Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007687

Physical Location & Seq

Genomic Coordinates Reverse (-)

7227971 .. 7229993

Gene Structure 2023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G12060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCGGCTCACTCTTCTTGCAACTTTGCTTTGACGAATCCGATCATCTCACAAATCGATTCTTTCTCTAAGAAGAAACTATCTGTTCCATTATACTTCTTCTCTACAAGAAAAGCATTGACGAATCCTTGGTTAGGCGTTGTTGATTCATCCCTCTCTCTCACTTCTCCAGTCTCCGCTCTACAAACTAATCGCCCAAGAAGAATCCATAAATCCGCCATCTCCAGCTTACCCACCGCGAATCCAGATTTAGTGGTTTCTGATGCGAAAAAGCCCAAATGGTCATGGAGGGCAATTAAATCATTTGCAATGGGAGAGCTTGAAGCTAGGAAGCTCAAGTATCCAAATACTGGAACTGAAGCACTTCTCATGGGTATTTTGATTGAAGGAACTAGTTTTACTTCAAAGTTTTTGCGGGCGAATAAGATTATGCTTTACAAAGTGCGTGAAGAAACGGTCAAGTTACTAGGAAAGGCAGATATGTATTTCTTTAGCCCGGAACATCCTCCTTTAACTGAAGATGCTCAAAGAGCACTTGACTCTGCTCTGGATCAGAATCTAAAAGCAGGTGGTATCGGGGAAGTAATGCCAGCACATATACTACTTGGGATTTGGTCTGAAGTTGAATCTCCAGGTCACAAGATACTGGCAACTCTTGGTTTCACTGATGAGAAATCTAAAGAGTTAGAGTCTTTTGCCTCTGAATCTGGCTTTTTAGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0019899 GO:0019900 GO:0019901 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clp_N

Protein Analysis

241

Amino Acids

26.56

Weight (kDa)

8.85

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clp_N	PF02861	105 - 217	2e-09	Clp repeat (R) N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12060
fragaria_vesca	FvH4_5g00880
malus_domestica	MD06G1067100.v1.1 MD17G1137600.v1.1
prunus_persica	Prupe.5G082000_v2.0.a1 Prupe.5G082000_v2.0.a1
pyrus_communis	pycom04g06840 pycom06g06470
rosa_chinensis	RchiOBHm_Chr7g0200491 RchiOBHm_Chr7g0200901
rosa_laevigata	RLG00000003721
rosa_multiflora	Rmu_sc0000617.1_g000023 Rmu_sc0000708.1_g000019
rosa_roxburghii	Rroxscaffold_3G00255920
rosa_rugosa	Rorug07G0060500 Rorug07G0060500
rosa_samantha	Rh7AG186300 Rh7BG189100 Rh7CG196400 Rh7CG196900 Rh7DG190300 Rh7DG192200
rosa_wichuraiana	Rw7G016320 Rw7G016400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	557
Acc36I	ACCTGC	1 cut(s)	557
AccB7I	CCANNNNNTGG	1 cut(s)	350
AccBSI	CCGCTC	1 cut(s)	179
AccII	CGCG	1 cut(s)	239
AciI	CCGC	5 cut(s)	5, 177, 216, 237, 415
AclWI	GGATC	1 cut(s)	558
AcuI	CTGAAG	3 cut(s)	378, 537, 639
AfiI	CCNNNNNNNGG	2 cut(s)	134, 350
AgsI	TTSAA	4 cut(s)	323, 386, 405, 626
AhlI	ACTAGT	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	631
AluBI	AGCT	4 cut(s)	228, 319, 326, 334
AluI	AGCT	4 cut(s)	228, 319, 326, 334
Alw21I	GWGCWC	1 cut(s)	535
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	1 cut(s)	558
Asp700I	GAANNNNTTC	1 cut(s)	363
AsuC2I	CCSGG	1 cut(s)	497
Bbv12I	GWGCWC	1 cut(s)	535
BccI	CCATC	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	633
BciVI	GTATCC	1 cut(s)	351
BcnI	CCSGG	1 cut(s)	497
BcoDI	GTCTC	1 cut(s)	178
BcuI	ACTAGT	1 cut(s)	392
BfaI	CTAG	3 cut(s)	327, 393, 467
BfuAI	ACCTGC	1 cut(s)	557
BfuI	GTATCC	1 cut(s)	351
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	497, 633
BmrFI	CCNGG	2 cut(s)	497, 633
BmsI	GCATC	2 cut(s)	253, 511
BpmI	CTGGAG	3 cut(s)	153, 208, 615
BpuEI	CTTGAG	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	497
Bsa29I	ATCGAT	1 cut(s)	57
BsaBI	GATNNNNATC	1 cut(s)	555
BsaJI	CCNNGG	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 350
Bse1I	ACTGG	3 cut(s)	170, 355, 651
Bse3DI	GCAATG	1 cut(s)	315
Bse8I	GATNNNNATC	1 cut(s)	555
BseBI	CCWGG	1 cut(s)	633
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	128
BseGI	GGATG	2 cut(s)	149, 502
BseJI	GATNNNNATC	1 cut(s)	555
BseLI	CCNNNNNNNGG	2 cut(s)	134, 350
BseMI	GCAATG	1 cut(s)	315
BseNI	ACTGG	3 cut(s)	170, 355, 651
Bsh1236I	CGCG	1 cut(s)	239
BshVI	ATCGAT	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	535
BsiSI	CCGG	1 cut(s)	497
BslI	CCNNNNNNNGG	2 cut(s)	134, 350
BsmAI	GTCTC	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	535
Bsp143I	GATC	2 cut(s)	42, 550
BspACI	CCGC	5 cut(s)	5, 177, 216, 237, 415
BspDI	ATCGAT	1 cut(s)	57
BspFNI	CGCG	1 cut(s)	239
BspMI	ACCTGC	1 cut(s)	557
BspPI	GGATC	1 cut(s)	558
BsrBI	CCGCTC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	315
BsrI	ACTGG	3 cut(s)	170, 355, 651
BssECI	CCNNGG	1 cut(s)	128
BssMI	GATC	2 cut(s)	42, 550
BssT1I	CCWWGG	1 cut(s)	128
Bst2UI	CCWGG	1 cut(s)	633
Bst4CI	ACNGT	1 cut(s)	457
Bst6I	CTCTTC	1 cut(s)	19
BstC8I	GCNNGC	2 cut(s)	417, 591
BstDEI	CTNAG	1 cut(s)	69
BstENI	CCTNNNNNAGG	1 cut(s)	132
BstF5I	GGATG	2 cut(s)	149, 502
BstFNI	CGCG	1 cut(s)	239
BstKTI	GATC	2 cut(s)	45, 553
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	2 cut(s)	42, 550
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNI	CCWGG	1 cut(s)	633
BstSCI	CCNGG	2 cut(s)	495, 631
BstUI	CGCG	1 cut(s)	239
Bsu15I	ATCGAT	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	351
BsuTUI	ATCGAT	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	149, 502
BtsIMutI	CAGTG	1 cut(s)	663
BveI	ACCTGC	1 cut(s)	557
Cac8I	GCNNGC	2 cut(s)	417, 591
ClaI	ATCGAT	1 cut(s)	57
CviAII	CATG	2 cut(s)	285, 370
CviJI	RGCY	8 cut(s)	8, 228, 274, 319, 326, 334, 495, 711
CviKI_1	RGCY	8 cut(s)	8, 228, 274, 319, 326, 334, 495, 711
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	2 cut(s)	44, 552
DpnII	GATC	2 cut(s)	42, 550
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
EciI	GGCGGA	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	128
Eco57I	CTGAAG	3 cut(s)	378, 537, 639
EcoNI	CCTNNNNNAGG	1 cut(s)	132
EcoRII	CCWGG	1 cut(s)	631
EcoT14I	CCWWGG	1 cut(s)	128
ErhI	CCWWGG	1 cut(s)	128
FaeI	CATG	2 cut(s)	288, 373
FaiI	YATR	8 cut(s)	94, 210, 286, 371, 431, 482, 597, 599
FatI	CATG	2 cut(s)	284, 369
FauI	CCCGC	1 cut(s)	408
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	2 cut(s)	136, 489
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	3 cut(s)	327, 393, 467
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	3 cut(s)	153, 208, 615
HapII	CCGG	1 cut(s)	497
Hin1II	CATG	2 cut(s)	288, 373
HpaII	CCGG	1 cut(s)	497
Hpy188I	TCNGA	5 cut(s)	42, 262, 555, 619, 703
Hpy188III	TCNNGA	2 cut(s)	245, 548
HpyAV	CCTTC	1 cut(s)	380
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4V	TGCA	2 cut(s)	21, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	288, 373
Kzo9I	GATC	2 cut(s)	42, 550
LweI	GCATC	2 cut(s)	253, 511
MaeI	CTAG	3 cut(s)	327, 393, 467
MaeIII	GTNAC	2 cut(s)	462, 635
MalI	GATC	2 cut(s)	44, 552
MbiI	CCGCTC	1 cut(s)	179
MboI	GATC	2 cut(s)	42, 550
MboII	GAAGA	6 cut(s)	6, 85, 91, 213, 461, 530
MhlI	GDGCHC	1 cut(s)	535
MluCI	AATT	1 cut(s)	294
MlyI	GAGTC	2 cut(s)	533, 698
MnlI	CCTC	4 cut(s)	164, 282, 516, 709
MroXI	GAANNNNTTC	1 cut(s)	363
MseI	TTAA	2 cut(s)	297, 512
MspI	CCGG	1 cut(s)	497
MspR9I	CCNGG	2 cut(s)	497, 633
MvaI	CCWGG	1 cut(s)	633
MvnI	CGCG	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	530
NciI	CCSGG	1 cut(s)	497
NdeII	GATC	2 cut(s)	42, 550
NlaIII	CATG	2 cut(s)	288, 373
NmuCI	GTSAC	1 cut(s)	635
PaqCI	CACCTGC	1 cut(s)	557
PdmI	GAANNNNTTC	1 cut(s)	363
PfeI	GAWTC	9 cut(s)	37, 59, 124, 146, 204, 241, 556, 626, 704
PflMI	CCANNNNNTGG	1 cut(s)	350
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	533, 697
PpsI	GAGTC	2 cut(s)	533, 697
Psp6I	CCWGG	1 cut(s)	631
PspGI	CCWGG	1 cut(s)	631
PsrI	GAACNNNNNNTAC	2 cut(s)	382, 414
SaqAI	TTAA	2 cut(s)	297, 512
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	42, 550
SchI	GAGTC	2 cut(s)	533, 698
ScrFI	CCNGG	2 cut(s)	497, 633
SduI	GDGCHC	1 cut(s)	535
SetI	ASST	6 cut(s)	230, 321, 328, 336, 571, 637
SfaNI	GCATC	2 cut(s)	253, 511
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
SpeI	ACTAGT	1 cut(s)	392
Sse9I	AATT	1 cut(s)	294
SsiI	CCGC	5 cut(s)	5, 177, 216, 237, 415
SspMI	CTAG	3 cut(s)	327, 393, 467
StyD4I	CCNGG	2 cut(s)	495, 631
StyI	CCWWGG	1 cut(s)	128
TaaI	ACNGT	1 cut(s)	457
TaqI	TCGA	1 cut(s)	57
TasI	AATT	1 cut(s)	294
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	9 cut(s)	37, 59, 124, 146, 204, 241, 556, 626, 704
Tru1I	TTAA	2 cut(s)	297, 512
Tru9I	TTAA	2 cut(s)	297, 512
TscAI	CASTG	1 cut(s)	670
TseFI	GTSAC	1 cut(s)	635
Tsp45I	GTSAC	1 cut(s)	635
TspDTI	ATGAA	1 cut(s)	138
TspRI	CASTG	1 cut(s)	670
Van91I	CCANNNNNTGG	1 cut(s)	350
XagI	CCTNNNNNAGG	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	363
XspI	CTAG	3 cut(s)	327, 393, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.