Clp protease-related protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G12060 |
| fragaria_vesca | FvH4_5g00880 |
| malus_domestica | MD06G1067100.v1.1 MD17G1137600.v1.1 |
| prunus_persica | Prupe.5G082000_v2.0.a1 Prupe.5G082000_v2.0.a1 |
| pyrus_communis | pycom04g06840 pycom06g06470 |
| rosa_chinensis | RchiOBHm_Chr7g0200491 RchiOBHm_Chr7g0200901 |
| rosa_laevigata | RLG00000003721 |
| rosa_multiflora | Rmu_sc0000617.1_g000023 Rmu_sc0000708.1_g000019 |
| rosa_roxburghii | Rroxscaffold_3G00255920 |
| rosa_rugosa | Rorug07G0060500 Rorug07G0060500 |
| rosa_samantha | Rh7AG186300 Rh7BG189100 Rh7CG196400 Rh7CG196900 Rh7DG190300 Rh7DG192200 |
| rosa_wichuraiana | Rw7G016320 Rw7G016400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 329 |
| AccBSI | CCGCTC | 1 cut(s) | 8 |
| AccI | GTMKAC | 1 cut(s) | 118 |
| AciI | CCGC | 1 cut(s) | 6 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AfaI | GTAC | 2 cut(s) | 320, 410 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 329 |
| AgsI | TTSAA | 4 cut(s) | 49, 106, 364, 589 |
| AjnI | CCWGG | 1 cut(s) | 305 |
| AluBI | AGCT | 7 cut(s) | 25, 32, 175, 313, 401, 449, 610 |
| AluI | AGCT | 7 cut(s) | 25, 32, 175, 313, 401, 449, 610 |
| Alw21I | GWGCWC | 1 cut(s) | 462 |
| Alw26I | GTCTC | 2 cut(s) | 43, 152 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ApeKI | GCWGC | 1 cut(s) | 339 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 85, 117 |
| AsuC2I | CCSGG | 1 cut(s) | 558 |
| AsuHPI | GGTGA | 1 cut(s) | 546 |
| BaeGI | GKGCMC | 1 cut(s) | 255 |
| BanII | GRGCYC | 1 cut(s) | 163 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 302, 334 |
| Bbv12I | GWGCWC | 1 cut(s) | 462 |
| BbvCI | CCTCAGC | 1 cut(s) | 203 |
| BbvI | GCAGC | 1 cut(s) | 326 |
| BccI | CCATC | 2 cut(s) | 389, 623 |
| BciT130I | CCWGG | 1 cut(s) | 307 |
| BcnI | CCSGG | 1 cut(s) | 558 |
| BcoDI | GTCTC | 2 cut(s) | 43, 152 |
| BfmI | CTRYAG | 1 cut(s) | 119 |
| BisI | GCNGC | 2 cut(s) | 6, 340 |
| BlsI | GCNGC | 2 cut(s) | 7, 341 |
| Bme1390I | CCNGG | 2 cut(s) | 307, 558 |
| BmiI | GGNNCC | 1 cut(s) | 139 |
| BmrFI | CCNGG | 2 cut(s) | 307, 558 |
| BmrI | ACTGGG | 2 cut(s) | 339, 475 |
| BmsI | GCATC | 1 cut(s) | 436 |
| BmuI | ACTGGG | 2 cut(s) | 339, 475 |
| BpmI | CTGGAG | 1 cut(s) | 632 |
| Bpu10I | CCTNAGC | 2 cut(s) | 203, 423 |
| BpuEI | CTTGAG | 1 cut(s) | 299 |
| BpuMI | CCSGG | 1 cut(s) | 558 |
| BsaJI | CCNNGG | 2 cut(s) | 288, 580 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 216, 246 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 329 |
| Bse1I | ACTGG | 3 cut(s) | 240, 334, 470 |
| BseBI | CCWGG | 1 cut(s) | 307 |
| BseDI | CCNNGG | 2 cut(s) | 288, 580 |
| BseGI | GGATG | 1 cut(s) | 427 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 329 |
| BseMII | CTCAG | 2 cut(s) | 217, 414 |
| BseNI | ACTGG | 3 cut(s) | 240, 334, 470 |
| BseSI | GKGCMC | 1 cut(s) | 255 |
| BseXI | GCAGC | 1 cut(s) | 326 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BsiHKAI | GWGCWC | 1 cut(s) | 462 |
| BsiSI | CCGG | 1 cut(s) | 557 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 329 |
| BsmAI | GTCTC | 2 cut(s) | 43, 152 |
| BsmBI | CGTCTC | 1 cut(s) | 43 |
| BsnI | GGCC | 1 cut(s) | 5 |
| Bsp1286I | GDGCHC | 3 cut(s) | 163, 255, 462 |
| Bsp19I | CCATGG | 1 cut(s) | 288 |
| BspACI | CCGC | 1 cut(s) | 6 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspCNI | CTCAG | 2 cut(s) | 216, 415 |
| BspLI | GGNNCC | 1 cut(s) | 139 |
| BsrBI | CCGCTC | 1 cut(s) | 8 |
| BsrI | ACTGG | 3 cut(s) | 240, 334, 470 |
| BssECI | CCNNGG | 2 cut(s) | 288, 580 |
| BssT1I | CCWWGG | 2 cut(s) | 288, 580 |
| Bst2UI | CCWGG | 1 cut(s) | 307 |
| Bst4CI | ACNGT | 2 cut(s) | 146, 360 |
| Bst6I | CTCTTC | 2 cut(s) | 193, 588 |
| BstDEI | CTNAG | 2 cut(s) | 203, 423 |
| BstDSI | CCRYGG | 1 cut(s) | 288 |
| BstF5I | GGATG | 1 cut(s) | 427 |
| BstMAI | GTCTC | 2 cut(s) | 43, 152 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 345 |
| BstNI | CCWGG | 1 cut(s) | 307 |
| BstSCI | CCNGG | 2 cut(s) | 305, 556 |
| BstSFI | CTRYAG | 1 cut(s) | 119 |
| BstSLI | GKGCMC | 1 cut(s) | 255 |
| BstV1I | GCAGC | 1 cut(s) | 326 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| BtgI | CCRYGG | 1 cut(s) | 288 |
| BtsCI | GGATG | 1 cut(s) | 427 |
| BtsIMutI | CAGTG | 3 cut(s) | 247, 327, 356 |
| Csp6I | GTAC | 2 cut(s) | 319, 409 |
| CviAII | CATG | 1 cut(s) | 289 |
| CviQI | GTAC | 2 cut(s) | 319, 409 |
| DdeI | CTNAG | 2 cut(s) | 203, 423 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 2 cut(s) | 193, 588 |
| EarI | CTCTTC | 2 cut(s) | 193, 588 |
| Eco130I | CCWWGG | 2 cut(s) | 288, 580 |
| Eco24I | GRGCYC | 1 cut(s) | 163 |
| EcoRII | CCWGG | 1 cut(s) | 305 |
| EcoT14I | CCWWGG | 2 cut(s) | 288, 580 |
| EcoT38I | GRGCYC | 1 cut(s) | 163 |
| ErhI | CCWWGG | 2 cut(s) | 288, 580 |
| Esp3I | CGTCTC | 1 cut(s) | 43 |
| FaeI | CATG | 1 cut(s) | 292 |
| FaiI | YATR | 5 cut(s) | 130, 275, 290, 407, 543 |
| FatI | CATG | 1 cut(s) | 288 |
| FblI | GTMKAC | 1 cut(s) | 118 |
| Fnu4HI | GCNGC | 2 cut(s) | 6, 340 |
| FokI | GGATG | 1 cut(s) | 414 |
| FriOI | GRGCYC | 1 cut(s) | 163 |
| Fsp4HI | GCNGC | 2 cut(s) | 6, 340 |
| GluI | GCNGC | 2 cut(s) | 6, 340 |
| GsuI | CTGGAG | 1 cut(s) | 632 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| HapII | CCGG | 1 cut(s) | 557 |
| Hin1II | CATG | 1 cut(s) | 292 |
| HindIII | AAGCTT | 1 cut(s) | 23 |
| HinfI | GANTC | 5 cut(s) | 74, 124, 153, 551, 614 |
| HpaII | CCGG | 1 cut(s) | 557 |
| HphI | GGTGA | 1 cut(s) | 546 |
| Hpy166II | GTNNAC | 1 cut(s) | 119 |
| Hpy188I | TCNGA | 6 cut(s) | 93, 137, 152, 158, 179, 628 |
| Hpy188III | TCNNGA | 2 cut(s) | 211, 422 |
| Hpy8I | GTNNAC | 1 cut(s) | 119 |
| HpyAV | CCTTC | 2 cut(s) | 55, 329 |
| HpyCH4III | ACNGT | 2 cut(s) | 146, 360 |
| HpyCH4V | TGCA | 1 cut(s) | 434 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 345 |
| HpyF3I | CTNAG | 2 cut(s) | 203, 423 |
| Hsp92II | CATG | 1 cut(s) | 292 |
| LmnI | GCTCC | 1 cut(s) | 180 |
| Lsp1109I | GCAGC | 1 cut(s) | 326 |
| LweI | GCATC | 1 cut(s) | 436 |
| MaeIII | GTNAC | 2 cut(s) | 387, 560 |
| MbiI | CCGCTC | 1 cut(s) | 8 |
| MboII | GAAGA | 3 cut(s) | 180, 386, 605 |
| MhlI | GDGCHC | 3 cut(s) | 163, 255, 462 |
| MluCI | AATT | 3 cut(s) | 296, 507, 621 |
| MlyI | GAGTC | 2 cut(s) | 162, 623 |
| MmeI | TCCRAC | 1 cut(s) | 202 |
| MnlI | CCTC | 5 cut(s) | 99, 212, 218, 238, 586 |
| MseI | TTAA | 1 cut(s) | 620 |
| MspI | CCGG | 1 cut(s) | 557 |
| MspR9I | CCNGG | 2 cut(s) | 307, 558 |
| MvaI | CCWGG | 1 cut(s) | 307 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 345 |
| NciI | CCSGG | 1 cut(s) | 558 |
| NcoI | CCATGG | 1 cut(s) | 288 |
| NlaIII | CATG | 1 cut(s) | 292 |
| NlaIV | GGNNCC | 1 cut(s) | 139 |
| NmuCI | GTSAC | 1 cut(s) | 560 |
| PfeI | GAWTC | 3 cut(s) | 74, 124, 551 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 329 |
| PkrI | GCNGC | 2 cut(s) | 7, 341 |
| PleI | GAGTC | 2 cut(s) | 161, 622 |
| PpsI | GAGTC | 2 cut(s) | 161, 622 |
| Psp6I | CCWGG | 1 cut(s) | 305 |
| PspGI | CCWGG | 1 cut(s) | 305 |
| PspN4I | GGNNCC | 1 cut(s) | 139 |
| RsaI | GTAC | 2 cut(s) | 320, 410 |
| RsaNI | GTAC | 2 cut(s) | 319, 409 |
| SaqAI | TTAA | 1 cut(s) | 620 |
| SatI | GCNGC | 2 cut(s) | 6, 340 |
| SchI | GAGTC | 2 cut(s) | 162, 623 |
| ScrFI | CCNGG | 2 cut(s) | 307, 558 |
| SduI | GDGCHC | 3 cut(s) | 163, 255, 462 |
| SfaNI | GCATC | 1 cut(s) | 436 |
| SfcI | CTRYAG | 1 cut(s) | 119 |
| SmlI | CTYRAG | 1 cut(s) | 314 |
| SmoI | CTYRAG | 1 cut(s) | 314 |
| Sse9I | AATT | 3 cut(s) | 296, 507, 621 |
| SsiI | CCGC | 1 cut(s) | 6 |
| StyD4I | CCNGG | 2 cut(s) | 305, 556 |
| StyI | CCWWGG | 2 cut(s) | 288, 580 |
| TaaI | ACNGT | 2 cut(s) | 146, 360 |
| TaqI | TCGA | 1 cut(s) | 462 |
| TasI | AATT | 3 cut(s) | 296, 507, 621 |
| TatI | WGTACW | 1 cut(s) | 408 |
| TauI | GCSGC | 1 cut(s) | 8 |
| TfiI | GAWTC | 3 cut(s) | 74, 124, 551 |
| Tru1I | TTAA | 1 cut(s) | 620 |
| Tru9I | TTAA | 1 cut(s) | 620 |
| TscAI | CASTG | 3 cut(s) | 247, 334, 363 |
| TseFI | GTSAC | 1 cut(s) | 560 |
| TseI | GCWGC | 1 cut(s) | 339 |
| Tsp45I | GTSAC | 1 cut(s) | 560 |
| TspDTI | ATGAA | 2 cut(s) | 558, 606 |
| TspRI | CASTG | 3 cut(s) | 247, 334, 363 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 329 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 295 |
| XmiI | GTMKAC | 1 cut(s) | 118 |