Prupe.5G097600_v2.0.a1

Serine racemase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0007770
Physical Location & Seq
Reverse (-)
10628171 .. 10631124
2954 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G097600.6

Sequence Viewer

Length: 1005 bp
ATGGAAGCAGAGAGTCAAATGAGGGAGGTAAAATATGCTGCTGATATTTCCTCTATAAGGGAAGCACAAGCACGCATCAAGCCATTCATACACCAAACTCCTGTCTTGTCCTCTGAATCTTTGAATGCTCTTGCAGGAAGGCAGCTGTTTTTCAAATGTGAATGTTTTCAAAAGGGTGGTGCTTTCAAATTCAGAGGCGCTTGCAATGCTGTATTTTCACTCGATGATGATCAGGCTGTTAAAGGGGTTGTAACACACAGCAGTGGTAACCATGCTGCAGCATTGTCTTTGGCTGCAAAACTACGTGGAATCCCTGCATATATAGTTATACCAAAAAATGCTCCGAAATGCAAAGTTGAGAATGTCATTCGTTACGGTGGTCAGGTTATCTGGAGTGAGCCCACAATGCAGTCAAGGGAAAGTACCGCAGTCAAGGTGTTGCAAGAAACTGGCGCAGTTCTTCTACATCCTTATAACGATAGGCGCATAATAAGTGGGCAGGGTACCATATCATTGGAGCTTCTGGAGCAACAAGTTCCACAGTTAGACACTATTATAGTTCCCATAAGTGGAGGTGGCTTGATATCAGGTGTGGCTTTGGCTGCCAAGTCCATCAACCCTGCAATTCGAGTTTTAGCTGCTGAGCCTGAGGGAGCCAACGATGCAGCTCAATCCAAAGCAGCTGGGAGGATAATAACATTGCCCGAGACCAACACTGTAGCAGATGGTCTTCGAGCTTTTCTTGGAGATCTTACCTGGCCCGTAGTAAGAGATCTTGTCGATGGCATCATAACCGTGGAGGACAAGGAGATAATACACGCCATGAAACTCTGTTATGAGATTCTGAAGGTTGCAGTAGAACCTAGCGGAGCAATAGGCCTTGCTGCTGTATTGTCCGATAGTTTCAAGAAAAACTCTGCTTGGAAGGATTGCAGCAACATAGGAATTATACTTTCTGGAGGTAATGTAGATCTAGGCATCTTATGGGATGCCTACAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000287 GO:0002237 GO:0003674 GO:0003824 GO:0003941 GO:0005488 GO:0005509 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006090 GO:0006520 GO:0006563 GO:0006564 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0008721 GO:0009058 GO:0009069 GO:0009070 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016594 GO:0016597 GO:0016829 GO:0016840 GO:0016841 GO:0016853 GO:0016854 GO:0016855 GO:0017076 GO:0017144 GO:0018114 GO:0019752 GO:0019842 GO:0019904 GO:0022607 GO:0030165 GO:0030170 GO:0030378 GO:0030554 GO:0031406 GO:0032496 GO:0032553 GO:0032555 GO:0032559 GO:0032787 GO:0033993 GO:0035639 GO:0036094 GO:0036361 GO:0036477 GO:0042165 GO:0042221 GO:0042802 GO:0042803 GO:0042866 GO:0043025 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043207 GO:0043436 GO:0043621 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046416 GO:0046437 GO:0046872 GO:0046983 GO:0047661 GO:0048037 GO:0050662 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051704 GO:0051707 GO:0065003 GO:0070178 GO:0070179 GO:0070279 GO:0071704 GO:0071840 GO:0072330 GO:0097159 GO:0097367 GO:0097458 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00260 ko01100 map00260 map01100
Pfam Domains
Protein Families
PALP

Protein Analysis

335

Amino Acids

35.76

Weight (kDa)

6.96

Isoelectric Point (pI)

30.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 474
Acc65I GGTACC 1 cut(s) 503
AccB1I GGYRCC 1 cut(s) 503
AciI CCGC 2 cut(s) 426, 867
AcsI RAATTY 1 cut(s) 188
AcuI CTGAAG 1 cut(s) 866
AfaI GTAC 2 cut(s) 424, 505
AfiI CCNNNNNNNGG 2 cut(s) 57, 569
AgsI TTSAA 5 cut(s) 124, 154, 170, 187, 907
AjnI CCWGG 1 cut(s) 755
AleI CACNNNNGTG 1 cut(s) 261
AluBI AGCT 6 cut(s) 145, 520, 638, 668, 683, 737
AluI AGCT 6 cut(s) 145, 520, 638, 668, 683, 737
Alw26I GTCTC 1 cut(s) 701
Ama87I CYCGRG 1 cut(s) 704
AoxI GGCC 2 cut(s) 758, 877
ApoI RAATTY 1 cut(s) 188
Asp700I GAANNNNTTC 1 cut(s) 165
Asp718I GGTACC 1 cut(s) 503
AspLEI GCGC 3 cut(s) 200, 455, 486
AspS9I GGNCC 1 cut(s) 759
AvaI CYCGRG 1 cut(s) 704
AxyI CCTNAGG 1 cut(s) 648
BanI GGYRCC 1 cut(s) 503
BanII GRGCYC 1 cut(s) 402
BbsI GAAGAC 1 cut(s) 722
BccI CCATC 3 cut(s) 620, 719, 776
BciT130I CCWGG 1 cut(s) 757
BclI TGATCA 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 701
BfaI CTAG 2 cut(s) 864, 974
BfmI CTRYAG 3 cut(s) 276, 717, 994
BfoI RGCGCY 1 cut(s) 201
BglII AGATCT 3 cut(s) 748, 772, 970
BlpI GCTNAGC 1 cut(s) 642
Bme1390I CCNGG 1 cut(s) 757
BmeT110I CYCGRG 1 cut(s) 704
BmgT120I GGNCC 1 cut(s) 759
BmiI GGNNCC 2 cut(s) 505, 655
BmrFI CCNGG 1 cut(s) 757
BmsI GCATC 5 cut(s) 84, 652, 795, 979, 987
BpiI GAAGAC 1 cut(s) 722
BpmI CTGGAG 3 cut(s) 412, 545, 978
Bpu1102I GCTNAGC 1 cut(s) 642
BsaAI YACGTR 1 cut(s) 305
BsaBI GATNNNNATC 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 701
BsaJI CCNNGG 1 cut(s) 795
BsaXI ACNNNNNCTCC 2 cut(s) 951, 981
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 569
Bse1I ACTGG 1 cut(s) 454
Bse21I CCTNAGG 1 cut(s) 648
Bse3DI GCAATG 2 cut(s) 211, 698
Bse8I GATNNNNATC 1 cut(s) 228
BseBI CCWGG 1 cut(s) 757
BseDI CCNNGG 1 cut(s) 795
BseGI GGATG 2 cut(s) 466, 994
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 2 cut(s) 57, 569
BseMI GCAATG 2 cut(s) 211, 698
BseMII CTCAG 2 cut(s) 633, 639
BseNI ACTGG 1 cut(s) 454
BseYI CCCAGC 1 cut(s) 683
BshFI GGCC 2 cut(s) 760, 879
BshNI GGYRCC 1 cut(s) 503
BsiHKCI CYCGRG 1 cut(s) 704
BslI CCNNNNNNNGG 2 cut(s) 57, 569
BsmAI GTCTC 1 cut(s) 701
BsmI GAATGC 1 cut(s) 130
BsnI GGCC 2 cut(s) 760, 879
Bso31I GGTCTC 1 cut(s) 701
BsoBI CYCGRG 1 cut(s) 704
Bsp1286I GDGCHC 1 cut(s) 402
Bsp143I GATC 4 cut(s) 229, 748, 772, 970
Bsp1720I GCTNAGC 1 cut(s) 642
BspACI CCGC 2 cut(s) 426, 867
BspANI GGCC 2 cut(s) 760, 879
BspCNI CTCAG 2 cut(s) 634, 640
BspLI GGNNCC 2 cut(s) 505, 655
BspMAI CTGCAG 1 cut(s) 280
BspT107I GGYRCC 1 cut(s) 503
BspTNI GGTCTC 1 cut(s) 701
BsrDI GCAATG 2 cut(s) 211, 698
BsrI ACTGG 1 cut(s) 454
BssECI CCNNGG 1 cut(s) 795
BssMI GATC 4 cut(s) 229, 748, 772, 970
Bst2UI CCWGG 1 cut(s) 757
Bst4CI ACNGT 4 cut(s) 377, 543, 718, 796
BstBAI YACGTR 1 cut(s) 305
BstC8I GCNNGC 2 cut(s) 73, 202
BstDEI CTNAG 2 cut(s) 642, 648
BstDSI CCRYGG 1 cut(s) 795
BstEII GGTNACC 1 cut(s) 266
BstENI CCTNNNNNAGG 1 cut(s) 55
BstF5I GGATG 2 cut(s) 466, 994
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 3 cut(s) 200, 455, 486
BstKTI GATC 4 cut(s) 232, 751, 775, 973
BstMAI GTCTC 1 cut(s) 701
BstMBI GATC 4 cut(s) 229, 748, 772, 970
BstMWI GCNNNNNNNGC 5 cut(s) 206, 406, 526, 602, 662
BstNI CCWGG 1 cut(s) 757
BstPI GGTNACC 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 755
BstSFI CTRYAG 3 cut(s) 276, 717, 994
BstV2I GAAGAC 1 cut(s) 722
BstX2I RGATCY 3 cut(s) 748, 772, 970
BstXI CCANNNNNNTGG 1 cut(s) 514
BstYI RGATCY 3 cut(s) 748, 772, 970
Bsu36I CCTNAGG 1 cut(s) 648
BsuRI GGCC 2 cut(s) 760, 879
BtgI CCRYGG 1 cut(s) 795
BtsCI GGATG 2 cut(s) 466, 994
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 2 cut(s) 268, 714
Cac8I GCNNGC 2 cut(s) 73, 202
CfoI GCGC 3 cut(s) 200, 455, 486
Cfr13I GGNCC 1 cut(s) 759
Csp6I GTAC 2 cut(s) 423, 504
CviAII CATG 2 cut(s) 272, 823
CviQI GTAC 2 cut(s) 423, 504
DdeI CTNAG 2 cut(s) 642, 648
DpnI GATC 4 cut(s) 231, 750, 774, 972
DpnII GATC 4 cut(s) 229, 748, 772, 970
Eco147I AGGCCT 1 cut(s) 879
Eco24I GRGCYC 1 cut(s) 402
Eco31I GGTCTC 1 cut(s) 701
Eco32I GATATC 1 cut(s) 585
Eco57I CTGAAG 1 cut(s) 866
Eco81I CCTNAGG 1 cut(s) 648
Eco88I CYCGRG 1 cut(s) 704
Eco91I GGTNACC 1 cut(s) 266
EcoNI CCTNNNNNAGG 1 cut(s) 55
EcoO65I GGTNACC 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 755
EcoRV GATATC 1 cut(s) 585
EcoT38I GRGCYC 1 cut(s) 402
FaeI CATG 2 cut(s) 275, 826
FatI CATG 2 cut(s) 271, 822
FbaI TGATCA 1 cut(s) 229
FokI GGATG 2 cut(s) 453, 1001
FriOI GRGCYC 1 cut(s) 402
FspBI CTAG 2 cut(s) 864, 974
GlaI GCGC 3 cut(s) 199, 454, 485
GsaI CCCAGC 1 cut(s) 687
GsuI CTGGAG 3 cut(s) 412, 545, 978
HaeII RGCGCY 1 cut(s) 201
HaeIII GGCC 2 cut(s) 760, 879
HhaI GCGC 3 cut(s) 200, 455, 486
Hin1II CATG 2 cut(s) 275, 826
Hin6I GCGC 3 cut(s) 198, 453, 484
HinP1I GCGC 3 cut(s) 198, 453, 484
HinfI GANTC 4 cut(s) 13, 116, 309, 841
Hpy188I TCNGA 5 cut(s) 115, 194, 345, 846, 898
Hpy188III TCNNGA 4 cut(s) 391, 524, 907, 957
HpyAV CCTTC 3 cut(s) 132, 841, 919
HpyCH4III ACNGT 4 cut(s) 377, 543, 718, 796
HpyCH4IV ACGT 1 cut(s) 304
HpyF10VI GCNNNNNNNGC 5 cut(s) 206, 406, 526, 602, 662
HpyF3I CTNAG 2 cut(s) 642, 648
HpySE526I ACGT 1 cut(s) 304
Hsp92II CATG 2 cut(s) 275, 826
HspAI GCGC 3 cut(s) 198, 453, 484
KpnI GGTACC 1 cut(s) 507
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 4 cut(s) 229, 748, 772, 970
LmnI GCTCC 5 cut(s) 346, 517, 526, 653, 869
LweI GCATC 5 cut(s) 84, 652, 795, 979, 987
MaeI CTAG 2 cut(s) 864, 974
MaeII ACGT 1 cut(s) 304
MaeIII GTNAC 3 cut(s) 250, 266, 371
MalI GATC 4 cut(s) 231, 750, 774, 972
MboI GATC 4 cut(s) 229, 748, 772, 970
MboII GAAGA 2 cut(s) 452, 722
MflI RGATCY 3 cut(s) 748, 772, 970
MhlI GDGCHC 1 cut(s) 402
MluCI AATT 3 cut(s) 188, 624, 945
MlyI GAGTC 1 cut(s) 22
MroXI GAANNNNTTC 1 cut(s) 165
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 2 cut(s) 261, 794
MspA1I CMGCKG 2 cut(s) 145, 683
MspR9I CCNGG 1 cut(s) 757
Mva1269I GAATGC 1 cut(s) 130
MvaI CCWGG 1 cut(s) 757
MwoI GCNNNNNNNGC 5 cut(s) 206, 406, 526, 602, 662
NdeII GATC 4 cut(s) 229, 748, 772, 970
NlaIII CATG 2 cut(s) 275, 826
NlaIV GGNNCC 2 cut(s) 505, 655
OliI CACNNNNGTG 1 cut(s) 261
PceI AGGCCT 1 cut(s) 879
PctI GAATGC 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 165
PfeI GAWTC 3 cut(s) 116, 309, 841
PleI GAGTC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 21
Ppu21I YACGTR 1 cut(s) 305
PsiI TTATAA 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 755
PspEI GGTNACC 1 cut(s) 266
PspFI CCCAGC 1 cut(s) 683
PspGI CCWGG 1 cut(s) 755
PspN4I GGNNCC 2 cut(s) 505, 655
PspPI GGNCC 1 cut(s) 759
PstI CTGCAG 1 cut(s) 280
PsuI RGATCY 3 cut(s) 748, 772, 970
PvuII CAGCTG 2 cut(s) 145, 683
RsaI GTAC 2 cut(s) 424, 505
RsaNI GTAC 2 cut(s) 423, 504
RseI CAYNNNNRTG 2 cut(s) 261, 794
SaqAI TTAA 1 cut(s) 240
Sau3AI GATC 4 cut(s) 229, 748, 772, 970
Sau96I GGNCC 1 cut(s) 759
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 1 cut(s) 757
SduI GDGCHC 1 cut(s) 402
SfaNI GCATC 5 cut(s) 84, 652, 795, 979, 987
SfcI CTRYAG 3 cut(s) 276, 717, 994
SmiMI CAYNNNNRTG 2 cut(s) 261, 794
Sse9I AATT 3 cut(s) 188, 624, 945
SseBI AGGCCT 1 cut(s) 879
SsiI CCGC 2 cut(s) 426, 867
SspMI CTAG 2 cut(s) 864, 974
StuI AGGCCT 1 cut(s) 879
StyD4I CCNGG 1 cut(s) 755
TaaI ACNGT 4 cut(s) 377, 543, 718, 796
TaiI ACGT 1 cut(s) 307
TaqI TCGA 4 cut(s) 222, 628, 733, 780
TasI AATT 3 cut(s) 188, 624, 945
TfiI GAWTC 3 cut(s) 116, 309, 841
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 2 cut(s) 268, 721
TspDTI ATGAA 2 cut(s) 76, 839
TspRI CASTG 2 cut(s) 268, 721
XagI CCTNNNNNAGG 1 cut(s) 55
XapI RAATTY 1 cut(s) 188
XmnI GAANNNNTTC 1 cut(s) 165
XspI CTAG 2 cut(s) 864, 974
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.