Rh7DG192200

Clp protease-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0007687
Physical Location & Seq
Reverse (-)
17940351 .. 17942541
2191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG192200.1

Sequence Viewer

Length: 558 bp
ATGGCCGCTCACTCCCTCTCCAAGCTTCCAGCTTTCGTCTCTGCCTTGAATCCCAATCAAACAACCAAACCCGAATCGTGTTCTCTACCTCTGACCACGACTTTGAAGCCCACAAGTCTACAGAATCTATGGCTCGGAACCAACAGTACGTCTCGGAGTCAGAGCCCAACTGCCAAAGCTCCGACCTTTCTCTTCCACAATCTGCCTCAGCCTCCCGACCGCCATTGGGCTGCAGGAACCACTTTGGCTTCAAAATTTTTGCGGGCAAATGGACTTACAGTGTTCAAGGTGCGTGAAGAAACCATCAAGTTACTTGGGAAAGCTGATATGTACTTTTTCAGTCCTGAGCATCCTGCATTGACTGACGAAGCTCAAAGAGTGCTCGACTGGGCCGTTGATAAGAAAATAAAATCTGGTGGTAGTGGCGAAATTACAACATCTCATCTGCTTCTTGGCATTTGGTATGAAGTGGATTCACCGGGTCACAAGATAATGGCCTCCCTTGGCTTCAATGAAGAGAAAGTGAAAGAGCTGGAGTCTTTAATTTCTGATGGATGA

Protein Analysis

185

Amino Acids

20.24

Weight (kDa)

7.89

Isoelectric Point (pI)

39.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clp_N PF02861 80 - 165 5.3e-07 Clp repeat (R) N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 8
AccI GTMKAC 1 cut(s) 118
AciI CCGC 3 cut(s) 6, 220, 262
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 254
AfaI GTAC 2 cut(s) 148, 332
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 5 cut(s) 49, 106, 252, 286, 511
AluBI AGCT 6 cut(s) 25, 32, 179, 323, 371, 532
AluI AGCT 6 cut(s) 25, 32, 179, 323, 371, 532
Alw21I GWGCWC 1 cut(s) 384
Alw26I GTCTC 2 cut(s) 43, 156
AoxI GGCC 3 cut(s) 3, 390, 495
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 254
ArsI GACNNNNNNTTYG 2 cut(s) 85, 117
AspS9I GGNCC 1 cut(s) 390
AsuC2I CCSGG 1 cut(s) 480
AsuHPI GGTGA 1 cut(s) 468
BanII GRGCYC 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 384
BbvCI CCTCAGC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 217
BccI CCATC 2 cut(s) 311, 545
BceAI ACGGC 1 cut(s) 377
BcnI CCSGG 1 cut(s) 480
BcoDI GTCTC 2 cut(s) 43, 156
BfmI CTRYAG 2 cut(s) 119, 231
BisI GCNGC 2 cut(s) 6, 231
BlsI GCNGC 2 cut(s) 7, 232
Bme1390I CCNGG 1 cut(s) 480
BmgT120I GGNCC 1 cut(s) 390
BmiI GGNNCC 2 cut(s) 139, 238
BmrFI CCNGG 1 cut(s) 480
BmrI ACTGGG 1 cut(s) 397
BmsI GCATC 1 cut(s) 358
BmuI ACTGGG 1 cut(s) 397
BpmI CTGGAG 1 cut(s) 554
Bpu10I CCTNAGC 2 cut(s) 207, 345
BpuMI CCSGG 1 cut(s) 480
BsaJI CCNNGG 1 cut(s) 502
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 392
BseDI CCNNGG 1 cut(s) 502
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMII CTCAG 2 cut(s) 221, 336
BseNI ACTGG 1 cut(s) 392
BseXI GCAGC 1 cut(s) 217
Bsh1285I CGRYCG 1 cut(s) 220
BshFI GGCC 3 cut(s) 5, 392, 497
BsiEI CGRYCG 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 384
BsiSI CCGG 1 cut(s) 479
BslI CCNNNNNNNGG 1 cut(s) 226
BsmAI GTCTC 2 cut(s) 43, 156
BsmBI CGTCTC 2 cut(s) 43, 156
BsnI GGCC 3 cut(s) 5, 392, 497
Bsp1286I GDGCHC 2 cut(s) 167, 384
BspACI CCGC 3 cut(s) 6, 220, 262
BspANI GGCC 3 cut(s) 5, 392, 497
BspCNI CTCAG 2 cut(s) 220, 337
BspLI GGNNCC 2 cut(s) 139, 238
BspMAI CTGCAG 1 cut(s) 235
BsrBI CCGCTC 1 cut(s) 8
BsrI ACTGG 1 cut(s) 392
BssECI CCNNGG 1 cut(s) 502
BssT1I CCWWGG 1 cut(s) 502
Bst4CI ACNGT 2 cut(s) 146, 280
Bst6I CTCTTC 2 cut(s) 197, 510
BstC8I GCNNGC 1 cut(s) 264
BstDEI CTNAG 2 cut(s) 207, 345
BstF5I GGATG 1 cut(s) 349
BstMAI GTCTC 2 cut(s) 43, 156
BstMCI CGRYCG 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 478
BstSFI CTRYAG 2 cut(s) 119, 231
BstV1I GCAGC 1 cut(s) 217
BsuRI GGCC 3 cut(s) 5, 392, 497
BtsCI GGATG 1 cut(s) 349
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 390
Csp6I GTAC 2 cut(s) 147, 331
CviQI GTAC 2 cut(s) 147, 331
DdeI CTNAG 2 cut(s) 207, 345
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 197, 510
EarI CTCTTC 2 cut(s) 197, 510
Eco130I CCWWGG 1 cut(s) 502
Eco24I GRGCYC 1 cut(s) 167
EcoT14I CCWWGG 1 cut(s) 502
EcoT38I GRGCYC 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 502
Esp3I CGTCTC 2 cut(s) 43, 156
FaiI YATR 3 cut(s) 130, 329, 465
FauI CCCGC 1 cut(s) 255
FblI GTMKAC 1 cut(s) 118
Fnu4HI GCNGC 2 cut(s) 6, 231
FokI GGATG 1 cut(s) 336
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 2 cut(s) 6, 231
GluI GCNGC 2 cut(s) 6, 231
GsuI CTGGAG 1 cut(s) 554
HaeIII GGCC 3 cut(s) 5, 392, 497
HapII CCGG 1 cut(s) 479
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 6 cut(s) 49, 74, 124, 157, 473, 536
HpaII CCGG 1 cut(s) 479
HphI GGTGA 1 cut(s) 468
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 6 cut(s) 93, 137, 156, 162, 183, 550
Hpy188III TCNNGA 2 cut(s) 215, 344
Hpy8I GTNNAC 1 cut(s) 119
HpyCH4III ACNGT 2 cut(s) 146, 280
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 2 cut(s) 233, 356
HpyF3I CTNAG 2 cut(s) 207, 345
HpySE526I ACGT 1 cut(s) 149
LmnI GCTCC 1 cut(s) 184
LpnPI CCDG 8 cut(s) 42, 219, 357, 366, 373, 399, 492, 518
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 1 cut(s) 358
MaeII ACGT 1 cut(s) 149
MaeIII GTNAC 2 cut(s) 309, 482
MbiI CCGCTC 1 cut(s) 8
MboII GAAGA 3 cut(s) 184, 308, 527
MhlI GDGCHC 2 cut(s) 167, 384
MluCI AATT 3 cut(s) 254, 429, 543
MlyI GAGTC 2 cut(s) 166, 545
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 5 cut(s) 26, 99, 216, 222, 508
MseI TTAA 1 cut(s) 542
MspI CCGG 1 cut(s) 479
MspR9I CCNGG 1 cut(s) 480
NciI CCSGG 1 cut(s) 480
NlaIV GGNNCC 2 cut(s) 139, 238
NmuCI GTSAC 1 cut(s) 482
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PfeI GAWTC 4 cut(s) 49, 74, 124, 473
PkrI GCNGC 2 cut(s) 7, 232
PleI GAGTC 2 cut(s) 165, 544
PpsI GAGTC 2 cut(s) 165, 544
PspN4I GGNNCC 2 cut(s) 139, 238
PspPI GGNCC 1 cut(s) 390
PsrI GAACNNNNNNTAC 2 cut(s) 130, 162
PstI CTGCAG 1 cut(s) 235
RsaI GTAC 2 cut(s) 148, 332
RsaNI GTAC 2 cut(s) 147, 331
SaqAI TTAA 1 cut(s) 542
SatI GCNGC 2 cut(s) 6, 231
Sau96I GGNCC 1 cut(s) 390
SchI GAGTC 2 cut(s) 166, 545
ScrFI CCNGG 1 cut(s) 480
SduI GDGCHC 2 cut(s) 167, 384
SfaNI GCATC 1 cut(s) 358
SfcI CTRYAG 2 cut(s) 119, 231
Sse9I AATT 3 cut(s) 254, 429, 543
SsiI CCGC 3 cut(s) 6, 220, 262
StyD4I CCNGG 1 cut(s) 478
StyI CCWWGG 1 cut(s) 502
TaaI ACNGT 2 cut(s) 146, 280
TaiI ACGT 1 cut(s) 152
TaqI TCGA 1 cut(s) 384
TasI AATT 3 cut(s) 254, 429, 543
TatI WGTACW 1 cut(s) 330
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 4 cut(s) 49, 74, 124, 473
Tru1I TTAA 1 cut(s) 542
Tru9I TTAA 1 cut(s) 542
TscAI CASTG 1 cut(s) 285
TseFI GTSAC 1 cut(s) 482
TseI GCWGC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 482
TspDTI ATGAA 2 cut(s) 480, 528
TspRI CASTG 1 cut(s) 285
XapI RAATTY 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.