AT4G13530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0008074
Physical Location & Seq
Forward (+)
7866328 .. 7869176
2849 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G13530.1

Sequence Viewer

Length: 813 bp
ATGGAAGGAGAGATTCAAGACTGGGAAATACTTCAGAGCTCGAGATCTACCACGGAAGATGACAATTCGAGGAGCTTGGAGGAGATTGATGATGGCACGCAAGGTATGATTAGGTTTGATCATTTCTCTCTTGAGAACCAGAGTGGTTTGTCTCGTTTGGAGGCAAACGATGAAGATGGGTCTGTTCAATCGGGTAGTCCAGGATGGATCGAACCTAGCTCCGATGTTCCTTATGGTCCGAAGCATTTTAGTGAGTTATGGTCTGATTCAAGCAGTGATCGGCTTGATGATCAGAGGTTAGTGGATGATGATGTGAATAACGAGATGGGTATAGAGAGAAACGAAGTGGGTATTGTTGAATATAGTGAAAGTATAGCTCAAGACATGGATTTGATAAGCTCTGATGAGAGAAAGGAAGAATCTTTACTTCATCCAGTGGAAGGAGAAGGAAACTCTGTTTCTATTGATCCTGGTGTTAAATCTGGTGGTGGAGGAGGAGAAGAGAAAGGGTTTGTGTGGTGGAAAATTCCAATAGAGGTGTTGAAGTATTGTGTGTTGAAAATTAATCCTATTTGGTCTTTGTCCATGGCTGCAGCATTTGTGGGTTTTGTTATGTTAGGGCGTAGATTGTACAATATGAAGAAGAAGACTCGTTCCTTGCAGCTTAAGGTTCTTTTGGATGATAAGAAGGTGGCGAATCATGCTGCTCGGTGGAACGAAGCAATCTCGGTAGTGAAACGTGTGCCCATAATCCGGCCAGCACTTCCGTCATCAGTGGGTATGAACCAGTGGTCCATGATGAGTTTAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

30.22

Weight (kDa)

4.65

Isoelectric Point (pI)

58.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6821 PF20705 177 - 252 8.3e-10 Family of unknown function (DUF6821)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 215, 461
AcoI YGGCCR 1 cut(s) 755
AcsI RAATTY 1 cut(s) 525
AcuI CTGAAG 1 cut(s) 17
AfaI GTAC 1 cut(s) 632
AfiI CCNNNNNNNGG 2 cut(s) 440, 753
AflII CTTAAG 1 cut(s) 665
AflIII ACRYGT 1 cut(s) 739
AgsI TTSAA 6 cut(s) 17, 188, 270, 359, 544, 559
AjnI CCWGG 2 cut(s) 199, 469
AloI GAACNNNNNNTCC 2 cut(s) 776, 808
AluBI AGCT 6 cut(s) 39, 75, 219, 377, 399, 664
AluI AGCT 6 cut(s) 39, 75, 219, 377, 399, 664
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 1 cut(s) 156
AlwI GGATC 2 cut(s) 215, 461
Ama87I CYCGRG 1 cut(s) 40
AoxI GGCC 1 cut(s) 755
ApeKI GCWGC 4 cut(s) 590, 593, 661, 704
ApoI RAATTY 1 cut(s) 525
AseI ATTAAT 1 cut(s) 564
Asp700I GAANNNNTTC 1 cut(s) 30
AspS9I GGNCC 2 cut(s) 236, 792
AvaI CYCGRG 1 cut(s) 40
AvaII GGWCC 2 cut(s) 236, 792
BaeGI GKGCMC 1 cut(s) 747
BanII GRGCYC 1 cut(s) 41
BarI GAAGNNNNNNTAC 2 cut(s) 408, 440
BbsI GAAGAC 1 cut(s) 653
Bbv12I GWGCWC 1 cut(s) 41
BbvI GCAGC 4 cut(s) 577, 605, 673, 691
BccI CCATC 4 cut(s) 86, 170, 198, 319
BciT130I CCWGG 2 cut(s) 201, 471
BclI TGATCA 2 cut(s) 118, 289
BcoDI GTCTC 1 cut(s) 156
BfaI CTAG 1 cut(s) 216
BfmI CTRYAG 1 cut(s) 591
BfrI CTTAAG 1 cut(s) 665
BglII AGATCT 1 cut(s) 44
BisI GCNGC 4 cut(s) 591, 594, 662, 705
BlsI GCNGC 4 cut(s) 592, 595, 663, 706
Bme1390I CCNGG 2 cut(s) 201, 471
Bme18I GGWCC 2 cut(s) 236, 792
BmeT110I CYCGRG 1 cut(s) 40
BmgT120I GGNCC 2 cut(s) 236, 792
BmrFI CCNGG 2 cut(s) 201, 471
BmrI ACTGGG 1 cut(s) 31
BmuI ACTGGG 1 cut(s) 31
BpiI GAAGAC 1 cut(s) 653
BpuEI CTTGAG 2 cut(s) 152, 363
BsaJI CCNNGG 2 cut(s) 51, 585
Bsc4I CCNNNNNNNGG 2 cut(s) 440, 753
Bse1I ACTGG 3 cut(s) 26, 434, 787
BseBI CCWGG 2 cut(s) 201, 471
BseDI CCNNGG 2 cut(s) 51, 585
BseGI GGATG 4 cut(s) 209, 310, 430, 685
BseLI CCNNNNNNNGG 2 cut(s) 440, 753
BseNI ACTGG 3 cut(s) 26, 434, 787
BseRI GAGGAG 4 cut(s) 85, 95, 507, 510
BseSI GKGCMC 1 cut(s) 747
BseXI GCAGC 4 cut(s) 577, 605, 673, 691
BshFI GGCC 1 cut(s) 757
BsiHKAI GWGCWC 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 40
BsiSI CCGG 1 cut(s) 754
BslI CCNNNNNNNGG 2 cut(s) 440, 753
BsmAI GTCTC 1 cut(s) 156
BsnI GGCC 1 cut(s) 757
BsoBI CYCGRG 1 cut(s) 40
Bsp1286I GDGCHC 2 cut(s) 41, 747
Bsp1407I TGTACA 1 cut(s) 630
Bsp143I GATC 6 cut(s) 44, 118, 207, 277, 289, 466
Bsp19I CCATGG 1 cut(s) 585
BspANI GGCC 1 cut(s) 757
BspMAI CTGCAG 1 cut(s) 595
BspPI GGATC 2 cut(s) 215, 461
BspTI CTTAAG 1 cut(s) 665
BsrGI TGTACA 1 cut(s) 630
BsrI ACTGG 3 cut(s) 26, 434, 787
BssECI CCNNGG 2 cut(s) 51, 585
BssMI GATC 6 cut(s) 44, 118, 207, 277, 289, 466
BssT1I CCWWGG 1 cut(s) 585
Bst2UI CCWGG 2 cut(s) 201, 471
Bst6I CTCTTC 1 cut(s) 495
BstAFI CTTAAG 1 cut(s) 665
BstAUI TGTACA 1 cut(s) 630
BstC8I GCNNGC 2 cut(s) 98, 759
BstDSI CCRYGG 2 cut(s) 51, 585
BstF5I GGATG 4 cut(s) 209, 310, 430, 685
BstKTI GATC 6 cut(s) 47, 121, 210, 280, 292, 469
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 6 cut(s) 44, 118, 207, 277, 289, 466
BstMWI GCNNNNNNNGC 1 cut(s) 701
BstNI CCWGG 2 cut(s) 201, 471
BstSCI CCNGG 2 cut(s) 199, 469
BstSFI CTRYAG 1 cut(s) 591
BstSLI GKGCMC 1 cut(s) 747
BstV1I GCAGC 4 cut(s) 577, 605, 673, 691
BstV2I GAAGAC 1 cut(s) 653
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BsuRI GGCC 1 cut(s) 757
BtgI CCRYGG 2 cut(s) 51, 585
BtsCI GGATG 4 cut(s) 209, 310, 430, 685
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 4 cut(s) 280, 441, 780, 794
Cac8I GCNNGC 2 cut(s) 98, 759
Cfr13I GGNCC 2 cut(s) 236, 792
Csp6I GTAC 1 cut(s) 631
CviAII CATG 4 cut(s) 385, 586, 701, 796
CviJI RGCY 9 cut(s) 39, 75, 219, 283, 377, 399, 590, 664, 757
CviKI_1 RGCY 9 cut(s) 39, 75, 219, 283, 377, 399, 590, 664, 757
CviQI GTAC 1 cut(s) 631
DpnI GATC 6 cut(s) 46, 120, 209, 279, 291, 468
DpnII GATC 6 cut(s) 44, 118, 207, 277, 289, 466
EaeI YGGCCR 1 cut(s) 755
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
Ecl136II GAGCTC 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 585
Eco24I GRGCYC 1 cut(s) 41
Eco47I GGWCC 2 cut(s) 236, 792
Eco53kI GAGCTC 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 17
Eco88I CYCGRG 1 cut(s) 40
EcoICRI GAGCTC 1 cut(s) 39
EcoRII CCWGG 2 cut(s) 199, 469
EcoT14I CCWWGG 1 cut(s) 585
EcoT38I GRGCYC 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 585
FaeI CATG 4 cut(s) 388, 589, 704, 799
FatI CATG 4 cut(s) 384, 585, 700, 795
FbaI TGATCA 2 cut(s) 118, 289
Fnu4HI GCNGC 4 cut(s) 591, 594, 662, 705
FokI GGATG 4 cut(s) 216, 317, 417, 692
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 4 cut(s) 591, 594, 662, 705
FspBI CTAG 1 cut(s) 216
GluI GCNGC 4 cut(s) 591, 594, 662, 705
HaeIII GGCC 1 cut(s) 757
HapII CCGG 1 cut(s) 754
Hin1II CATG 4 cut(s) 388, 589, 704, 799
HinfI GANTC 5 cut(s) 13, 266, 419, 649, 697
HpaII CCGG 1 cut(s) 754
Hpy188I TCNGA 6 cut(s) 36, 223, 240, 265, 294, 403
Hpy188III TCNNGA 4 cut(s) 17, 42, 131, 380
HpyAV CCTTC 3 cut(s) 434, 440, 682
HpyCH4IV ACGT 1 cut(s) 739
HpyCH4V TGCA 2 cut(s) 593, 661
HpyF10VI GCNNNNNNNGC 1 cut(s) 701
HpySE526I ACGT 1 cut(s) 739
Hsp92II CATG 4 cut(s) 388, 589, 704, 799
Ksp22I TGATCA 2 cut(s) 118, 289
Kzo9I GATC 6 cut(s) 44, 118, 207, 277, 289, 466
LmnI GCTCC 2 cut(s) 72, 224
Lsp1109I GCAGC 4 cut(s) 577, 605, 673, 691
MaeI CTAG 1 cut(s) 216
MaeII ACGT 1 cut(s) 739
MalI GATC 6 cut(s) 46, 120, 209, 279, 291, 468
MboI GATC 6 cut(s) 44, 118, 207, 277, 289, 466
MboII GAAGA 7 cut(s) 68, 185, 428, 512, 652, 655, 658
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 2 cut(s) 41, 747
MluCI AATT 3 cut(s) 64, 525, 561
MlyI GAGTC 1 cut(s) 643
MnlI CCTC 7 cut(s) 63, 73, 154, 288, 485, 488, 529
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 4 cut(s) 477, 564, 666, 806
MslI CAYNNNNRTG 1 cut(s) 249
MspCI CTTAAG 1 cut(s) 665
MspI CCGG 1 cut(s) 754
MspR9I CCNGG 2 cut(s) 201, 471
MvaI CCWGG 2 cut(s) 201, 471
MwoI GCNNNNNNNGC 1 cut(s) 701
NcoI CCATGG 1 cut(s) 585
NdeII GATC 6 cut(s) 44, 118, 207, 277, 289, 466
NlaIII CATG 4 cut(s) 388, 589, 704, 799
PaeR7I CTCGAG 1 cut(s) 40
PdmI GAANNNNTTC 1 cut(s) 30
PfeI GAWTC 4 cut(s) 13, 266, 419, 697
PfoI TCCNGGA 1 cut(s) 199
PkrI GCNGC 4 cut(s) 592, 595, 663, 706
PleI GAGTC 1 cut(s) 643
PpsI GAGTC 1 cut(s) 643
PshBI ATTAAT 1 cut(s) 564
Psp124BI GAGCTC 1 cut(s) 41
Psp6I CCWGG 2 cut(s) 199, 469
PspGI CCWGG 2 cut(s) 199, 469
PspPI GGNCC 2 cut(s) 236, 792
PstI CTGCAG 1 cut(s) 595
PsuI RGATCY 1 cut(s) 44
RsaI GTAC 1 cut(s) 632
RsaNI GTAC 1 cut(s) 631
RseI CAYNNNNRTG 1 cut(s) 249
SacI GAGCTC 1 cut(s) 41
SaqAI TTAA 4 cut(s) 477, 564, 666, 806
SatI GCNGC 4 cut(s) 591, 594, 662, 705
Sau3AI GATC 6 cut(s) 44, 118, 207, 277, 289, 466
Sau96I GGNCC 2 cut(s) 236, 792
SchI GAGTC 1 cut(s) 643
ScrFI CCNGG 2 cut(s) 201, 471
SduI GDGCHC 2 cut(s) 41, 747
SfcI CTRYAG 1 cut(s) 591
Sfr274I CTCGAG 1 cut(s) 40
SinI GGWCC 2 cut(s) 236, 792
SlaI CTCGAG 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 4 cut(s) 40, 131, 378, 665
SmoI CTYRAG 4 cut(s) 40, 131, 378, 665
Sse9I AATT 3 cut(s) 64, 525, 561
SspMI CTAG 1 cut(s) 216
SstI GAGCTC 1 cut(s) 41
StyD4I CCNGG 2 cut(s) 199, 469
StyI CCWWGG 1 cut(s) 585
TaiI ACGT 1 cut(s) 742
TaqI TCGA 3 cut(s) 41, 68, 210
TasI AATT 3 cut(s) 64, 525, 561
TatI WGTACW 1 cut(s) 630
TfiI GAWTC 4 cut(s) 13, 266, 419, 697
Tru1I TTAA 4 cut(s) 477, 564, 666, 806
Tru9I TTAA 4 cut(s) 477, 564, 666, 806
TscAI CASTG 4 cut(s) 280, 441, 780, 794
TseI GCWGC 4 cut(s) 590, 593, 661, 704
TspDTI ATGAA 4 cut(s) 186, 419, 653, 797
TspGWI ACGGA 2 cut(s) 68, 756
TspRI CASTG 4 cut(s) 280, 441, 780, 794
Vha464I CTTAAG 1 cut(s) 665
VpaK11BI GGWCC 2 cut(s) 236, 792
VspI ATTAAT 1 cut(s) 564
XapI RAATTY 1 cut(s) 525
XhoI CTCGAG 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 30
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.