Rh7CG196400

Clp protease-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0007687
Physical Location & Seq
Reverse (-)
17264949 .. 17325545
60597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG196400.1

Sequence Viewer

Length: 417 bp
ATGGGGGAATTGGAAGCCAGGAAGCTCAAGTACCCAACCACTGGGACTGAAGCAATTCTCATGGGTATCCTCATCGAGGGAACCACTTTGGCTTCAAAATTTTTGCGGGCAAATGGACTTACACTGTTCAAGGTGCGTGAAGAAACCATCAAGTTACTTGGGAAAGCTGATATGTACTTTTTCAGTCCTGAGCATCCTGCATTGACTGACGAAGCTCAAAGAGTGCTCGACTGGGCTGTTGATAAGAAAATAAAATCTGGTGGTAGTGGTGAAATTACAACATCTCATCTGCTTCTTGGCATTTGGTATGAAGTGGATTCACCGGGTCACAAGATAATGGCCTCCCTTGGCTTCAATGAAGAGAAAGTGAAAGAGCTGGAGTCTTTAATTTCTGAACCTGGATTCATTGATGGATGA

Protein Analysis

138

Amino Acids

15.23

Weight (kDa)

5.24

Isoelectric Point (pI)

27.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clp_N PF02861 5 - 113 1.7e-11 Clp repeat (R) N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 41
AciI CCGC 1 cut(s) 106
AcsI RAATTY 1 cut(s) 98
AcuI CTGAAG 1 cut(s) 69
AfaI GTAC 2 cut(s) 32, 176
AfiI CCNNNNNNNGG 2 cut(s) 41, 76
AgsI TTSAA 3 cut(s) 96, 130, 355
AjnI CCWGG 2 cut(s) 17, 397
AluBI AGCT 4 cut(s) 25, 167, 215, 376
AluI AGCT 4 cut(s) 25, 167, 215, 376
Alw21I GWGCWC 1 cut(s) 228
AoxI GGCC 1 cut(s) 339
ApoI RAATTY 1 cut(s) 98
Asp700I GAANNNNTTC 1 cut(s) 54
AsuC2I CCSGG 1 cut(s) 324
AsuHPI GGTGA 2 cut(s) 281, 312
BarI GAAGNNNNNNTAC 2 cut(s) 14, 46
Bbv12I GWGCWC 1 cut(s) 228
BccI CCATC 2 cut(s) 155, 404
BciT130I CCWGG 2 cut(s) 19, 399
BciVI GTATCC 1 cut(s) 77
BcnI CCSGG 1 cut(s) 324
BfuI GTATCC 1 cut(s) 77
Bme1390I CCNGG 3 cut(s) 19, 324, 399
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 3 cut(s) 19, 324, 399
BmrI ACTGGG 2 cut(s) 51, 241
BmsI GCATC 1 cut(s) 202
BmuI ACTGGG 2 cut(s) 51, 241
BpmI CTGGAG 1 cut(s) 398
Bpu10I CCTNAGC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 11
BpuMI CCSGG 1 cut(s) 324
BsaJI CCNNGG 1 cut(s) 346
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 76
Bse1I ACTGG 2 cut(s) 46, 236
BseBI CCWGG 2 cut(s) 19, 399
BseDI CCNNGG 1 cut(s) 346
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 2 cut(s) 41, 76
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 2 cut(s) 46, 236
BshFI GGCC 1 cut(s) 341
BsiHKAI GWGCWC 1 cut(s) 228
BsiSI CCGG 1 cut(s) 323
BslFI GGGAC 1 cut(s) 58
BslI CCNNNNNNNGG 2 cut(s) 41, 76
BsmFI GGGAC 1 cut(s) 58
BsnI GGCC 1 cut(s) 341
Bsp1286I GDGCHC 1 cut(s) 228
BspACI CCGC 1 cut(s) 106
BspANI GGCC 1 cut(s) 341
BspCNI CTCAG 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 82
BsrI ACTGG 2 cut(s) 46, 236
BssECI CCNNGG 1 cut(s) 346
BssT1I CCWWGG 1 cut(s) 346
Bst2UI CCWGG 2 cut(s) 19, 399
Bst4CI ACNGT 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 189
BstENI CCTNNNNNAGG 1 cut(s) 74
BstF5I GGATG 1 cut(s) 193
BstNI CCWGG 2 cut(s) 19, 399
BstSCI CCNGG 3 cut(s) 17, 322, 397
BsuI GTATCC 1 cut(s) 77
BsuRI GGCC 1 cut(s) 341
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 2 cut(s) 39, 122
Cac8I GCNNGC 1 cut(s) 108
Csp6I GTAC 2 cut(s) 31, 175
CviAII CATG 1 cut(s) 61
CviJI RGCY 9 cut(s) 17, 25, 92, 167, 215, 236, 341, 351, 376
CviKI_1 RGCY 9 cut(s) 17, 25, 92, 167, 215, 236, 341, 351, 376
CviQI GTAC 2 cut(s) 31, 175
DdeI CTNAG 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 69
EcoNI CCTNNNNNAGG 1 cut(s) 74
EcoRII CCWGG 2 cut(s) 17, 397
EcoT14I CCWWGG 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 346
FaeI CATG 1 cut(s) 64
FaiI YATR 3 cut(s) 62, 173, 309
FaqI GGGAC 1 cut(s) 58
FatI CATG 1 cut(s) 60
FauI CCCGC 1 cut(s) 99
FokI GGATG 1 cut(s) 180
GsuI CTGGAG 1 cut(s) 398
HaeIII GGCC 1 cut(s) 341
HapII CCGG 1 cut(s) 323
Hin1II CATG 1 cut(s) 64
HinfI GANTC 3 cut(s) 317, 380, 402
HpaII CCGG 1 cut(s) 323
HphI GGTGA 2 cut(s) 281, 312
Hpy188I TCNGA 1 cut(s) 394
Hpy188III TCNNGA 1 cut(s) 188
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4V TGCA 1 cut(s) 200
HpyF3I CTNAG 1 cut(s) 189
Hsp92II CATG 1 cut(s) 64
LweI GCATC 1 cut(s) 202
MaeIII GTNAC 2 cut(s) 153, 326
MboII GAAGA 2 cut(s) 152, 371
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 5 cut(s) 8, 54, 98, 273, 387
MlyI GAGTC 1 cut(s) 389
MnlI CCTC 3 cut(s) 70, 80, 352
MroXI GAANNNNTTC 1 cut(s) 54
MseI TTAA 1 cut(s) 386
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 3 cut(s) 19, 324, 399
MvaI CCWGG 2 cut(s) 19, 399
NciI CCSGG 1 cut(s) 324
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 326
PdmI GAANNNNTTC 1 cut(s) 54
PfeI GAWTC 2 cut(s) 317, 402
PflMI CCANNNNNTGG 1 cut(s) 41
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
Psp6I CCWGG 2 cut(s) 17, 397
PspGI CCWGG 2 cut(s) 17, 397
PspN4I GGNNCC 1 cut(s) 82
RsaI GTAC 2 cut(s) 32, 176
RsaNI GTAC 2 cut(s) 31, 175
SaqAI TTAA 1 cut(s) 386
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 3 cut(s) 19, 324, 399
SduI GDGCHC 1 cut(s) 228
SetI ASST 6 cut(s) 27, 135, 169, 217, 378, 400
SfaNI GCATC 1 cut(s) 202
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 5 cut(s) 8, 54, 98, 273, 387
SsiI CCGC 1 cut(s) 106
StyD4I CCNGG 3 cut(s) 17, 322, 397
StyI CCWWGG 1 cut(s) 346
TaaI ACNGT 1 cut(s) 126
TaqI TCGA 2 cut(s) 75, 228
TasI AATT 5 cut(s) 8, 54, 98, 273, 387
TatI WGTACW 1 cut(s) 174
TfiI GAWTC 2 cut(s) 317, 402
Tru1I TTAA 1 cut(s) 386
Tru9I TTAA 1 cut(s) 386
TscAI CASTG 2 cut(s) 46, 129
TseFI GTSAC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 3 cut(s) 324, 372, 394
TspRI CASTG 2 cut(s) 46, 129
Van91I CCANNNNNTGG 1 cut(s) 41
XagI CCTNNNNNAGG 1 cut(s) 74
XapI RAATTY 1 cut(s) 98
XmnI GAANNNNTTC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.