Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007687

Physical Location & Seq

Genomic Coordinates Forward (+)

507370 .. 509698

Gene Structure 2329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g00880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCCGCTCACTCCTTCTCCAAGCTTCCCACTTTCGTATCAGCCCTCAATCCCAATCAAACAACCAAACCGGAGTCTTATTCTCTACCTCTGACCACGACTTTGAGCCCCGCAAGTCTTCAGAAACTATGGCTCGGAACAACCAGTGTCGGAGTCAAAGCCCGACTGCCAAAGCTCCGATCTTTCTCTTCCACGATCTGCTTCAGCCTCCCGACAGCAGTCAAGGAAAGAGTTTCGTCCAATGACGAAGTGCCCAAATGGTCTAGCAGGGCTATAAAGTCATTTGCCATGGGGGAATTGGAAGCCAGGAAGCTCAAGTACCCAACTACTGGGACTGAAGCCATTCTCATGGGTATCCTCATTGAGGGAACCACTTTGGCTTCGAAATTTTTGCGGTCAAACGGAGTTACACTTTTCAAGGTGCGTGAAGAAACCGTTAAGTTACTTGGGAAAGCTGATATGTGGTTTTTCAGTCCTGAGCATCCTGCATTGACTGACGAAGCTCAAAGAGTACTGGACTGGGCTTTTGATAAGAAAATAAAATCTGGCGGCAGTGGCGAAATTACAACATCTCATCTGCTTCTTGGCATTTGGTATGAAGTTGATTCACCGGGCCAGAAGATGATGGCCACCCTTGGCTTCAATGAAGAGAAAGCGAAAGAGCTGGAGTCTTTAATTTCTGAACCTGGATTCATCGATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0019899 GO:0019900 GO:0019901 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clp_N

Protein Analysis

235

Amino Acids

25.69

Weight (kDa)

8.87

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clp_N	PF02861	88 - 209	2.1e-11	Clp repeat (R) N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12060
fragaria_vesca	FvH4_5g00880
malus_domestica	MD06G1067100.v1.1 MD17G1137600.v1.1
prunus_persica	Prupe.5G082000_v2.0.a1 Prupe.5G082000_v2.0.a1
pyrus_communis	pycom04g06840 pycom06g06470
rosa_chinensis	RchiOBHm_Chr7g0200491 RchiOBHm_Chr7g0200901
rosa_laevigata	RLG00000003721
rosa_multiflora	Rmu_sc0000617.1_g000023 Rmu_sc0000708.1_g000019
rosa_roxburghii	Rroxscaffold_3G00255920
rosa_rugosa	Rorug07G0060500 Rorug07G0060500
rosa_samantha	Rh7AG186300 Rh7BG189100 Rh7CG196400 Rh7CG196900 Rh7DG190300 Rh7DG192200
rosa_wichuraiana	Rw7G016320 Rw7G016400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	329
AccBSI	CCGCTC	1 cut(s)	8
AciI	CCGC	4 cut(s)	6, 111, 394, 549
AcoI	YGGCCR	2 cut(s)	3, 627
AcsI	RAATTY	1 cut(s)	386
AcuI	CTGAAG	3 cut(s)	104, 187, 357
AfaI	GTAC	2 cut(s)	320, 513
AfiI	CCNNNNNNNGG	2 cut(s)	329, 364
AgsI	TTSAA	2 cut(s)	418, 643
AjnI	CCWGG	2 cut(s)	305, 685
AluBI	AGCT	6 cut(s)	25, 175, 313, 455, 503, 664
AluI	AGCT	6 cut(s)	25, 175, 313, 455, 503, 664
AoxI	GGCC	3 cut(s)	3, 613, 627
ApoI	RAATTY	1 cut(s)	386
ArsI	GACNNNNNNTTYG	4 cut(s)	85, 117, 509, 541
Asp700I	GAANNNNTTC	1 cut(s)	342
AspS9I	GGNCC	1 cut(s)	613
AsuC2I	CCSGG	1 cut(s)	612
AsuHPI	GGTGA	1 cut(s)	600
AsuII	TTCGAA	1 cut(s)	383
BaeGI	GKGCMC	1 cut(s)	255
BaeI	ACNNNNGTAYC	2 cut(s)	21, 54
BalI	TGGCCA	1 cut(s)	629
BanII	GRGCYC	1 cut(s)	110
BarI	GAAGNNNNNNTAC	2 cut(s)	302, 334
BbsI	GAAGAC	1 cut(s)	110
BccI	CCATC	2 cut(s)	619, 692
BcgI	CGANNNNNNTGC	2 cut(s)	373, 407
BciT130I	CCWGG	2 cut(s)	307, 687
BciVI	GTATCC	1 cut(s)	365
BcnI	CCSGG	1 cut(s)	612
BfaI	CTAG	1 cut(s)	264
BfuI	GTATCC	1 cut(s)	365
BisI	GCNGC	2 cut(s)	6, 550
BlsI	GCNGC	2 cut(s)	7, 551
BmcAI	AGTACT	1 cut(s)	513
Bme1390I	CCNGG	3 cut(s)	307, 612, 687
BmgT120I	GGNCC	1 cut(s)	613
BmiI	GGNNCC	1 cut(s)	370
BmrFI	CCNGG	3 cut(s)	307, 612, 687
BmrI	ACTGGG	2 cut(s)	339, 529
BmsI	GCATC	1 cut(s)	490
BmuI	ACTGGG	2 cut(s)	339, 529
BoxI	GACNNNNGTC	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	686
Bpu10I	CCTNAGC	1 cut(s)	477
Bpu14I	TTCGAA	1 cut(s)	383
BpuEI	CTTGAG	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	612
Bsa29I	ATCGAT	1 cut(s)	696
BsaJI	CCNNGG	2 cut(s)	288, 634
BsaWI	WCCGGW	1 cut(s)	70
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 364
Bse1I	ACTGG	4 cut(s)	144, 334, 519, 524
BseBI	CCWGG	2 cut(s)	307, 687
BseCI	ATCGAT	1 cut(s)	696
BseDI	CCNNGG	2 cut(s)	288, 634
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	2 cut(s)	329, 364
BseMII	CTCAG	1 cut(s)	468
BseNI	ACTGG	4 cut(s)	144, 334, 519, 524
BseSI	GKGCMC	1 cut(s)	255
BshFI	GGCC	3 cut(s)	5, 615, 629
BshVI	ATCGAT	1 cut(s)	696
BsiSI	CCGG	2 cut(s)	71, 611
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	2 cut(s)	329, 364
BsmFI	GGGAC	1 cut(s)	346
BsnI	GGCC	3 cut(s)	5, 615, 629
Bsp119I	TTCGAA	1 cut(s)	383
Bsp1286I	GDGCHC	2 cut(s)	110, 255
Bsp143I	GATC	2 cut(s)	179, 195
Bsp19I	CCATGG	1 cut(s)	288
BspACI	CCGC	4 cut(s)	6, 111, 394, 549
BspANI	GGCC	3 cut(s)	5, 615, 629
BspCNI	CTCAG	1 cut(s)	469
BspDI	ATCGAT	1 cut(s)	696
BspLI	GGNNCC	1 cut(s)	370
BspT104I	TTCGAA	1 cut(s)	383
BsrBI	CCGCTC	1 cut(s)	8
BsrI	ACTGG	4 cut(s)	144, 334, 519, 524
BssECI	CCNNGG	2 cut(s)	288, 634
BssMI	GATC	2 cut(s)	179, 195
BssT1I	CCWWGG	2 cut(s)	288, 634
Bst2UI	CCWGG	2 cut(s)	307, 687
Bst4CI	ACNGT	1 cut(s)	436
Bst6I	CTCTTC	2 cut(s)	193, 642
BstBI	TTCGAA	1 cut(s)	383
BstDEI	CTNAG	1 cut(s)	477
BstDSI	CCRYGG	1 cut(s)	288
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstF5I	GGATG	1 cut(s)	481
BstKTI	GATC	2 cut(s)	182, 198
BstMBI	GATC	2 cut(s)	179, 195
BstMWI	GCNNNNNNNGC	1 cut(s)	555
BstNI	CCWGG	2 cut(s)	307, 687
BstPAI	GACNNNNGTC	1 cut(s)	218
BstSCI	CCNGG	3 cut(s)	305, 610, 685
BstSLI	GKGCMC	1 cut(s)	255
BstV2I	GAAGAC	1 cut(s)	110
BstXI	CCANNNNNNTGG	1 cut(s)	349
Bsu15I	ATCGAT	1 cut(s)	696
BsuI	GTATCC	1 cut(s)	365
BsuRI	GGCC	3 cut(s)	5, 615, 629
BsuTUI	ATCGAT	1 cut(s)	696
BtgI	CCRYGG	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	481
BtsI	GCAGTG	1 cut(s)	559
BtsIMutI	CAGTG	2 cut(s)	151, 559
Cfr13I	GGNCC	1 cut(s)	613
ClaI	ATCGAT	1 cut(s)	696
Csp6I	GTAC	2 cut(s)	319, 512
CviAII	CATG	2 cut(s)	289, 349
CviQI	GTAC	2 cut(s)	319, 512
DdeI	CTNAG	1 cut(s)	477
DpnI	GATC	2 cut(s)	181, 197
DpnII	GATC	2 cut(s)	179, 195
EaeI	YGGCCR	2 cut(s)	3, 627
Eam1104I	CTCTTC	2 cut(s)	193, 642
EarI	CTCTTC	2 cut(s)	193, 642
Eco130I	CCWWGG	2 cut(s)	288, 634
Eco24I	GRGCYC	1 cut(s)	110
Eco57I	CTGAAG	3 cut(s)	104, 187, 357
EcoNI	CCTNNNNNAGG	1 cut(s)	362
EcoRII	CCWGG	2 cut(s)	305, 685
EcoT14I	CCWWGG	2 cut(s)	288, 634
EcoT38I	GRGCYC	1 cut(s)	110
ErhI	CCWWGG	2 cut(s)	288, 634
FaeI	CATG	2 cut(s)	292, 352
FaiI	YATR	6 cut(s)	130, 275, 290, 350, 461, 597
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	2 cut(s)	288, 348
FauI	CCCGC	1 cut(s)	118
Fnu4HI	GCNGC	2 cut(s)	6, 550
FokI	GGATG	1 cut(s)	468
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	2 cut(s)	6, 550
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	2 cut(s)	6, 550
GsuI	CTGGAG	1 cut(s)	686
HaeIII	GGCC	3 cut(s)	5, 615, 629
HapII	CCGG	2 cut(s)	71, 611
Hin1II	CATG	2 cut(s)	292, 352
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	5 cut(s)	74, 153, 605, 668, 690
HpaII	CCGG	2 cut(s)	71, 611
HphI	GGTGA	1 cut(s)	600
Hpy188I	TCNGA	6 cut(s)	93, 123, 137, 152, 179, 682
Hpy188III	TCNNGA	2 cut(s)	211, 476
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4V	TGCA	1 cut(s)	488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	555
HpyF3I	CTNAG	1 cut(s)	477
Hsp92II	CATG	2 cut(s)	292, 352
Kzo9I	GATC	2 cut(s)	179, 195
LmnI	GCTCC	1 cut(s)	180
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	1 cut(s)	264
MaeIII	GTNAC	2 cut(s)	406, 441
MalI	GATC	2 cut(s)	181, 197
MbiI	CCGCTC	1 cut(s)	8
MboI	GATC	2 cut(s)	179, 195
MboII	GAAGA	5 cut(s)	110, 180, 440, 631, 659
MhlI	GDGCHC	2 cut(s)	110, 255
MlsI	TGGCCA	1 cut(s)	629
MluCI	AATT	4 cut(s)	296, 386, 561, 675
MluNI	TGGCCA	1 cut(s)	629
MlyI	GAGTC	3 cut(s)	83, 162, 677
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	5 cut(s)	56, 99, 218, 358, 368
Mox20I	TGGCCA	1 cut(s)	629
MroXI	GAANNNNTTC	1 cut(s)	342
MscI	TGGCCA	1 cut(s)	629
MseI	TTAA	2 cut(s)	438, 674
MslI	CAYNNNNRTG	1 cut(s)	347
Msp20I	TGGCCA	1 cut(s)	629
MspI	CCGG	2 cut(s)	71, 611
MspR9I	CCNGG	3 cut(s)	307, 612, 687
MvaI	CCWGG	2 cut(s)	307, 687
MwoI	GCNNNNNNNGC	1 cut(s)	555
NciI	CCSGG	1 cut(s)	612
NcoI	CCATGG	1 cut(s)	288
NdeII	GATC	2 cut(s)	179, 195
NlaIII	CATG	2 cut(s)	292, 352
NlaIV	GGNNCC	1 cut(s)	370
NspV	TTCGAA	1 cut(s)	383
PdmI	GAANNNNTTC	1 cut(s)	342
PfeI	GAWTC	2 cut(s)	605, 690
PflMI	CCANNNNNTGG	1 cut(s)	329
PkrI	GCNGC	2 cut(s)	7, 551
PleI	GAGTC	3 cut(s)	82, 161, 676
PpsI	GAGTC	3 cut(s)	82, 161, 676
PshAI	GACNNNNGTC	1 cut(s)	218
Psp6I	CCWGG	2 cut(s)	305, 685
PspGI	CCWGG	2 cut(s)	305, 685
PspN4I	GGNNCC	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	613
RsaI	GTAC	2 cut(s)	320, 513
RsaNI	GTAC	2 cut(s)	319, 512
RseI	CAYNNNNRTG	1 cut(s)	347
SaqAI	TTAA	2 cut(s)	438, 674
SatI	GCNGC	2 cut(s)	6, 550
Sau3AI	GATC	2 cut(s)	179, 195
Sau96I	GGNCC	1 cut(s)	613
ScaI	AGTACT	1 cut(s)	513
SchI	GAGTC	3 cut(s)	83, 162, 677
ScrFI	CCNGG	3 cut(s)	307, 612, 687
SduI	GDGCHC	2 cut(s)	110, 255
SetI	ASST	9 cut(s)	27, 91, 177, 315, 423, 457, 505, 666, 688
SfaNI	GCATC	1 cut(s)	490
SfuI	TTCGAA	1 cut(s)	383
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	4 cut(s)	296, 386, 561, 675
SsiI	CCGC	4 cut(s)	6, 111, 394, 549
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	3 cut(s)	305, 610, 685
StyI	CCWWGG	2 cut(s)	288, 634
TaaI	ACNGT	1 cut(s)	436
TaqI	TCGA	2 cut(s)	383, 696
TasI	AATT	4 cut(s)	296, 386, 561, 675
TatI	WGTACW	1 cut(s)	511
TauI	GCSGC	2 cut(s)	8, 552
TfiI	GAWTC	2 cut(s)	605, 690
Tru1I	TTAA	2 cut(s)	438, 674
Tru9I	TTAA	2 cut(s)	438, 674
TscAI	CASTG	2 cut(s)	151, 559
TspDTI	ATGAA	3 cut(s)	612, 660, 682
TspGWI	ACGGA	1 cut(s)	417
TspRI	CASTG	2 cut(s)	151, 559
Van91I	CCANNNNNTGG	1 cut(s)	329
XagI	CCTNNNNNAGG	1 cut(s)	362
XapI	RAATTY	1 cut(s)	386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XmnI	GAANNNNTTC	1 cut(s)	342
XspI	CTAG	1 cut(s)	264
ZrmI	AGTACT	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.