Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007687

Physical Location & Seq

Genomic Coordinates Forward (+)

9512707 .. 9515990

Gene Structure 3284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G082000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTACATAGAAAACGACGCCGTCTCATTCTTGCTTCCAAGTTCCAAATTCCAATCCCATATCCTTCCACGTATCCAATTCCAGAGGCTCCACTTTTGTTTTCCAAAAATGGCAGTTCACTCTCTGTCCAAGCTTCCAACATCTACCACAGCTCTCATTCCCAATCACAGAACTAAACCCGGCCTAGATTCGCCACCTCTGACGCGGAATTTGAGACACGACGGTTTGCAGAAGCCATGGCTGGGAGCCAACAGTCTCTCGCTTCAGTCCTCAAGCCTCAGAGTCAGAACCCAAGAGCCAAAGCTACGACCTTTCTCTGCCACAGTCTGCCTCAGCCTCCCTACTGCAAATGCGGAAGGAGTTTCATTCACTGAGAAAGTGCCCAAATGGTCTTGGAGGGCTATAAAGTCATTTGCCATGGGTGAATTGGAAGCCAGGAAGCTCAAGTATGCAACTACTGGGACTGAAGCAATTCTCATGGGTATCCTCATAGAGGGAACCAGTCTGGCTGCAAAATTTTTACGGGCAAATGGAATTACACTTTTCAAGGTTCGTGAAGAAACGATCAAGTTACTTGGGAAAGCTGACATGTGGTTCTTCAGTCCTGAGCATCCCACATTGACTGAGGAAGCTCAAAGAGTGCTTGATTGGGCTGTTGACAAAAAGCTAAAATCTGGTGATAGTGGGGAAATTACAACATCTCATCTGCTTCTTGGCATTTGGTACGAAGTGGAATCGCCGGGTCAAAAGATACTGGCTACCCTAGGCTTCAATGAAGAGAAAGTTAAAGAGCTGGAGTCTCTTAAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0019899 GO:0019900 GO:0019901 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clp_N

Protein Analysis

271

Amino Acids

30.28

Weight (kDa)

9.45

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12060
fragaria_vesca	FvH4_5g00880
malus_domestica	MD06G1067100.v1.1 MD17G1137600.v1.1
prunus_persica	Prupe.5G082000_v2.0.a1 Prupe.5G082000_v2.0.a1
pyrus_communis	pycom04g06840 pycom06g06470
rosa_chinensis	RchiOBHm_Chr7g0200491 RchiOBHm_Chr7g0200901
rosa_laevigata	RLG00000003721
rosa_multiflora	Rmu_sc0000617.1_g000023 Rmu_sc0000708.1_g000019
rosa_roxburghii	Rroxscaffold_3G00255920
rosa_rugosa	Rorug07G0060500 Rorug07G0060500
rosa_samantha	Rh7AG186300 Rh7BG189100 Rh7CG196400 Rh7CG196900 Rh7DG190300 Rh7DG192200
rosa_wichuraiana	Rw7G016320 Rw7G016400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	205
AciI	CCGC	2 cut(s)	205, 353
AcsI	RAATTY	3 cut(s)	47, 208, 515
AcuI	CTGAAG	3 cut(s)	248, 486, 583
AcyI	GRCGYC	1 cut(s)	18
AfaI	GTAC	2 cut(s)	5, 725
AfiI	CCNNNNNNNGG	2 cut(s)	242, 493
AflII	CTTAAG	1 cut(s)	803
AflIII	ACRYGT	1 cut(s)	588
AgsI	TTSAA	2 cut(s)	547, 772
AjnI	CCWGG	1 cut(s)	434
AluBI	AGCT	8 cut(s)	133, 152, 304, 442, 584, 632, 667, 793
AluI	AGCT	8 cut(s)	133, 152, 304, 442, 584, 632, 667, 793
Alw26I	GTCTC	4 cut(s)	28, 208, 260, 804
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	509
ApoI	RAATTY	3 cut(s)	47, 208, 515
ArsI	GACNNNNNNTTYG	2 cut(s)	193, 225
Asp700I	GAANNNNTTC	1 cut(s)	471
AspA2I	CCTAGG	1 cut(s)	763
AsuC2I	CCSGG	2 cut(s)	180, 741
AsuHPI	GGTGA	2 cut(s)	434, 689
AvrII	CCTAGG	1 cut(s)	763
BaeGI	GKGCMC	1 cut(s)	384
BbvCI	CCTCAGC	1 cut(s)	332
BbvI	GCAGC	1 cut(s)	496
BceAI	ACGGC	1 cut(s)	5
BciT130I	CCWGG	1 cut(s)	436
BciVI	GTATCC	2 cut(s)	83, 494
BcnI	CCSGG	2 cut(s)	180, 741
BcoDI	GTCTC	4 cut(s)	28, 208, 260, 804
BfaI	CTAG	2 cut(s)	185, 764
BfrI	CTTAAG	1 cut(s)	803
BfuI	GTATCC	2 cut(s)	83, 494
BisI	GCNGC	1 cut(s)	510
BlnI	CCTAGG	1 cut(s)	763
BlsI	GCNGC	1 cut(s)	511
Bme1390I	CCNGG	3 cut(s)	180, 436, 741
BmiI	GGNNCC	3 cut(s)	89, 247, 499
BmrFI	CCNGG	3 cut(s)	180, 436, 741
BmrI	ACTGGG	1 cut(s)	468
BmsI	GCATC	1 cut(s)	619
BmuI	ACTGGG	1 cut(s)	468
Bpu10I	CCTNAGC	2 cut(s)	332, 606
BpuEI	CTTGAG	2 cut(s)	256, 428
BpuMI	CCSGG	2 cut(s)	180, 741
BsaAI	YACGTR	1 cut(s)	71
BsaHI	GRCGYC	1 cut(s)	18
BsaJI	CCNNGG	3 cut(s)	236, 417, 763
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 493
Bse1I	ACTGG	3 cut(s)	463, 501, 759
BseBI	CCWGG	1 cut(s)	436
BseDI	CCNNGG	3 cut(s)	236, 417, 763
BseGI	GGATG	1 cut(s)	610
BseLI	CCNNNNNNNGG	2 cut(s)	242, 493
BseMII	CTCAG	5 cut(s)	292, 346, 363, 597, 615
BseNI	ACTGG	3 cut(s)	463, 501, 759
BseSI	GKGCMC	1 cut(s)	384
BseXI	GCAGC	1 cut(s)	496
BseYI	CCCAGC	1 cut(s)	241
Bsh1236I	CGCG	1 cut(s)	205
BshFI	GGCC	1 cut(s)	183
BsiSI	CCGG	2 cut(s)	180, 740
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	2 cut(s)	242, 493
BsmAI	GTCTC	4 cut(s)	28, 208, 260, 804
BsmBI	CGTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	475
BsnI	GGCC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	564
Bsp19I	CCATGG	2 cut(s)	236, 417
BspACI	CCGC	2 cut(s)	205, 353
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	5 cut(s)	291, 345, 364, 598, 616
BspFNI	CGCG	1 cut(s)	205
BspLI	GGNNCC	3 cut(s)	89, 247, 499
BspTI	CTTAAG	1 cut(s)	803
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	3 cut(s)	463, 501, 759
BssECI	CCNNGG	3 cut(s)	236, 417, 763
BssMI	GATC	1 cut(s)	564
BssNI	GRCGYC	1 cut(s)	18
BssT1I	CCWWGG	3 cut(s)	236, 417, 763
Bst2UI	CCWGG	1 cut(s)	436
Bst4CI	ACNGT	3 cut(s)	224, 254, 325
Bst6I	CTCTTC	1 cut(s)	771
BstACI	GRCGYC	1 cut(s)	18
BstAFI	CTTAAG	1 cut(s)	803
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	71
BstDEI	CTNAG	5 cut(s)	278, 332, 372, 606, 624
BstDSI	CCRYGG	2 cut(s)	236, 417
BstENI	CCTNNNNNAGG	1 cut(s)	491
BstF5I	GGATG	1 cut(s)	610
BstFNI	CGCG	1 cut(s)	205
BstKTI	GATC	1 cut(s)	567
BstMAI	GTCTC	4 cut(s)	28, 208, 260, 804
BstMBI	GATC	1 cut(s)	564
BstNI	CCWGG	1 cut(s)	436
BstNSI	RCATGY	1 cut(s)	592
BstSCI	CCNGG	3 cut(s)	178, 434, 739
BstSLI	GKGCMC	1 cut(s)	384
BstUI	CGCG	1 cut(s)	205
BstV1I	GCAGC	1 cut(s)	496
BsuI	GTATCC	2 cut(s)	83, 494
BsuRI	GGCC	1 cut(s)	183
BtgI	CCRYGG	2 cut(s)	236, 417
BtsCI	GGATG	1 cut(s)	610
BtsIMutI	CAGTG	1 cut(s)	369
CseI	GACGC	2 cut(s)	26, 211
Csp6I	GTAC	2 cut(s)	4, 724
CviAII	CATG	4 cut(s)	237, 418, 478, 589
CviQI	GTAC	2 cut(s)	4, 724
DdeI	CTNAG	5 cut(s)	278, 332, 372, 606, 624
DpnI	GATC	1 cut(s)	566
DpnII	GATC	1 cut(s)	564
Eam1104I	CTCTTC	1 cut(s)	771
EarI	CTCTTC	1 cut(s)	771
Eco130I	CCWWGG	3 cut(s)	236, 417, 763
Eco57I	CTGAAG	3 cut(s)	248, 486, 583
EcoNI	CCTNNNNNAGG	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	434
EcoT14I	CCWWGG	3 cut(s)	236, 417, 763
ErhI	CCWWGG	3 cut(s)	236, 417, 763
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	4 cut(s)	240, 421, 481, 592
FaiI	YATR	9 cut(s)	8, 60, 238, 404, 419, 450, 479, 491, 590
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	4 cut(s)	236, 417, 477, 588
Fnu4HI	GCNGC	1 cut(s)	510
FokI	GGATG	1 cut(s)	597
Fsp4HI	GCNGC	1 cut(s)	510
FspBI	CTAG	2 cut(s)	185, 764
GluI	GCNGC	1 cut(s)	510
GsaI	CCCAGC	1 cut(s)	245
HaeIII	GGCC	1 cut(s)	183
HapII	CCGG	2 cut(s)	180, 740
HgaI	GACGC	2 cut(s)	26, 211
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	4 cut(s)	240, 421, 481, 592
HincII	GTYRAC	1 cut(s)	658
HindII	GTYRAC	1 cut(s)	658
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	4 cut(s)	188, 282, 734, 797
HpaII	CCGG	2 cut(s)	180, 740
HphI	GGTGA	2 cut(s)	434, 689
Hpy166II	GTNNAC	2 cut(s)	118, 658
Hpy188I	TCNGA	3 cut(s)	201, 281, 287
Hpy188III	TCNNGA	3 cut(s)	82, 554, 605
Hpy8I	GTNNAC	2 cut(s)	118, 658
Hpy99I	CGWCG	2 cut(s)	20, 224
HpyAV	CCTTC	2 cut(s)	74, 350
HpyCH4III	ACNGT	3 cut(s)	224, 254, 325
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	4 cut(s)	229, 347, 452, 512
HpyF3I	CTNAG	5 cut(s)	278, 332, 372, 606, 624
HpySE526I	ACGT	1 cut(s)	70
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	4 cut(s)	240, 421, 481, 592
Kzo9I	GATC	1 cut(s)	564
LmnI	GCTCC	2 cut(s)	93, 245
Lsp1109I	GCAGC	1 cut(s)	496
LweI	GCATC	1 cut(s)	619
MaeI	CTAG	2 cut(s)	185, 764
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	1 cut(s)	570
MalI	GATC	1 cut(s)	566
MboI	GATC	1 cut(s)	564
MboII	GAAGA	3 cut(s)	569, 589, 788
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	8 cut(s)	47, 77, 208, 425, 471, 515, 534, 690
MlyI	GAGTC	2 cut(s)	291, 806
MmeI	TCCRAC	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	471
MseI	TTAA	2 cut(s)	786, 804
MspCI	CTTAAG	1 cut(s)	803
MspI	CCGG	2 cut(s)	180, 740
MspR9I	CCNGG	3 cut(s)	180, 436, 741
MvaI	CCWGG	1 cut(s)	436
MvnI	CGCG	1 cut(s)	205
NciI	CCSGG	2 cut(s)	180, 741
NcoI	CCATGG	2 cut(s)	236, 417
NdeII	GATC	1 cut(s)	564
NlaIII	CATG	4 cut(s)	240, 421, 481, 592
NlaIV	GGNNCC	3 cut(s)	89, 247, 499
NspI	RCATGY	1 cut(s)	592
PciI	ACATGT	1 cut(s)	588
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	2 cut(s)	188, 734
PflFI	GACNNNGTC	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	511
PleI	GAGTC	2 cut(s)	290, 805
PpsI	GAGTC	2 cut(s)	290, 805
Ppu21I	YACGTR	1 cut(s)	71
PscI	ACATGT	1 cut(s)	588
Psp6I	CCWGG	1 cut(s)	434
PspFI	CCCAGC	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	434
PspN4I	GGNNCC	3 cut(s)	89, 247, 499
PsyI	GACNNNGTC	1 cut(s)	20
RsaI	GTAC	2 cut(s)	5, 725
RsaNI	GTAC	2 cut(s)	4, 724
SaqAI	TTAA	2 cut(s)	786, 804
SatI	GCNGC	1 cut(s)	510
Sau3AI	GATC	1 cut(s)	564
SchI	GAGTC	2 cut(s)	291, 806
ScrFI	CCNGG	3 cut(s)	180, 436, 741
SduI	GDGCHC	1 cut(s)	384
SfaNI	GCATC	1 cut(s)	619
SmlI	CTYRAG	3 cut(s)	271, 443, 803
SmoI	CTYRAG	3 cut(s)	271, 443, 803
Sse9I	AATT	8 cut(s)	47, 77, 208, 425, 471, 515, 534, 690
SsiI	CCGC	2 cut(s)	205, 353
SspMI	CTAG	2 cut(s)	185, 764
StyD4I	CCNGG	3 cut(s)	178, 434, 739
StyI	CCWWGG	3 cut(s)	236, 417, 763
TaaI	ACNGT	3 cut(s)	224, 254, 325
TaiI	ACGT	1 cut(s)	73
TasI	AATT	8 cut(s)	47, 77, 208, 425, 471, 515, 534, 690
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	188, 734
Tru1I	TTAA	2 cut(s)	786, 804
Tru9I	TTAA	2 cut(s)	786, 804
TscAI	CASTG	1 cut(s)	376
TseI	GCWGC	1 cut(s)	509
TspDTI	ATGAA	2 cut(s)	354, 789
TspRI	CASTG	1 cut(s)	376
Tth111I	GACNNNGTC	1 cut(s)	20
Vha464I	CTTAAG	1 cut(s)	803
XagI	CCTNNNNNAGG	1 cut(s)	491
XapI	RAATTY	3 cut(s)	47, 208, 515
XceI	RCATGY	1 cut(s)	592
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424
XmaJI	CCTAGG	1 cut(s)	763
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	2 cut(s)	185, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.