Rh7BG172800

Serine racemase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0007770
Physical Location & Seq
Forward (+)
13534800 .. 13537357
2558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG172800.1

Sequence Viewer

Length: 916 bp
ATGTTTCCAAAAGGGGTGAGAAGCCATTTAGCAGTTCATGATGTTTTGGCGCTTTCAAATTCAGAGGCGCTTGCAATGCCGTGTTTTCACTTGATGATGATCAGGCTGCTAAAGGGGTTGCAACACATAGCAGGTTCTCTTCGGGCTCTTTTCTTCGGATGGTCATTTTCTTTGACTAGCTTATGTGATTATCACCTGATATTTTCCTCCAAATTTAGTGGTAACCATGCTGCAGCATTGTCTTTGGCTGCAAAACTACGGGGTATTCCTGCATATATAGTTATACCGAAAAATGCTCCAAAATGCAAAGTTGAGAATGTCATGCGTTACGGTGGCCAGGTTATCTGGAGTGAGCCAACAATGCAGTCGAGGGAAAGTACTGCAGCCAAGGTACTGCAAGAAACTGGCGCAGTTCTTCTACATCCCTACAATGACAGGCGCATAATAAGTGGCCAGGGTACCATATCATTGGAGTTAATGGAGCAACAAGTTCCACATTTAGATGCTATTGTAGTTCCCATAAGTGGAGGTGGCTTGATATCAGGTGTGGCTTTAGCTGCTAAGTCCATCAATCCTGCCATTCGAGTTTTTGCTGCTGAACCTGAGGGAGCTAATGATGCAGCTCAATCCAAAGAAGCTGGAAGGATAATAACATTGTCTGAGACCAACACTGTAGCAGATGGACTTCGAGCTTTTCTGGGAGATCTGACCTGGCCAATAGTAAGAGATCTTGTCGATGGCATTATAACTGTAGAGGACAAGGAGATAATAAATGCAATGAAACTCTGTTACGAGATTCTGAAGGTTGCAGTAGAACCTAGTGGAGCAATAGGCCTCGCAGCTGTTTTATCTGATAGTTTCAAGAACAATCCTGCATGGAAGGATTGTACCAATATAGGAATCATTCTTTCTGGAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000287 GO:0002237 GO:0003674 GO:0003824 GO:0003941 GO:0005488 GO:0005509 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006090 GO:0006520 GO:0006563 GO:0006564 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0008721 GO:0009058 GO:0009069 GO:0009070 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016594 GO:0016597 GO:0016829 GO:0016840 GO:0016841 GO:0016853 GO:0016854 GO:0016855 GO:0017076 GO:0017144 GO:0018114 GO:0019752 GO:0019842 GO:0019904 GO:0022607 GO:0030165 GO:0030170 GO:0030378 GO:0030554 GO:0031406 GO:0032496 GO:0032553 GO:0032555 GO:0032559 GO:0032787 GO:0033993 GO:0035639 GO:0036094 GO:0036361 GO:0036477 GO:0042165 GO:0042221 GO:0042802 GO:0042803 GO:0042866 GO:0043025 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043207 GO:0043436 GO:0043621 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046416 GO:0046437 GO:0046872 GO:0046983 GO:0047661 GO:0048037 GO:0050662 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051704 GO:0051707 GO:0065003 GO:0070178 GO:0070179 GO:0070279 GO:0071704 GO:0071840 GO:0072330 GO:0097159 GO:0097367 GO:0097458 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00260 ko01100 map00260 map01100
Pfam Domains
Protein Families
PALP

Protein Analysis

305

Amino Acids

32.71

Weight (kDa)

7.08

Isoelectric Point (pI)

32.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 73 - 304 2.3e-58 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 746
Acc36I ACCTGC 1 cut(s) 122
Acc65I GGTACC 1 cut(s) 458
AccB1I GGYRCC 1 cut(s) 458
AcoI YGGCCR 3 cut(s) 334, 451, 713
AcsI RAATTY 2 cut(s) 58, 212
AcuI CTGAAG 1 cut(s) 821
AfaI GTAC 4 cut(s) 379, 393, 460, 889
AfiI CCNNNNNNNGG 1 cut(s) 524
AgsI TTSAA 2 cut(s) 57, 862
AjnI CCWGG 3 cut(s) 336, 453, 710
AluBI AGCT 7 cut(s) 180, 557, 611, 623, 638, 692, 842
AluI AGCT 7 cut(s) 180, 557, 611, 623, 638, 692, 842
Alw26I GTCTC 1 cut(s) 656
AoxI GGCC 4 cut(s) 334, 451, 713, 832
ApeKI GCWGC 9 cut(s) 106, 230, 233, 248, 383, 557, 593, 620, 839
ApoI RAATTY 2 cut(s) 58, 212
Asp718I GGTACC 1 cut(s) 458
AspLEI GCGC 4 cut(s) 52, 70, 410, 441
AsuHPI GGTGA 2 cut(s) 28, 185
AxyI CCTNAGG 1 cut(s) 603
BalI TGGCCA 3 cut(s) 336, 453, 715
BanI GGYRCC 1 cut(s) 458
BanII GRGCYC 1 cut(s) 148
BbvI GCAGC 9 cut(s) 93, 217, 235, 245, 395, 544, 580, 632, 851
BccI CCATC 4 cut(s) 153, 575, 674, 731
BceAI ACGGC 1 cut(s) 64
BciT130I CCWGG 3 cut(s) 338, 455, 712
BclI TGATCA 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 656
BfaI CTAG 2 cut(s) 177, 819
BfmI CTRYAG 4 cut(s) 231, 381, 672, 750
BfoI RGCGCY 2 cut(s) 53, 71
BfuAI ACCTGC 1 cut(s) 122
BglII AGATCT 2 cut(s) 703, 727
BisI GCNGC 9 cut(s) 107, 231, 234, 249, 384, 558, 594, 621, 840
BlsI GCNGC 9 cut(s) 108, 232, 235, 250, 385, 559, 595, 622, 841
BmcAI AGTACT 1 cut(s) 379
Bme1390I CCNGG 3 cut(s) 338, 455, 712
BmiI GGNNCC 1 cut(s) 460
BmrFI CCNGG 3 cut(s) 338, 455, 712
BmsI GCATC 2 cut(s) 493, 607
BpmI CTGGAG 1 cut(s) 367
BsaBI GATNNNNATC 1 cut(s) 98
BsaI GGTCTC 1 cut(s) 656
BsaJI CCNNGG 2 cut(s) 387, 454
Bsc4I CCNNNNNNNGG 1 cut(s) 524
Bse1I ACTGG 1 cut(s) 409
Bse21I CCTNAGG 1 cut(s) 603
Bse3DI GCAATG 2 cut(s) 81, 783
Bse8I GATNNNNATC 1 cut(s) 98
BseBI CCWGG 3 cut(s) 338, 455, 712
BseDI CCNNGG 2 cut(s) 387, 454
BseGI GGATG 2 cut(s) 164, 421
BseJI GATNNNNATC 1 cut(s) 98
BseLI CCNNNNNNNGG 1 cut(s) 524
BseMI GCAATG 2 cut(s) 81, 783
BseMII CTCAG 2 cut(s) 594, 651
BseNI ACTGG 1 cut(s) 409
BseXI GCAGC 9 cut(s) 93, 217, 235, 245, 395, 544, 580, 632, 851
BshFI GGCC 4 cut(s) 336, 453, 715, 834
BshNI GGYRCC 1 cut(s) 458
BslI CCNNNNNNNGG 1 cut(s) 524
BsmAI GTCTC 1 cut(s) 656
BsnI GGCC 4 cut(s) 336, 453, 715, 834
Bso31I GGTCTC 1 cut(s) 656
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 3 cut(s) 99, 703, 727
BspANI GGCC 4 cut(s) 336, 453, 715, 834
BspCNI CTCAG 2 cut(s) 595, 652
BspHI TCATGA 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 460
BspMAI CTGCAG 2 cut(s) 235, 385
BspMI ACCTGC 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 458
BspTNI GGTCTC 1 cut(s) 656
BsrDI GCAATG 2 cut(s) 81, 783
BsrI ACTGG 1 cut(s) 409
BssECI CCNNGG 2 cut(s) 387, 454
BssMI GATC 3 cut(s) 99, 703, 727
BssT1I CCWWGG 1 cut(s) 387
Bst2UI CCWGG 3 cut(s) 338, 455, 712
Bst4CI ACNGT 3 cut(s) 332, 673, 751
Bst6I CTCTTC 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 3 cut(s) 561, 603, 660
BstEII GGTNACC 1 cut(s) 221
BstF5I GGATG 2 cut(s) 164, 421
BstH2I RGCGCY 2 cut(s) 53, 71
BstHHI GCGC 4 cut(s) 52, 70, 410, 441
BstKTI GATC 3 cut(s) 102, 706, 730
BstMAI GTCTC 1 cut(s) 656
BstMBI GATC 3 cut(s) 99, 703, 727
BstMWI GCNNNNNNNGC 4 cut(s) 76, 361, 557, 617
BstNI CCWGG 3 cut(s) 338, 455, 712
BstPI GGTNACC 1 cut(s) 221
BstSCI CCNGG 3 cut(s) 336, 453, 710
BstSFI CTRYAG 4 cut(s) 231, 381, 672, 750
BstV1I GCAGC 9 cut(s) 93, 217, 235, 245, 395, 544, 580, 632, 851
BstX2I RGATCY 2 cut(s) 703, 727
BstXI CCANNNNNNTGG 1 cut(s) 469
BstYI RGATCY 2 cut(s) 703, 727
Bsu36I CCTNAGG 1 cut(s) 603
BsuRI GGCC 4 cut(s) 336, 453, 715, 834
BtsCI GGATG 2 cut(s) 164, 421
BtsIMutI CAGTG 1 cut(s) 669
BveI ACCTGC 1 cut(s) 122
Cac8I GCNNGC 1 cut(s) 72
CciI TCATGA 1 cut(s) 37
CfoI GCGC 4 cut(s) 52, 70, 410, 441
Csp6I GTAC 4 cut(s) 378, 392, 459, 888
CspCI CAANNNNNGTGG 2 cut(s) 199, 234
CviAII CATG 4 cut(s) 38, 227, 322, 876
CviQI GTAC 4 cut(s) 378, 392, 459, 888
DdeI CTNAG 3 cut(s) 561, 603, 660
DpnI GATC 3 cut(s) 101, 705, 729
DpnII GATC 3 cut(s) 99, 703, 727
EaeI YGGCCR 3 cut(s) 334, 451, 713
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 387
Eco147I AGGCCT 1 cut(s) 834
Eco24I GRGCYC 1 cut(s) 148
Eco31I GGTCTC 1 cut(s) 656
Eco32I GATATC 1 cut(s) 540
Eco57I CTGAAG 1 cut(s) 821
Eco81I CCTNAGG 1 cut(s) 603
Eco91I GGTNACC 1 cut(s) 221
EcoO65I GGTNACC 1 cut(s) 221
EcoRII CCWGG 3 cut(s) 336, 453, 710
EcoRV GATATC 1 cut(s) 540
EcoT14I CCWWGG 1 cut(s) 387
EcoT38I GRGCYC 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 4 cut(s) 41, 230, 325, 879
FatI CATG 4 cut(s) 37, 226, 321, 875
FbaI TGATCA 1 cut(s) 99
Fnu4HI GCNGC 9 cut(s) 107, 231, 234, 249, 384, 558, 594, 621, 840
FokI GGATG 2 cut(s) 171, 408
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 9 cut(s) 107, 231, 234, 249, 384, 558, 594, 621, 840
FspBI CTAG 2 cut(s) 177, 819
GlaI GCGC 4 cut(s) 51, 69, 409, 440
GluI GCNGC 9 cut(s) 107, 231, 234, 249, 384, 558, 594, 621, 840
GsuI CTGGAG 1 cut(s) 367
HaeII RGCGCY 2 cut(s) 53, 71
HaeIII GGCC 4 cut(s) 336, 453, 715, 834
HhaI GCGC 4 cut(s) 52, 70, 410, 441
Hin1II CATG 4 cut(s) 41, 230, 325, 879
Hin6I GCGC 4 cut(s) 50, 68, 408, 439
HinP1I GCGC 4 cut(s) 50, 68, 408, 439
HinfI GANTC 2 cut(s) 796, 900
HphI GGTGA 2 cut(s) 28, 185
Hpy188I TCNGA 6 cut(s) 64, 158, 661, 708, 801, 853
Hpy188III TCNNGA 4 cut(s) 38, 346, 862, 912
HpyAV CCTTC 3 cut(s) 636, 796, 874
HpyCH4III ACNGT 3 cut(s) 332, 673, 751
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 361, 557, 617
HpyF3I CTNAG 3 cut(s) 561, 603, 660
Hsp92II CATG 4 cut(s) 41, 230, 325, 879
HspAI GCGC 4 cut(s) 50, 68, 408, 439
KpnI GGTACC 1 cut(s) 462
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 3 cut(s) 99, 703, 727
LmnI GCTCC 4 cut(s) 301, 481, 608, 824
Lsp1109I GCAGC 9 cut(s) 93, 217, 235, 245, 395, 544, 580, 632, 851
LweI GCATC 2 cut(s) 493, 607
MaeI CTAG 2 cut(s) 177, 819
MaeIII GTNAC 3 cut(s) 221, 326, 788
MalI GATC 3 cut(s) 101, 705, 729
MboI GATC 3 cut(s) 99, 703, 727
MboII GAAGA 3 cut(s) 131, 145, 407
MflI RGATCY 2 cut(s) 703, 727
MhlI GDGCHC 1 cut(s) 148
MlsI TGGCCA 3 cut(s) 336, 453, 715
MluCI AATT 2 cut(s) 58, 212
MluNI TGGCCA 3 cut(s) 336, 453, 715
MnlI CCTC 7 cut(s) 58, 217, 363, 521, 598, 748, 845
Mox20I TGGCCA 3 cut(s) 336, 453, 715
MscI TGGCCA 3 cut(s) 336, 453, 715
MseI TTAA 1 cut(s) 476
MslI CAYNNNNRTG 1 cut(s) 501
Msp20I TGGCCA 3 cut(s) 336, 453, 715
MspA1I CMGCKG 1 cut(s) 842
MspR9I CCNGG 3 cut(s) 338, 455, 712
MvaI CCWGG 3 cut(s) 338, 455, 712
MwoI GCNNNNNNNGC 4 cut(s) 76, 361, 557, 617
NdeII GATC 3 cut(s) 99, 703, 727
NlaIII CATG 4 cut(s) 41, 230, 325, 879
NlaIV GGNNCC 1 cut(s) 460
PagI TCATGA 1 cut(s) 37
PceI AGGCCT 1 cut(s) 834
PfeI GAWTC 2 cut(s) 796, 900
PkrI GCNGC 9 cut(s) 108, 232, 235, 250, 385, 559, 595, 622, 841
PsiI TTATAA 1 cut(s) 746
Psp6I CCWGG 3 cut(s) 336, 453, 710
PspEI GGTNACC 1 cut(s) 221
PspGI CCWGG 3 cut(s) 336, 453, 710
PspN4I GGNNCC 1 cut(s) 460
PstI CTGCAG 2 cut(s) 235, 385
PsuI RGATCY 2 cut(s) 703, 727
PvuII CAGCTG 1 cut(s) 842
RsaI GTAC 4 cut(s) 379, 393, 460, 889
RsaNI GTAC 4 cut(s) 378, 392, 459, 888
RseI CAYNNNNRTG 1 cut(s) 501
SaqAI TTAA 1 cut(s) 476
SatI GCNGC 9 cut(s) 107, 231, 234, 249, 384, 558, 594, 621, 840
Sau3AI GATC 3 cut(s) 99, 703, 727
ScaI AGTACT 1 cut(s) 379
ScrFI CCNGG 3 cut(s) 338, 455, 712
SduI GDGCHC 1 cut(s) 148
SfaNI GCATC 2 cut(s) 493, 607
SfcI CTRYAG 4 cut(s) 231, 381, 672, 750
SmiMI CAYNNNNRTG 1 cut(s) 501
Sse9I AATT 2 cut(s) 58, 212
SseBI AGGCCT 1 cut(s) 834
SspMI CTAG 2 cut(s) 177, 819
StuI AGGCCT 1 cut(s) 834
StyD4I CCNGG 3 cut(s) 336, 453, 710
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 3 cut(s) 332, 673, 751
TaqI TCGA 4 cut(s) 368, 583, 688, 735
TasI AATT 2 cut(s) 58, 212
TatI WGTACW 1 cut(s) 377
TfiI GAWTC 2 cut(s) 796, 900
Tru1I TTAA 1 cut(s) 476
Tru9I TTAA 1 cut(s) 476
TscAI CASTG 1 cut(s) 676
TseI GCWGC 9 cut(s) 106, 230, 233, 248, 383, 557, 593, 620, 839
TspDTI ATGAA 2 cut(s) 26, 794
TspRI CASTG 1 cut(s) 676
XapI RAATTY 2 cut(s) 58, 212
XspI CTAG 2 cut(s) 177, 819
ZrmI AGTACT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.