Rroxscaffold_7G00216990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0008074
Physical Location & Seq
Forward (+)
67591396 .. 67595028
3633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00216990.1

Sequence Viewer

Length: 957 bp
ATGGAAGGAGGAGAAATTGGGGAGTTGCAGGACTGGGAGGTCCTCCACAGCGCGGAGGAGGAGAAGGAGCCGGCCGCCCCGGTCGAAAGCCATGGAAGCTTCTCGTCGATTGAGGCTGACGCCGAGGGGATGATCAGGTCTGATTATTTCTCGTTGGAGAATCAGGGGAGGTATGGCTATGCTAAGAGTGAAGAGGGTTCGGTTGAGTCCGATAACCCGAGCTGGATTGACCCGGTTCAGGTGACTGCGTATAAGGAATCGGGTGGGTTCTGGTCCGATTCCGCCAGTGATCGGTCCGATGACCGGAAAAGTCATGATTTTGAGGTGAGAGGCGAGTTGGGTTTCGCCGGAAATGAGCAAAGTCCTGTGCTTTCGGAGCCTGTGGAGGAGAGTTTGGGGAAATTCGGGTCGGATGAGGCGGAAGGGAAAGTGAGTTTCCAAGAAATTGGGGAGGTTGGAAGCTTTGATAAGGATTCAGGCAAGTGCTGGTCTGATTCCGGCGGAGAAAGCTTGGTTTCTGTGAAATTTGGCAAGGAGGATGGTTCAAGTGACTCGAACAAGGAATCAGCAGATGAAGAATCGGCTGAGACTGCAGTGGAAGAAGTGAAAACGGTGGCGAAATCGGGTGATGAGGGTGAGAAGAAGCTGGTCTTGTGGTGGAAGGTTCCATTGGAGGTCTTGAAGTATTGTGTTTTCAAGGTGAGCCCTGTTTGGTCTTTCTCTGTGGCCGCAGCAGTAATGGGTTTAGTTATCTTGGGAAGGAGATTGTATAGGATGAAGCGAAAGAGCAAGAGCGTGCACTTCAGAGTTGCTATGGATGATAAGAAGGTATCTCAATTCATGAGTCGTGCTGTGCGTCTCAATGAAGCATTTTCAGTTGTGAGGCGGGTTCCTATTGTACGACCTTCACTGCCGGCAGCTGGAGTCAATCCATGGCCTGTGATGAGTTTGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

34.97

Weight (kDa)

4.78

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6821 PF20705 187 - 303 3.9e-15 Family of unknown function (DUF6821)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 38
AccII CGCG 1 cut(s) 53
AciI CCGC 7 cut(s) 53, 75, 282, 419, 501, 729, 886
AcoI YGGCCR 2 cut(s) 72, 726
AcsI RAATTY 2 cut(s) 401, 524
AcuI CTGAAG 1 cut(s) 787
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 1 cut(s) 900
AfiI CCNNNNNNNGG 5 cut(s) 52, 238, 291, 303, 920
AgsI TTSAA 3 cut(s) 546, 682, 697
AjuI GAANNNNNNNTTGG 2 cut(s) 653, 685
AluBI AGCT 6 cut(s) 99, 222, 462, 510, 646, 920
AluI AGCT 6 cut(s) 99, 222, 462, 510, 646, 920
Alw21I GWGCWC 1 cut(s) 801
Alw26I GTCTC 2 cut(s) 581, 863
Alw44I GTGCAC 1 cut(s) 797
Ama87I CYCGRG 1 cut(s) 217
AoxI GGCC 3 cut(s) 72, 726, 935
ApaLI GTGCAC 1 cut(s) 797
ApeKI GCWGC 2 cut(s) 731, 917
ApoI RAATTY 2 cut(s) 401, 524
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 3 cut(s) 40, 273, 294
AsuC2I CCSGG 2 cut(s) 80, 233
AsuHPI GGTGA 5 cut(s) 253, 337, 638, 647, 712
AvaI CYCGRG 1 cut(s) 217
AvaII GGWCC 3 cut(s) 40, 273, 294
BaeGI GKGCMC 1 cut(s) 801
BanII GRGCYC 1 cut(s) 707
Bbv12I GWGCWC 1 cut(s) 801
BbvI GCAGC 2 cut(s) 743, 929
BccI CCATC 1 cut(s) 533
BclI TGATCA 1 cut(s) 132
BcnI CCSGG 2 cut(s) 80, 233
BcoDI GTCTC 2 cut(s) 581, 863
BfmI CTRYAG 1 cut(s) 591
BisI GCNGC 4 cut(s) 75, 729, 732, 918
BlsI GCNGC 4 cut(s) 76, 730, 733, 919
Bme1390I CCNGG 2 cut(s) 80, 233
Bme18I GGWCC 3 cut(s) 40, 273, 294
BmeT110I CYCGRG 1 cut(s) 217
BmgT120I GGNCC 3 cut(s) 40, 273, 294
BmiI GGNNCC 4 cut(s) 69, 378, 666, 891
BmrFI CCNGG 2 cut(s) 80, 233
BmrI ACTGGG 1 cut(s) 43
BmuI ACTGGG 1 cut(s) 43
BpmI CTGGAG 1 cut(s) 942
BpuMI CCSGG 2 cut(s) 80, 233
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 4 cut(s) 78, 91, 123, 932
BsaWI WCCGGW 1 cut(s) 303
Bsc4I CCNNNNNNNGG 5 cut(s) 52, 238, 291, 303, 920
Bse118I RCCGGY 2 cut(s) 70, 913
Bse1I ACTGG 2 cut(s) 38, 285
BseDI CCNNGG 4 cut(s) 78, 91, 123, 932
BseGI GGATG 5 cut(s) 135, 418, 544, 780, 823
BseLI CCNNNNNNNGG 5 cut(s) 52, 238, 291, 303, 920
BseMII CTCAG 1 cut(s) 576
BseNI ACTGG 2 cut(s) 38, 285
BseRI GAGGAG 4 cut(s) 24, 71, 74, 401
BseSI GKGCMC 1 cut(s) 801
BseX3I CGGCCG 1 cut(s) 72
BseXI GCAGC 2 cut(s) 743, 929
Bsh1236I CGCG 1 cut(s) 53
Bsh1285I CGRYCG 2 cut(s) 75, 84
BshFI GGCC 3 cut(s) 74, 728, 937
BsiEI CGRYCG 2 cut(s) 75, 84
BsiHKAI GWGCWC 1 cut(s) 801
BsiHKCI CYCGRG 1 cut(s) 217
BsiSI CCGG 7 cut(s) 71, 80, 233, 304, 348, 498, 914
BslI CCNNNNNNNGG 5 cut(s) 52, 238, 291, 303, 920
BsmAI GTCTC 2 cut(s) 581, 863
BsmBI CGTCTC 1 cut(s) 863
BsnI GGCC 3 cut(s) 74, 728, 937
BsoBI CYCGRG 1 cut(s) 217
Bsp1286I GDGCHC 2 cut(s) 707, 801
Bsp143I GATC 2 cut(s) 132, 289
Bsp19I CCATGG 2 cut(s) 91, 932
BspACI CCGC 7 cut(s) 53, 75, 282, 419, 501, 729, 886
BspANI GGCC 3 cut(s) 74, 728, 937
BspCNI CTCAG 1 cut(s) 577
BspFNI CGCG 1 cut(s) 53
BspHI TCATGA 2 cut(s) 313, 840
BspLI GGNNCC 4 cut(s) 69, 378, 666, 891
BspMAI CTGCAG 1 cut(s) 595
BsrFI RCCGGY 2 cut(s) 70, 913
BsrI ACTGG 2 cut(s) 38, 285
BssAI RCCGGY 2 cut(s) 70, 913
BssECI CCNNGG 4 cut(s) 78, 91, 123, 932
BssMI GATC 2 cut(s) 132, 289
BssNI GRCGYC 1 cut(s) 120
BssT1I CCWWGG 2 cut(s) 91, 932
Bst4CI ACNGT 1 cut(s) 613
Bst6I CTCTTC 1 cut(s) 186
BstACI GRCGYC 1 cut(s) 120
BstC8I GCNNGC 3 cut(s) 72, 797, 915
BstDEI CTNAG 2 cut(s) 183, 585
BstDSI CCRYGG 2 cut(s) 91, 932
BstF5I GGATG 5 cut(s) 135, 418, 544, 780, 823
BstFNI CGCG 1 cut(s) 53
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 2 cut(s) 135, 292
BstMAI GTCTC 2 cut(s) 581, 863
BstMBI GATC 2 cut(s) 132, 289
BstMCI CGRYCG 2 cut(s) 75, 84
BstMWI GCNNNNNNNGC 4 cut(s) 96, 376, 507, 590
BstSCI CCNGG 2 cut(s) 78, 231
BstSFI CTRYAG 1 cut(s) 591
BstSLI GKGCMC 1 cut(s) 801
BstUI CGCG 1 cut(s) 53
BstV1I GCAGC 2 cut(s) 743, 929
BstXI CCANNNNNNTGG 1 cut(s) 446
BstZI CGGCCG 1 cut(s) 72
BsuRI GGCC 3 cut(s) 74, 728, 937
BtgI CCRYGG 2 cut(s) 91, 932
BtsCI GGATG 5 cut(s) 135, 418, 544, 780, 823
BtsI GCAGTG 2 cut(s) 600, 908
BtsIMutI CAGTG 3 cut(s) 292, 600, 908
Cac8I GCNNGC 3 cut(s) 72, 797, 915
CciI TCATGA 2 cut(s) 313, 840
CfoI GCGC 1 cut(s) 53
Cfr10I RCCGGY 2 cut(s) 70, 913
Cfr13I GGNCC 3 cut(s) 40, 273, 294
CpoI CGGWCCG 1 cut(s) 294
CseI GACGC 2 cut(s) 128, 845
Csp6I GTAC 1 cut(s) 899
CspI CGGWCCG 1 cut(s) 294
CviAII CATG 4 cut(s) 92, 314, 841, 933
CviQI GTAC 1 cut(s) 899
DdeI CTNAG 2 cut(s) 183, 585
DpnI GATC 2 cut(s) 134, 291
DpnII GATC 2 cut(s) 132, 289
DrdI GACNNNNNNGTC 1 cut(s) 38
DseDI GACNNNNNNGTC 1 cut(s) 38
EaeI YGGCCR 2 cut(s) 72, 726
EagI CGGCCG 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
EciI GGCGGA 3 cut(s) 271, 434, 516
EclXI CGGCCG 1 cut(s) 72
Eco130I CCWWGG 2 cut(s) 91, 932
Eco24I GRGCYC 1 cut(s) 707
Eco47I GGWCC 3 cut(s) 40, 273, 294
Eco52I CGGCCG 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 787
Eco88I CYCGRG 1 cut(s) 217
EcoO109I RGGNCCY 1 cut(s) 40
EcoT14I CCWWGG 2 cut(s) 91, 932
EcoT38I GRGCYC 1 cut(s) 707
ErhI CCWWGG 2 cut(s) 91, 932
Esp3I CGTCTC 1 cut(s) 863
FaeI CATG 4 cut(s) 95, 317, 844, 936
FaiI YATR 9 cut(s) 93, 174, 180, 252, 315, 771, 815, 842, 934
FalI AAGNNNNNCTT 2 cut(s) 635, 667
FatI CATG 4 cut(s) 91, 313, 840, 932
FauI CCCGC 1 cut(s) 879
FbaI TGATCA 1 cut(s) 132
Fnu4HI GCNGC 4 cut(s) 75, 729, 732, 918
FokI GGATG 5 cut(s) 142, 425, 551, 787, 830
FriOI GRGCYC 1 cut(s) 707
Fsp4HI GCNGC 4 cut(s) 75, 729, 732, 918
GlaI GCGC 1 cut(s) 52
GluI GCNGC 4 cut(s) 75, 729, 732, 918
GsuI CTGGAG 1 cut(s) 942
HaeIII GGCC 3 cut(s) 74, 728, 937
HapII CCGG 7 cut(s) 71, 80, 233, 304, 348, 498, 914
HgaI GACGC 2 cut(s) 128, 845
HhaI GCGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 4 cut(s) 95, 317, 844, 936
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HindIII AAGCTT 3 cut(s) 97, 460, 508
HpaII CCGG 7 cut(s) 71, 80, 233, 304, 348, 498, 914
HphI GGTGA 5 cut(s) 253, 337, 638, 647, 712
Hpy166II GTNNAC 1 cut(s) 799
Hpy188I TCNGA 8 cut(s) 142, 211, 277, 298, 376, 412, 493, 806
Hpy188III TCNNGA 3 cut(s) 314, 679, 841
Hpy8I GTNNAC 1 cut(s) 799
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 6 cut(s) 58, 416, 655, 753, 820, 915
HpyCH4III ACNGT 1 cut(s) 613
HpyCH4V TGCA 3 cut(s) 28, 593, 799
HpyF10VI GCNNNNNNNGC 4 cut(s) 96, 376, 507, 590
HpyF3I CTNAG 2 cut(s) 183, 585
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 4 cut(s) 95, 317, 844, 936
HspAI GCGC 1 cut(s) 51
KroI GCCGGC 2 cut(s) 70, 913
KroNI GCCGGC 2 cut(s) 72, 915
Ksp22I TGATCA 1 cut(s) 132
Kzo9I GATC 2 cut(s) 132, 289
LmnI GCTCC 2 cut(s) 67, 376
Lsp1109I GCAGC 2 cut(s) 743, 929
MaeIII GTNAC 2 cut(s) 241, 548
MalI GATC 2 cut(s) 134, 291
MboI GATC 2 cut(s) 132, 289
MboII GAAGA 4 cut(s) 203, 587, 611, 652
MhlI GDGCHC 2 cut(s) 707, 801
MluCI AATT 5 cut(s) 15, 401, 444, 524, 836
MlyI GAGTC 4 cut(s) 215, 545, 853, 933
MmeI TCCRAC 3 cut(s) 135, 390, 436
MroNI GCCGGC 2 cut(s) 70, 913
MspA1I CMGCKG 1 cut(s) 920
MspI CCGG 7 cut(s) 71, 80, 233, 304, 348, 498, 914
MspR9I CCNGG 2 cut(s) 80, 233
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 4 cut(s) 96, 376, 507, 590
NaeI GCCGGC 2 cut(s) 72, 915
NciI CCSGG 2 cut(s) 80, 233
NcoI CCATGG 2 cut(s) 91, 932
NdeII GATC 2 cut(s) 132, 289
NgoMIV GCCGGC 2 cut(s) 70, 913
NlaIII CATG 4 cut(s) 95, 317, 844, 936
NlaIV GGNNCC 4 cut(s) 69, 378, 666, 891
NmeAIII GCCGAG 1 cut(s) 148
NmuCI GTSAC 2 cut(s) 241, 548
PagI TCATGA 2 cut(s) 313, 840
PcsI WCGNNNNNNNCGW 1 cut(s) 853
PdiI GCCGGC 2 cut(s) 72, 915
PfeI GAWTC 7 cut(s) 160, 257, 278, 473, 494, 563, 578
PkrI GCNGC 4 cut(s) 76, 730, 733, 919
PleI GAGTC 4 cut(s) 214, 545, 852, 932
PpsI GAGTC 4 cut(s) 214, 545, 852, 932
PpuMI RGGWCCY 1 cut(s) 40
Psp5II RGGWCCY 1 cut(s) 40
PspN4I GGNNCC 4 cut(s) 69, 378, 666, 891
PspPI GGNCC 3 cut(s) 40, 273, 294
PspPPI RGGWCCY 1 cut(s) 40
PstI CTGCAG 1 cut(s) 595
PvuII CAGCTG 1 cut(s) 920
RsaI GTAC 1 cut(s) 900
RsaNI GTAC 1 cut(s) 899
Rsr2I CGGWCCG 1 cut(s) 294
RsrII CGGWCCG 1 cut(s) 294
SatI GCNGC 4 cut(s) 75, 729, 732, 918
Sau3AI GATC 2 cut(s) 132, 289
Sau96I GGNCC 3 cut(s) 40, 273, 294
SchI GAGTC 4 cut(s) 215, 545, 853, 933
ScrFI CCNGG 2 cut(s) 80, 233
SduI GDGCHC 2 cut(s) 707, 801
SfcI CTRYAG 1 cut(s) 591
SinI GGWCC 3 cut(s) 40, 273, 294
Sse9I AATT 5 cut(s) 15, 401, 444, 524, 836
SsiI CCGC 7 cut(s) 53, 75, 282, 419, 501, 729, 886
StyD4I CCNGG 2 cut(s) 78, 231
StyI CCWWGG 2 cut(s) 91, 932
TaaI ACNGT 1 cut(s) 613
TaqI TCGA 3 cut(s) 84, 107, 554
TaqII GACCGA 1 cut(s) 282
TasI AATT 5 cut(s) 15, 401, 444, 524, 836
TauI GCSGC 2 cut(s) 77, 731
TfiI GAWTC 7 cut(s) 160, 257, 278, 473, 494, 563, 578
TscAI CASTG 3 cut(s) 292, 600, 915
TseFI GTSAC 2 cut(s) 241, 548
TseI GCWGC 2 cut(s) 731, 917
Tsp45I GTSAC 2 cut(s) 241, 548
TspDTI ATGAA 4 cut(s) 588, 791, 829, 879
TspRI CASTG 3 cut(s) 292, 600, 915
VneI GTGCAC 1 cut(s) 797
VpaK11BI GGWCC 3 cut(s) 40, 273, 294
XapI RAATTY 2 cut(s) 401, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.