Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0007687

Physical Location & Seq

Genomic Coordinates Reverse (-)

7106036 .. 7108310

Gene Structure 2275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g06840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTGCTTCTTGTTTGAAGCATTTCAAAACTTTGGGTTGAAGGCCAGCCCAATCCATATACAACCACAGGGAACGACGCCCTGTTCTTCATCCTATCTCATATCCTTCCGCCTATCCAATTCAACACTGAAGCACCATATTGTTCCACAAATGGCCGCTCACTCTCTCTCCAAGCTTCCAACGACCATCTCCGCCCTCATCCCCGATCACAGAACTAAATCCGATTCAAGACCCAACAGTTTGCTGAGCCCATGGCTGGGTGCCAACAGCCTTTCGCTTCCGCCCTCAAGTCTGAGAGTCAGAACCCAAGAGTCAAAGCTCCACCCTTTCTCAGCCACCGTCTGTCTCAGCCTCCCCACCGCAAATGCGGGAATAGTTTCTTCCACTGAGAAAGTGCCCAAGTGGTCTTGGAGGGCTATAAAGTCATTTGCCATGGGTGAATTAGAAGCCAGGAAGCTCAAGTTTGCAACTACCGGGACTGAAGCAATTCTCATGGGGATCCTCATTGAGGGAACTAGTCTGGCGGCAAAATTTTTACGGGTAAATGGAATTACACTTACTAAGGTGCGTGAAGAAACAATCAAGTTGCTCGGGAAAGCCGACATGTGGTTTTTCAGTCCTGAGCATCCAGCATTGACTGAGGAAGCTCAAAGAGTACTTGATTGGGCTGTTGATAAAAAGAAAAAATCTGGTAATAGTGGGGAAATTACAACTTCTCATCTGCTTCTTGGCATTTGGTATGAAGGGGAATCTCCGGGTCACAAGATATTGGCTGGCCTTGGCTTCAATGAAGAAAAAGCGAAGGAGCTGGAGTCTTTAAGTACTAAACCTGGATTCATCGACGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0019899 GO:0019900 GO:0019901 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clp_N

Protein Analysis

283

Amino Acids

30.85

Weight (kDa)

9.3

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12060
fragaria_vesca	FvH4_5g00880
malus_domestica	MD06G1067100.v1.1 MD17G1137600.v1.1
prunus_persica	Prupe.5G082000_v2.0.a1 Prupe.5G082000_v2.0.a1
pyrus_communis	pycom04g06840 pycom06g06470
rosa_chinensis	RchiOBHm_Chr7g0200491 RchiOBHm_Chr7g0200901
rosa_laevigata	RLG00000003721
rosa_multiflora	Rmu_sc0000617.1_g000023 Rmu_sc0000708.1_g000019
rosa_roxburghii	Rroxscaffold_3G00255920
rosa_rugosa	Rorug07G0060500 Rorug07G0060500
rosa_samantha	Rh7AG186300 Rh7BG189100 Rh7CG196400 Rh7CG196900 Rh7DG190300 Rh7DG192200
rosa_wichuraiana	Rw7G016320 Rw7G016400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	260
AccBSI	CCGCTC	1 cut(s)	158
AciI	CCGC	7 cut(s)	109, 156, 192, 281, 360, 368, 524
AclWI	GGATC	2 cut(s)	493, 506
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	530
AcuI	CTGAAG	2 cut(s)	149, 501
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	2 cut(s)	657, 823
AfiI	CCNNNNNNNGG	4 cut(s)	256, 257, 508, 606
AflIII	ACRYGT	1 cut(s)	603
AgsI	TTSAA	6 cut(s)	17, 26, 40, 123, 228, 787
AhlI	ACTAGT	1 cut(s)	515
AjnI	CCWGG	2 cut(s)	449, 829
AluBI	AGCT	5 cut(s)	175, 319, 457, 647, 808
AluI	AGCT	5 cut(s)	175, 319, 457, 647, 808
Alw26I	GTCTC	1 cut(s)	350
AlwI	GGATC	2 cut(s)	493, 506
Ama87I	CYCGRG	1 cut(s)	590
AoxI	GGCC	3 cut(s)	42, 153, 775
ApoI	RAATTY	1 cut(s)	530
Asp700I	GAANNNNTTC	3 cut(s)	21, 376, 486
AsuC2I	CCSGG	2 cut(s)	475, 756
AsuHPI	GGTGA	1 cut(s)	449
AvaI	CYCGRG	1 cut(s)	590
BaeGI	GKGCMC	1 cut(s)	399
BamHI	GGATCC	1 cut(s)	498
BanI	GGYRCC	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	251
BccI	CCATC	1 cut(s)	194
BciT130I	CCWGG	2 cut(s)	451, 831
BcnI	CCSGG	2 cut(s)	475, 756
BcoDI	GTCTC	1 cut(s)	350
BcuI	ACTAGT	1 cut(s)	515
BfaI	CTAG	1 cut(s)	516
BisI	GCNGC	2 cut(s)	156, 525
BlpI	GCTNAGC	1 cut(s)	245
BlsI	GCNGC	2 cut(s)	157, 526
BmcAI	AGTACT	2 cut(s)	657, 823
Bme1390I	CCNGG	4 cut(s)	451, 475, 756, 831
BmeT110I	CYCGRG	1 cut(s)	590
BmiI	GGNNCC	2 cut(s)	262, 500
BmrFI	CCNGG	4 cut(s)	451, 475, 756, 831
BmsI	GCATC	1 cut(s)	634
BpmI	CTGGAG	1 cut(s)	830
Bpu10I	CCTNAGC	1 cut(s)	621
Bpu1102I	GCTNAGC	1 cut(s)	245
BpuEI	CTTGAG	2 cut(s)	271, 443
BpuMI	CCSGG	2 cut(s)	475, 756
BsaHI	GRCGYC	1 cut(s)	77
BsaJI	CCNNGG	3 cut(s)	251, 432, 778
BsaXI	ACNNNNNCTCC	4 cut(s)	152, 182, 797, 827
Bsc4I	CCNNNNNNNGG	4 cut(s)	256, 257, 508, 606
BseBI	CCWGG	2 cut(s)	451, 831
BseDI	CCNNGG	3 cut(s)	251, 432, 778
BseGI	GGATG	3 cut(s)	89, 198, 625
BseLI	CCNNNNNNNGG	4 cut(s)	256, 257, 508, 606
BseMII	CTCAG	7 cut(s)	236, 284, 345, 361, 378, 612, 630
BseSI	GKGCMC	1 cut(s)	399
BseYI	CCCAGC	1 cut(s)	256
BshFI	GGCC	3 cut(s)	44, 155, 777
BshNI	GGYRCC	1 cut(s)	260
BsiHKCI	CYCGRG	1 cut(s)	590
BsiSI	CCGG	2 cut(s)	474, 755
BslFI	GGGAC	1 cut(s)	490
BslI	CCNNNNNNNGG	4 cut(s)	256, 257, 508, 606
BsmAI	GTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	490
BsnI	GGCC	3 cut(s)	44, 155, 777
BsoBI	CYCGRG	1 cut(s)	590
Bsp1286I	GDGCHC	2 cut(s)	251, 399
Bsp143I	GATC	2 cut(s)	205, 498
Bsp1720I	GCTNAGC	1 cut(s)	245
Bsp19I	CCATGG	2 cut(s)	251, 432
BspACI	CCGC	7 cut(s)	109, 156, 192, 281, 360, 368, 524
BspANI	GGCC	3 cut(s)	44, 155, 777
BspCNI	CTCAG	7 cut(s)	237, 285, 344, 360, 379, 613, 631
BspLI	GGNNCC	2 cut(s)	262, 500
BspPI	GGATC	2 cut(s)	493, 506
BspT107I	GGYRCC	1 cut(s)	260
BsrBI	CCGCTC	1 cut(s)	158
BssECI	CCNNGG	3 cut(s)	251, 432, 778
BssMI	GATC	2 cut(s)	205, 498
BssNI	GRCGYC	1 cut(s)	77
BssT1I	CCWWGG	3 cut(s)	251, 432, 778
Bst2UI	CCWGG	2 cut(s)	451, 831
Bst4CI	ACNGT	2 cut(s)	239, 340
BstACI	GRCGYC	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	46, 775
BstDEI	CTNAG	8 cut(s)	245, 293, 331, 347, 387, 561, 621, 639
BstDSI	CCRYGG	2 cut(s)	251, 432
BstENI	CCTNNNNNAGG	1 cut(s)	506
BstF5I	GGATG	3 cut(s)	89, 198, 625
BstKTI	GATC	2 cut(s)	208, 501
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	2 cut(s)	205, 498
BstNI	CCWGG	2 cut(s)	451, 831
BstNSI	RCATGY	1 cut(s)	607
BstSCI	CCNGG	4 cut(s)	449, 473, 754, 829
BstSLI	GKGCMC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	498
BstYI	RGATCY	1 cut(s)	498
BsuRI	GGCC	3 cut(s)	44, 155, 777
BtgI	CCRYGG	2 cut(s)	251, 432
BtsCI	GGATG	3 cut(s)	89, 198, 625
BtsIMutI	CAGTG	2 cut(s)	125, 384
Cac8I	GCNNGC	2 cut(s)	46, 775
CseI	GACGC	1 cut(s)	85
Csp6I	GTAC	2 cut(s)	656, 822
CviAII	CATG	4 cut(s)	252, 433, 493, 604
CviQI	GTAC	2 cut(s)	656, 822
DdeI	CTNAG	8 cut(s)	245, 293, 331, 347, 387, 561, 621, 639
DpnI	GATC	2 cut(s)	207, 500
DpnII	GATC	2 cut(s)	205, 498
EaeI	YGGCCR	1 cut(s)	153
EciI	GGCGGA	3 cut(s)	98, 181, 270
Eco130I	CCWWGG	3 cut(s)	251, 432, 778
Eco24I	GRGCYC	1 cut(s)	251
Eco57I	CTGAAG	2 cut(s)	149, 501
Eco88I	CYCGRG	1 cut(s)	590
EcoNI	CCTNNNNNAGG	1 cut(s)	506
EcoRII	CCWGG	2 cut(s)	449, 829
EcoT14I	CCWWGG	3 cut(s)	251, 432, 778
EcoT38I	GRGCYC	1 cut(s)	251
ErhI	CCWWGG	3 cut(s)	251, 432, 778
FaeI	CATG	4 cut(s)	255, 436, 496, 607
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	4 cut(s)	251, 432, 492, 603
FauI	CCCGC	1 cut(s)	361
Fnu4HI	GCNGC	2 cut(s)	156, 525
FokI	GGATG	3 cut(s)	76, 185, 612
FriOI	GRGCYC	1 cut(s)	251
Fsp4HI	GCNGC	2 cut(s)	156, 525
FspBI	CTAG	1 cut(s)	516
GluI	GCNGC	2 cut(s)	156, 525
GsaI	CCCAGC	1 cut(s)	260
GsuI	CTGGAG	1 cut(s)	830
HaeIII	GGCC	3 cut(s)	44, 155, 777
HapII	CCGG	2 cut(s)	474, 755
HgaI	GACGC	1 cut(s)	85
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	4 cut(s)	255, 436, 496, 607
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	6 cut(s)	224, 297, 311, 749, 812, 834
HpaII	CCGG	2 cut(s)	474, 755
HphI	GGTGA	1 cut(s)	449
Hpy188I	TCNGA	3 cut(s)	223, 294, 302
Hpy188III	TCNNGA	3 cut(s)	228, 592, 620
Hpy99I	CGWCG	2 cut(s)	79, 845
HpyAV	CCTTC	4 cut(s)	34, 115, 737, 796
HpyCH4III	ACNGT	2 cut(s)	239, 340
HpyCH4V	TGCA	1 cut(s)	467
HpyF3I	CTNAG	8 cut(s)	245, 293, 331, 347, 387, 561, 621, 639
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	4 cut(s)	255, 436, 496, 607
Kzo9I	GATC	2 cut(s)	205, 498
LmnI	GCTCC	2 cut(s)	324, 805
LweI	GCATC	1 cut(s)	634
MaeI	CTAG	1 cut(s)	516
MaeIII	GTNAC	1 cut(s)	758
MalI	GATC	2 cut(s)	207, 500
MbiI	CCGCTC	1 cut(s)	158
MboI	GATC	2 cut(s)	205, 498
MboII	GAAGA	4 cut(s)	78, 372, 584, 803
MflI	RGATCY	1 cut(s)	498
MhlI	GDGCHC	2 cut(s)	251, 399
MluCI	AATT	6 cut(s)	118, 440, 486, 530, 549, 705
MlyI	GAGTC	3 cut(s)	306, 320, 821
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	7 cut(s)	206, 295, 362, 405, 502, 512, 634
MroXI	GAANNNNTTC	3 cut(s)	21, 376, 486
MseI	TTAA	1 cut(s)	818
MspI	CCGG	2 cut(s)	474, 755
MspR9I	CCNGG	4 cut(s)	451, 475, 756, 831
MvaI	CCWGG	2 cut(s)	451, 831
NciI	CCSGG	2 cut(s)	475, 756
NcoI	CCATGG	2 cut(s)	251, 432
NdeII	GATC	2 cut(s)	205, 498
NlaIII	CATG	4 cut(s)	255, 436, 496, 607
NlaIV	GGNNCC	2 cut(s)	262, 500
NmuCI	GTSAC	1 cut(s)	758
NspI	RCATGY	1 cut(s)	607
PciI	ACATGT	1 cut(s)	603
PcsI	WCGNNNNNNNCGW	1 cut(s)	597
PdmI	GAANNNNTTC	3 cut(s)	21, 376, 486
PfeI	GAWTC	3 cut(s)	224, 749, 834
PkrI	GCNGC	2 cut(s)	157, 526
PleI	GAGTC	3 cut(s)	305, 319, 820
PpsI	GAGTC	3 cut(s)	305, 319, 820
PscI	ACATGT	1 cut(s)	603
Psp6I	CCWGG	2 cut(s)	449, 829
PspFI	CCCAGC	1 cut(s)	256
PspGI	CCWGG	2 cut(s)	449, 829
PspN4I	GGNNCC	2 cut(s)	262, 500
PsuI	RGATCY	1 cut(s)	498
RsaI	GTAC	2 cut(s)	657, 823
RsaNI	GTAC	2 cut(s)	656, 822
SaqAI	TTAA	1 cut(s)	818
SatI	GCNGC	2 cut(s)	156, 525
Sau3AI	GATC	2 cut(s)	205, 498
ScaI	AGTACT	2 cut(s)	657, 823
SchI	GAGTC	3 cut(s)	306, 320, 821
ScrFI	CCNGG	4 cut(s)	451, 475, 756, 831
SduI	GDGCHC	2 cut(s)	251, 399
SetI	ASST	7 cut(s)	177, 321, 459, 567, 649, 810, 832
SfaNI	GCATC	1 cut(s)	634
SmlI	CTYRAG	2 cut(s)	286, 458
SmoI	CTYRAG	2 cut(s)	286, 458
SpeI	ACTAGT	1 cut(s)	515
Sse9I	AATT	6 cut(s)	118, 440, 486, 530, 549, 705
SsiI	CCGC	7 cut(s)	109, 156, 192, 281, 360, 368, 524
SspMI	CTAG	1 cut(s)	516
StyD4I	CCNGG	4 cut(s)	449, 473, 754, 829
StyI	CCWWGG	3 cut(s)	251, 432, 778
TaaI	ACNGT	2 cut(s)	239, 340
TaqI	TCGA	1 cut(s)	840
TasI	AATT	6 cut(s)	118, 440, 486, 530, 549, 705
TatI	WGTACW	2 cut(s)	655, 821
TauI	GCSGC	2 cut(s)	158, 527
TfiI	GAWTC	3 cut(s)	224, 749, 834
Tru1I	TTAA	1 cut(s)	818
Tru9I	TTAA	1 cut(s)	818
TscAI	CASTG	2 cut(s)	132, 391
TseFI	GTSAC	1 cut(s)	758
Tsp45I	GTSAC	1 cut(s)	758
TspDTI	ATGAA	4 cut(s)	78, 756, 804, 826
TspRI	CASTG	2 cut(s)	132, 391
XagI	CCTNNNNNAGG	1 cut(s)	506
XapI	RAATTY	1 cut(s)	530
XceI	RCATGY	1 cut(s)	607
XmnI	GAANNNNTTC	3 cut(s)	21, 376, 486
XspI	CTAG	1 cut(s)	516
ZrmI	AGTACT	2 cut(s)	657, 823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.