Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0008074

Physical Location & Seq

Genomic Coordinates Forward (+)

42994295 .. 43008800

Gene Structure 14506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG360700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAAGAATGGTCAGGAGGATACTCACACCAATAACAAGACTTCAGGAAGGGTTTTTGCACTATCAAGGAAGGAGGCTAAAGCATCGCCATCTGGGGTGGCAGGTGGGTTATGGTCAAATTCGGCCAATGATCGGTCTGATGACCGGAAATGTCATGATTTTGAGGTGAGAAGCGAGTTGGGTTTCGCCGGAAATGAGCAAAGTCGTGTGCTTTCGGAGCCTGTGGAGGAGAGTTTGGGGAAATTCGGGTCGGATGAGGCGGAAGTGAAAGCGAGTTTCCAAGAAATTGGGGAAGTTGGAAGCTTTGATAAGGATTCAGACAAGTTTCGGTCTGATTCTGGCCGAGAAAGCTTGGTTTCTGTGAAATTTGACAAGGAGGGTGGTTCAAGTGACTCGAACAAGGAATCAGCAGATGAAGCATCGGCTGAGACTCAAAGTGTTGCAGTGGAAGAAGTGAAAACGGTGGCGAAGTCGGGTGGTGAGGGTGAGAAGAGGGTGGTCTTGTGGTGGAAGCTAGGTTCCATTGGAGGTGTTGATGAAGTATTGCGTTTTCAAGGTGAGTCCTGTTTGGTCTTTCTCTATGCCGCAGCAGTAATGGGTTTAGTTATCTTAGGAAGGAGATTGTATAGGATGAAGCGAAAGAGCCAGAGCTTGCAACTCAAAGTTGCTCCGGATGATAAGGTTAGTTGTTGCGATTCATTATTAGCTAATGTGTTTATAGTTGTTCTTACTTCATGTTTATTCGGTGCCGGTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

252

Amino Acids

27.19

Weight (kDa)

5.23

Isoelectric Point (pI)

53.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13530 AT4G13530
fragaria_vesca	FvH4_2g00770 FvH4_2g00770
malus_domestica	MD05G1003400.v1.1 MD10G1004400.v1.1
prunus_persica	Prupe.8G006800_v2.0.a1 Prupe.8G006800_v2.0.a1
pyrus_communis	pycom05g00310 pycom10g00350
rosa_chinensis	RchiOBHm_Chr6g0251151
rosa_laevigata	RLG00000015479
rosa_multiflora	Rmu_sc0001307.1_g000016 Rmu_sc0002219.1_g000020 Rmu_sc0014052.1_g000003
rosa_roxburghii	Rroxscaffold_1G00032260 Rroxscaffold_7G00216990
rosa_rugosa	Rorug05G0500600
rosa_samantha	Rh5CG360700 Rh6AG009700 Rh6BG002200 Rh6CG006400 Rh6DG006800
rosa_wichuraiana	Rw6G000970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	92
AccB1I	GGYRCC	1 cut(s)	746
AccIII	TCCGGA	1 cut(s)	670
AciI	CCGC	2 cut(s)	260, 585
AcoI	YGGCCR	2 cut(s)	123, 340
AcsI	RAATTY	3 cut(s)	118, 242, 365
AcuI	CTGAAG	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	132
AgsI	TTSAA	2 cut(s)	387, 554
AloI	GAACNNNNNNTCC	2 cut(s)	502, 534
AluBI	AGCT	5 cut(s)	303, 351, 514, 651, 707
AluI	AGCT	5 cut(s)	303, 351, 514, 651, 707
Alw26I	GTCTC	1 cut(s)	422
Aor13HI	TCCGGA	1 cut(s)	670
AoxI	GGCC	2 cut(s)	123, 340
ApeKI	GCWGC	1 cut(s)	587
ApoI	RAATTY	3 cut(s)	118, 242, 365
AsuHPI	GGTGA	4 cut(s)	178, 491, 497, 569
BanI	GGYRCC	1 cut(s)	746
BbvI	GCAGC	1 cut(s)	599
BccI	CCATC	1 cut(s)	97
BciVI	GTATCC	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	1 cut(s)	515
BfuAI	ACCTGC	1 cut(s)	92
BfuI	GTATCC	1 cut(s)	13
BisI	GCNGC	2 cut(s)	585, 588
BlsI	GCNGC	2 cut(s)	586, 589
BmiI	GGNNCC	3 cut(s)	219, 520, 748
BmsI	GCATC	2 cut(s)	92, 428
BsaWI	WCCGGW	2 cut(s)	144, 670
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse118I	RCCGGY	1 cut(s)	749
BseAI	TCCGGA	1 cut(s)	670
BseGI	GGATG	3 cut(s)	259, 636, 679
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	417
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	599
BshFI	GGCC	2 cut(s)	125, 342
BshNI	GGYRCC	1 cut(s)	746
BsiSI	CCGG	4 cut(s)	145, 189, 671, 750
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmAI	GTCTC	1 cut(s)	422
BsnI	GGCC	2 cut(s)	125, 342
Bsp13I	TCCGGA	1 cut(s)	670
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	2 cut(s)	260, 585
BspANI	GGCC	2 cut(s)	125, 342
BspCNI	CTCAG	1 cut(s)	418
BspEI	TCCGGA	1 cut(s)	670
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	3 cut(s)	219, 520, 748
BspMI	ACCTGC	1 cut(s)	92
BspT107I	GGYRCC	1 cut(s)	746
BsrFI	RCCGGY	1 cut(s)	749
BssAI	RCCGGY	1 cut(s)	749
BssMI	GATC	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	463
Bst6I	CTCTTC	1 cut(s)	485
BstC8I	GCNNGC	1 cut(s)	653
BstDEI	CTNAG	2 cut(s)	426, 610
BstF5I	GGATG	3 cut(s)	259, 636, 679
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	3 cut(s)	217, 348, 416
BstV1I	GCAGC	1 cut(s)	599
BstXI	CCANNNNNNTGG	1 cut(s)	287
BsuI	GTATCC	1 cut(s)	13
BsuRI	GGCC	2 cut(s)	125, 342
BtgZI	GCGATG	1 cut(s)	69
BtsCI	GGATG	3 cut(s)	259, 636, 679
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	1 cut(s)	450
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	653
CciI	TCATGA	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	749
CspCI	CAANNNNNGTGG	2 cut(s)	361, 396
CviAII	CATG	2 cut(s)	155, 735
DdeI	CTNAG	2 cut(s)	426, 610
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
EaeI	YGGCCR	2 cut(s)	123, 340
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
EciI	GGCGGA	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	27
FaeI	CATG	2 cut(s)	158, 738
FaiI	YATR	8 cut(s)	112, 156, 582, 627, 719, 736, 755, 757
FatI	CATG	2 cut(s)	154, 734
Fnu4HI	GCNGC	2 cut(s)	585, 588
FokI	GGATG	3 cut(s)	266, 643, 686
Fsp4HI	GCNGC	2 cut(s)	585, 588
FspBI	CTAG	1 cut(s)	515
GluI	GCNGC	2 cut(s)	585, 588
HaeIII	GGCC	2 cut(s)	125, 342
HapII	CCGG	4 cut(s)	145, 189, 671, 750
Hin1II	CATG	2 cut(s)	158, 738
HindIII	AAGCTT	2 cut(s)	301, 349
HinfI	GANTC	7 cut(s)	314, 335, 392, 404, 430, 560, 695
HpaII	CCGG	4 cut(s)	145, 189, 671, 750
HphI	GGTGA	4 cut(s)	178, 491, 497, 569
Hpy188I	TCNGA	5 cut(s)	139, 217, 253, 319, 334
Hpy188III	TCNNGA	4 cut(s)	14, 45, 155, 671
HpyAV	CCTTC	3 cut(s)	42, 64, 609
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4V	TGCA	3 cut(s)	59, 443, 655
HpyF10VI	GCNNNNNNNGC	3 cut(s)	217, 348, 416
HpyF3I	CTNAG	2 cut(s)	426, 610
Hsp92II	CATG	2 cut(s)	158, 738
Kpn2I	TCCGGA	1 cut(s)	670
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	2 cut(s)	217, 673
Lsp1109I	GCAGC	1 cut(s)	599
LweI	GCATC	2 cut(s)	92, 428
MaeI	CTAG	1 cut(s)	515
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	3 cut(s)	16, 461, 502
MluCI	AATT	4 cut(s)	118, 242, 285, 365
MlyI	GAGTC	3 cut(s)	386, 424, 569
MmeI	TCCRAC	2 cut(s)	231, 277
MnlI	CCTC	9 cut(s)	10, 67, 157, 220, 250, 370, 475, 486, 521
MroI	TCCGGA	1 cut(s)	670
MspI	CCGG	4 cut(s)	145, 189, 671, 750
MwoI	GCNNNNNNNGC	3 cut(s)	217, 348, 416
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	158, 738
NlaIV	GGNNCC	3 cut(s)	219, 520, 748
NmeAIII	GCCGAG	1 cut(s)	368
NmuCI	GTSAC	1 cut(s)	389
PagI	TCATGA	1 cut(s)	154
PaqCI	CACCTGC	1 cut(s)	92
PfeI	GAWTC	4 cut(s)	314, 335, 404, 695
PkrI	GCNGC	2 cut(s)	586, 589
PleI	GAGTC	3 cut(s)	386, 424, 568
PpsI	GAGTC	3 cut(s)	386, 424, 568
PspN4I	GGNNCC	3 cut(s)	219, 520, 748
SatI	GCNGC	2 cut(s)	585, 588
Sau3AI	GATC	1 cut(s)	130
SchI	GAGTC	3 cut(s)	386, 424, 569
SfaNI	GCATC	2 cut(s)	92, 428
Sse9I	AATT	4 cut(s)	118, 242, 285, 365
SsiI	CCGC	2 cut(s)	260, 585
SspMI	CTAG	1 cut(s)	515
TaaI	ACNGT	1 cut(s)	463
TaqI	TCGA	1 cut(s)	395
TaqII	GACCGA	2 cut(s)	123, 318
TasI	AATT	4 cut(s)	118, 242, 285, 365
TauI	GCSGC	1 cut(s)	587
TfiI	GAWTC	4 cut(s)	314, 335, 404, 695
TscAI	CASTG	1 cut(s)	450
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	1 cut(s)	587
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	6 cut(s)	17, 429, 552, 647, 687, 723
TspRI	CASTG	1 cut(s)	450
XapI	RAATTY	3 cut(s)	118, 242, 365
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.