4 cut(s) 151, 301, 325, 523
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 4 cut(s) 148, 298, 322, 520
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNI CCWGG 1 cut(s) 307
BstSCI CCNGG 1 cut(s) 305
BstSFI CTRYAG 1 cut(s) 267
BstUI CGCG 1 cut(s) 209
BstV1I GCAGC 4 cut(s) 227, 242, 421, 495
BstV2I GAAGAC 2 cut(s) 64, 272
BstX2I RGATCY 3 cut(s) 298, 322, 520
BstYI RGATCY 3 cut(s) 298, 322, 520
BsuRI GGCC 1 cut(s) 310
BtgI CCRYGG 1 cut(s) 345
BtsCI GGATG 2 cut(s) 217, 528
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 1 cut(s) 164
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 309
CviAII CATG 1 cut(s) 373
CviJI RGCY 9 cut(s) 53, 64, 127, 186, 203, 218, 233, 287, 310
CviKI_1 RGCY 9 cut(s) 53, 64, 127, 186, 203, 218, 233, 287, 310
DdeI CTNAG 3 cut(s) 36, 182, 255
DpnI GATC 4 cut(s) 150, 300, 324, 522
DpnII GATC 4 cut(s) 148, 298, 322, 520
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 305
FaeI CATG 1 cut(s) 376
FaiI YATR 8 cut(s) 32, 107, 341, 374, 387, 491, 500, 556
FatI CATG 1 cut(s) 372
Fnu4HI GCNGC 4 cut(s) 216, 231, 435, 484
FokI GGATG 2 cut(s) 224, 515
Fsp4HI GCNGC 4 cut(s) 216, 231, 435, 484
FspBI CTAG 3 cut(s) 54, 414, 524
GluI GCNGC 4 cut(s) 216, 231, 435, 484
GsaI CCCAGC 1 cut(s) 237
GsuI CTGGAG 2 cut(s) 142, 528
HaeIII GGCC 1 cut(s) 310
HapII CCGG 1 cut(s) 26
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 1 cut(s) 376
HinfI GANTC 2 cut(s) 221, 391
HpaII CCGG 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 547
Hpy188I TCNGA 4 cut(s) 37, 195, 256, 396
Hpy188III TCNNGA 2 cut(s) 457, 507
Hpy8I GTNNAC 1 cut(s) 547
Hpy99I CGWCG 2 cut(s) 146, 149
HpyAV CCTTC 4 cut(s) 82, 188, 391, 469
HpyCH4III ACNGT 2 cut(s) 268, 346
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 4 cut(s) 99, 215, 404, 483
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 3 cut(s) 36, 182, 255
HpySE526I ACGT 1 cut(s) 141
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 1 cut(s) 376
Kzo9I GATC 4 cut(s) 148, 298, 322, 520
LmnI GCTCC 2 cut(s) 171, 419
LpnPI CCDG 6 cut(s) 39, 172, 219, 292, 319, 492
Lsp1109I GCAGC 4 cut(s) 227, 242, 421, 495
LweI GCATC 3 cut(s) 202, 345, 537
MaeI CTAG 3 cut(s) 54, 414, 524
MaeII ACGT 1 cut(s) 141
MalI GATC 4 cut(s) 150, 300, 324, 522
MboI GATC 4 cut(s) 148, 298, 322, 520
MboII GAAGA 4 cut(s) 23, 26, 69, 272
MflI RGATCY 3 cut(s) 298, 322, 520
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 4 cut(s) 94, 129, 135, 495
MnlI CCTC 7 cut(s) 12, 41, 166, 197, 231, 343, 503
MslI CAYNNNNRTG 2 cut(s) 104, 344
MspA1I CMGCKG 2 cut(s) 218, 233
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 307
MvaI CCWGG 1 cut(s) 307
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 215
NdeII GATC 4 cut(s) 148, 298, 322, 520
NlaIII CATG 1 cut(s) 376
PfeI GAWTC 2 cut(s) 221, 391
PflFI GACNNNGTC 1 cut(s) 143
PkrI GCNGC 4 cut(s) 217, 232, 436, 485
Psp6I CCWGG 1 cut(s) 305
PspFI CCCAGC 1 cut(s) 233
PspGI CCWGG 1 cut(s) 305
PspPI GGNCC 1 cut(s) 309
PsuI RGATCY 3 cut(s) 298, 322, 520
PsyI GACNNNGTC 1 cut(s) 143
PvuII CAGCTG 2 cut(s) 218, 233
RseI CAYNNNNRTG 2 cut(s) 104, 344
SatI GCNGC 4 cut(s) 216, 231, 435, 484
Sau3AI GATC 4 cut(s) 148, 298, 322, 520
Sau96I GGNCC 1 cut(s) 309
ScrFI CCNGG 1 cut(s) 307
SduI GDGCHC 1 cut(s) 168
SfaNI GCATC 3 cut(s) 202, 345, 537
SfcI CTRYAG 1 cut(s) 267
SmiMI CAYNNNNRTG 2 cut(s) 104, 344
Sse9I AATT 4 cut(s) 94, 129, 135, 495
SsiI CCGC 2 cut(s) 209, 417
SspMI CTAG 3 cut(s) 54, 414, 524
StyD4I CCNGG 1 cut(s) 305
TaaI ACNGT 2 cut(s) 268, 346
TaiI ACGT 1 cut(s) 144
TaqI TCGA 3 cut(s) 147, 283, 330
TasI AATT 4 cut(s) 94, 129, 135, 495
TfiI GAWTC 2 cut(s) 221, 391
TscAI CASTG 1 cut(s) 271
TseI GCWGC 4 cut(s) 215, 230, 434, 483
TspDTI ATGAA 2 cut(s) 110, 389
TspRI CASTG 1 cut(s) 271
Tth111I GACNNNGTC 1 cut(s) 143
XspI CTAG 3 cut(s) 54, 414, 524
ZraI GACGTC 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.