Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007687

Physical Location & Seq

Genomic Coordinates Forward (+)

10212559 .. 10212880

Gene Structure 322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g06470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGCCCTTCACTCCCTCTCCAAGCTTCCAACGACCACCTCCGCCCTGATCCCCAGAACTGAACCCGACCCCACTTCGAGACCCAGCAATTTGCAGAGCCCATGGCTGAGCGCCAACAGCCTCTCGCTTCCGCCCCCGAGCCTCAGAGTCAGAACCCAAGAGCCGAAGCTCCACCGTTTCTCCGCCACCGTCTATCTCAGCCTCCCTACCGCATGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0019899 GO:0019900 GO:0019901 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clp_N

Protein Analysis

74

Amino Acids

8.01

Weight (kDa)

10.27

Isoelectric Point (pI)

65.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12060
fragaria_vesca	FvH4_5g00880
malus_domestica	MD06G1067100.v1.1 MD17G1137600.v1.1
prunus_persica	Prupe.5G082000_v2.0.a1 Prupe.5G082000_v2.0.a1
pyrus_communis	pycom04g06840 pycom06g06470
rosa_chinensis	RchiOBHm_Chr7g0200491 RchiOBHm_Chr7g0200901
rosa_laevigata	RLG00000003721
rosa_multiflora	Rmu_sc0000617.1_g000023 Rmu_sc0000708.1_g000019
rosa_roxburghii	Rroxscaffold_3G00255920
rosa_rugosa	Rorug07G0060500 Rorug07G0060500
rosa_samantha	Rh7AG186300 Rh7BG189100 Rh7CG196400 Rh7CG196900 Rh7DG190300 Rh7DG192200
rosa_wichuraiana	Rw7G016320 Rw7G016400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	42, 131, 183, 210
AclWI	GGATC	1 cut(s)	43
AluBI	AGCT	2 cut(s)	25, 169
AluI	AGCT	2 cut(s)	25, 169
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	1 cut(s)	43
Ama87I	CYCGRG	1 cut(s)	136
AoxI	GGCC	1 cut(s)	3
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	4
AvaI	CYCGRG	1 cut(s)	136
BanII	GRGCYC	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	73
BfoI	RGCGCY	1 cut(s)	114
BlpI	GCTNAGC	1 cut(s)	107
BmeT110I	CYCGRG	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	4
Bpu1102I	GCTNAGC	1 cut(s)	107
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	1 cut(s)	101
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 164, 194
BseDI	CCNNGG	1 cut(s)	101
BseMII	CTCAG	3 cut(s)	98, 157, 211
BseYI	CCCAGC	1 cut(s)	83
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	136
BsmAI	GTCTC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	73
BsoBI	CYCGRG	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	1 cut(s)	48
Bsp1720I	GCTNAGC	1 cut(s)	107
Bsp19I	CCATGG	1 cut(s)	101
BspACI	CCGC	4 cut(s)	42, 131, 183, 210
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	99, 156, 210
BspPI	GGATC	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	101
BssMI	GATC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	101
Bst4CI	ACNGT	2 cut(s)	176, 190
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	3 cut(s)	107, 143, 197
BstDSI	CCRYGG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	1 cut(s)	51
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	101
Cac8I	GCNNGC	1 cut(s)	214
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	2 cut(s)	102, 213
CviJI	RGCY	9 cut(s)	5, 25, 99, 106, 120, 141, 163, 169, 201
CviKI_1	RGCY	9 cut(s)	5, 25, 99, 106, 120, 141, 163, 169, 201
DdeI	CTNAG	3 cut(s)	107, 143, 197
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
EciI	GGCGGA	3 cut(s)	31, 120, 172
Eco130I	CCWWGG	1 cut(s)	101
Eco24I	GRGCYC	1 cut(s)	101
Eco31I	GGTCTC	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	101
FaeI	CATG	2 cut(s)	105, 216
FaiI	YATR	2 cut(s)	103, 214
FatI	CATG	2 cut(s)	101, 212
FriOI	GRGCYC	1 cut(s)	101
GlaI	GCGC	1 cut(s)	112
GsaI	CCCAGC	1 cut(s)	87
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	2 cut(s)	105, 216
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	1 cut(s)	147
Hpy188I	TCNGA	3 cut(s)	146, 152, 221
Hpy188III	TCNNGA	1 cut(s)	78
HpyAV	CCTTC	1 cut(s)	17
HpyCH4III	ACNGT	2 cut(s)	176, 190
HpyCH4V	TGCA	1 cut(s)	94
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpyF3I	CTNAG	3 cut(s)	107, 143, 197
Hsp92II	CATG	2 cut(s)	105, 216
HspAI	GCGC	1 cut(s)	111
Kzo9I	GATC	1 cut(s)	48
LmnI	GCTCC	1 cut(s)	174
LpnPI	CCDG	3 cut(s)	59, 67, 97
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MhlI	GDGCHC	1 cut(s)	101
MluCI	AATT	1 cut(s)	88
MlyI	GAGTC	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	53
MnlI	CCTC	5 cut(s)	26, 49, 131, 152, 212
MwoI	GCNNNNNNNGC	1 cut(s)	117
NcoI	CCATGG	1 cut(s)	101
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	2 cut(s)	105, 216
NspI	RCATGY	1 cut(s)	216
PaeI	GCATGC	1 cut(s)	216
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PspFI	CCCAGC	1 cut(s)	83
PspPI	GGNCC	1 cut(s)	4
Sau3AI	GATC	1 cut(s)	48
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	156
SduI	GDGCHC	1 cut(s)	101
SetI	ASST	3 cut(s)	27, 41, 171
SphI	GCATGC	1 cut(s)	216
Sse9I	AATT	1 cut(s)	88
SsiI	CCGC	4 cut(s)	42, 131, 183, 210
StyI	CCWWGG	1 cut(s)	101
TaaI	ACNGT	2 cut(s)	176, 190
TaqI	TCGA	1 cut(s)	77
TasI	AATT	1 cut(s)	88
XceI	RCATGY	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.