RchiOBHm_Chr6g0251151

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0008074
Physical Location & Seq
Reverse (-)
6465452 .. 6468925
3474 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22516

Sequence Viewer

Length: 951 bp
ATGGAAGGAGGAGAAACTGGGGAGTTGCAGGACTGGGAGGTCCTCCACAGCACGGAGGAGGAGCCGGCTGCCCCGGTCGAAAGCCATGGAAGCTTCTCGTCGATTGAGGCTGACGCCGAGGGGATGATCAGGTCTGATTATTTCTCGTTGGAGAATCAGGGGAGGTATGCCTATGCTAAGAGTGAAGAGGGTTCGGTTGAGTCCGATAACCCGAGCTGGATTGACCCGGTTCAGGTGACTACGTATAAGGAATCGGGTGGGTTCTGGTCCGATTCCGCCAGTGATCGGTCCGATGACCGGAAAAGTCATGATTTTGAGGTGAGAGGCGAGTTGGGTTTCGCCGGAAATGAGCAAAGTCGTGTGCTTTCGGAGCCTGTGGAGGAGCGTTTGGGGAAATTCGGGTCGGATGAGGCGGAAGGGAAAGTGAGTTTCCAAGAAATTGGGGAAGTTGGAAGCGCTGATAAGGATTCGGACAAGTTCTGGTCTGATTCTGGCGGAGAAAGATTGGTTTCTGTGAAATTTGACGAGGAGGGTGGTTCAAGTGACTCGAACAAGGAATCAGCAGATGAAGAATCGGCTGAGACTGCAGTGGAAGAAGTGAAAGCGGTGGCGAAATCGGGTGATGAGGGTGAGAAGAAGGTGGTCTTGTGGTGGAAGGTTCCATTGGAGGTCTTGAAATATTGTGTTTTTAAGGTGAGCCCTGTTTGGTCTTTCTCTGTGGCCGCAGCAATAATGGGTTTAGTTATCTTGGGAAGGAGATTGTATAGGATGAAGCGAAAGAGCCATAGCGTGCACTTCAGAGTTGCTAAGGATGATAAGAAGGTATCTCAATTCATGAGTCGTGCTGTGCGTCTCAATGAAGCATTTTCAGTTGTGAGGCGGGTTCCTATTGTACGACCTTCACTGCCGGCTGCTGGGGTCAATCCATGGCCTGTGATGAGTTTGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

316

Amino Acids

34.98

Weight (kDa)

4.83

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6821 PF20705 185 - 301 2.3e-15 Family of unknown function (DUF6821)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 38
AciI CCGC 6 cut(s) 276, 413, 495, 605, 723, 880
AcoI YGGCCR 1 cut(s) 720
AcsI RAATTY 2 cut(s) 395, 518
AcuI CTGAAG 1 cut(s) 781
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 1 cut(s) 894
AfeI AGCGCT 1 cut(s) 457
AfiI CCNNNNNNNGG 5 cut(s) 52, 232, 285, 297, 914
AgsI TTSAA 2 cut(s) 540, 676
AjuI GAANNNNNNNTTGG 2 cut(s) 647, 679
AluBI AGCT 2 cut(s) 93, 216
AluI AGCT 2 cut(s) 93, 216
Alw21I GWGCWC 1 cut(s) 795
Alw26I GTCTC 2 cut(s) 575, 857
Alw44I GTGCAC 1 cut(s) 791
Ama87I CYCGRG 1 cut(s) 211
Aor51HI AGCGCT 1 cut(s) 457
AoxI GGCC 2 cut(s) 720, 929
ApaLI GTGCAC 1 cut(s) 791
ApeKI GCWGC 3 cut(s) 68, 725, 911
ApoI RAATTY 2 cut(s) 395, 518
AspLEI GCGC 1 cut(s) 458
AspS9I GGNCC 3 cut(s) 40, 267, 288
AsuC2I CCSGG 2 cut(s) 74, 227
AsuHPI GGTGA 5 cut(s) 247, 331, 632, 641, 706
AvaI CYCGRG 1 cut(s) 211
AvaII GGWCC 3 cut(s) 40, 267, 288
BaeGI GKGCMC 1 cut(s) 795
BanII GRGCYC 1 cut(s) 701
Bbv12I GWGCWC 1 cut(s) 795
BbvI GCAGC 3 cut(s) 55, 737, 898
BclI TGATCA 1 cut(s) 126
BcnI CCSGG 2 cut(s) 74, 227
BcoDI GTCTC 2 cut(s) 575, 857
BfmI CTRYAG 1 cut(s) 585
BfoI RGCGCY 1 cut(s) 459
BisI GCNGC 4 cut(s) 69, 723, 726, 912
BlsI GCNGC 4 cut(s) 70, 724, 727, 913
Bme1390I CCNGG 2 cut(s) 74, 227
Bme18I GGWCC 3 cut(s) 40, 267, 288
BmeT110I CYCGRG 1 cut(s) 211
BmgT120I GGNCC 3 cut(s) 40, 267, 288
BmiI GGNNCC 4 cut(s) 63, 372, 660, 885
BmrFI CCNGG 2 cut(s) 74, 227
BmrI ACTGGG 2 cut(s) 27, 43
BmuI ACTGGG 2 cut(s) 27, 43
Bpu10I CCTNAGC 1 cut(s) 807
BpuMI CCSGG 2 cut(s) 74, 227
BsaAI YACGTR 1 cut(s) 243
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 4 cut(s) 72, 85, 117, 926
BsaWI WCCGGW 1 cut(s) 297
Bsc4I CCNNNNNNNGG 5 cut(s) 52, 232, 285, 297, 914
Bse118I RCCGGY 2 cut(s) 64, 907
Bse1I ACTGG 3 cut(s) 22, 38, 279
BseDI CCNNGG 4 cut(s) 72, 85, 117, 926
BseGI GGATG 4 cut(s) 129, 412, 774, 817
BseLI CCNNNNNNNGG 5 cut(s) 52, 232, 285, 297, 914
BseMII CTCAG 1 cut(s) 570
BseNI ACTGG 3 cut(s) 22, 38, 279
BseRI GAGGAG 5 cut(s) 24, 71, 74, 395, 542
BseSI GKGCMC 1 cut(s) 795
BseXI GCAGC 3 cut(s) 55, 737, 898
BseYI CCCAGC 1 cut(s) 914
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 2 cut(s) 722, 931
BsiEI CGRYCG 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 795
BsiHKCI CYCGRG 1 cut(s) 211
BsiSI CCGG 6 cut(s) 65, 74, 227, 298, 342, 908
BslI CCNNNNNNNGG 5 cut(s) 52, 232, 285, 297, 914
BsmAI GTCTC 2 cut(s) 575, 857
BsmBI CGTCTC 1 cut(s) 857
BsnI GGCC 2 cut(s) 722, 931
BsoBI CYCGRG 1 cut(s) 211
Bsp1286I GDGCHC 2 cut(s) 701, 795
Bsp143I GATC 2 cut(s) 126, 283
Bsp19I CCATGG 2 cut(s) 85, 926
BspACI CCGC 6 cut(s) 276, 413, 495, 605, 723, 880
BspANI GGCC 2 cut(s) 722, 931
BspCNI CTCAG 1 cut(s) 571
BspHI TCATGA 2 cut(s) 307, 834
BspLI GGNNCC 4 cut(s) 63, 372, 660, 885
BspMAI CTGCAG 1 cut(s) 589
BsrFI RCCGGY 2 cut(s) 64, 907
BsrI ACTGG 3 cut(s) 22, 38, 279
BssAI RCCGGY 2 cut(s) 64, 907
BssECI CCNNGG 4 cut(s) 72, 85, 117, 926
BssMI GATC 2 cut(s) 126, 283
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 2 cut(s) 85, 926
Bst6I CTCTTC 1 cut(s) 180
BstACI GRCGYC 1 cut(s) 114
BstBAI YACGTR 1 cut(s) 243
BstC8I GCNNGC 3 cut(s) 66, 791, 909
BstDEI CTNAG 3 cut(s) 177, 579, 807
BstDSI CCRYGG 2 cut(s) 85, 926
BstF5I GGATG 4 cut(s) 129, 412, 774, 817
BstH2I RGCGCY 1 cut(s) 459
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 2 cut(s) 129, 286
BstMAI GTCTC 2 cut(s) 575, 857
BstMBI GATC 2 cut(s) 126, 283
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 3 cut(s) 90, 370, 584
BstSCI CCNGG 2 cut(s) 72, 225
BstSFI CTRYAG 1 cut(s) 585
BstSLI GKGCMC 1 cut(s) 795
BstSNI TACGTA 1 cut(s) 243
BstV1I GCAGC 3 cut(s) 55, 737, 898
BstXI CCANNNNNNTGG 1 cut(s) 440
BsuRI GGCC 2 cut(s) 722, 931
BtgI CCRYGG 2 cut(s) 85, 926
BtsCI GGATG 4 cut(s) 129, 412, 774, 817
BtsI GCAGTG 2 cut(s) 594, 902
BtsIMutI CAGTG 3 cut(s) 286, 594, 902
Cac8I GCNNGC 3 cut(s) 66, 791, 909
CciI TCATGA 2 cut(s) 307, 834
CfoI GCGC 1 cut(s) 458
Cfr10I RCCGGY 2 cut(s) 64, 907
Cfr13I GGNCC 3 cut(s) 40, 267, 288
CpoI CGGWCCG 1 cut(s) 288
CseI GACGC 2 cut(s) 122, 839
Csp6I GTAC 1 cut(s) 893
CspI CGGWCCG 1 cut(s) 288
CviAII CATG 4 cut(s) 86, 308, 835, 927
CviQI GTAC 1 cut(s) 893
DdeI CTNAG 3 cut(s) 177, 579, 807
DpnI GATC 2 cut(s) 128, 285
DpnII GATC 2 cut(s) 126, 283
DrdI GACNNNNNNGTC 1 cut(s) 38
DseDI GACNNNNNNGTC 1 cut(s) 38
EaeI YGGCCR 1 cut(s) 720
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
EciI GGCGGA 3 cut(s) 265, 428, 510
Eco105I TACGTA 1 cut(s) 243
Eco130I CCWWGG 2 cut(s) 85, 926
Eco24I GRGCYC 1 cut(s) 701
Eco47I GGWCC 3 cut(s) 40, 267, 288
Eco47III AGCGCT 1 cut(s) 457
Eco57I CTGAAG 1 cut(s) 781
Eco88I CYCGRG 1 cut(s) 211
EcoO109I RGGNCCY 1 cut(s) 40
EcoT14I CCWWGG 2 cut(s) 85, 926
EcoT38I GRGCYC 1 cut(s) 701
ErhI CCWWGG 2 cut(s) 85, 926
Esp3I CGTCTC 1 cut(s) 857
FaeI CATG 4 cut(s) 89, 311, 838, 930
FaiI YATR 9 cut(s) 87, 168, 174, 246, 309, 765, 786, 836, 928
FalI AAGNNNNNCTT 2 cut(s) 629, 661
FatI CATG 4 cut(s) 85, 307, 834, 926
FauI CCCGC 1 cut(s) 873
FbaI TGATCA 1 cut(s) 126
Fnu4HI GCNGC 4 cut(s) 69, 723, 726, 912
FokI GGATG 4 cut(s) 136, 419, 781, 824
FriOI GRGCYC 1 cut(s) 701
Fsp4HI GCNGC 4 cut(s) 69, 723, 726, 912
GlaI GCGC 1 cut(s) 457
GluI GCNGC 4 cut(s) 69, 723, 726, 912
GsaI CCCAGC 1 cut(s) 918
HaeII RGCGCY 1 cut(s) 459
HaeIII GGCC 2 cut(s) 722, 931
HapII CCGG 6 cut(s) 65, 74, 227, 298, 342, 908
HgaI GACGC 2 cut(s) 122, 839
HhaI GCGC 1 cut(s) 458
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 4 cut(s) 89, 311, 838, 930
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HindIII AAGCTT 1 cut(s) 91
HpaII CCGG 6 cut(s) 65, 74, 227, 298, 342, 908
HphI GGTGA 5 cut(s) 247, 331, 632, 641, 706
Hpy166II GTNNAC 1 cut(s) 793
Hpy188I TCNGA 9 cut(s) 136, 205, 271, 292, 370, 406, 472, 487, 800
Hpy188III TCNNGA 3 cut(s) 308, 673, 835
Hpy8I GTNNAC 1 cut(s) 793
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 6 cut(s) 410, 631, 649, 747, 814, 909
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 3 cut(s) 28, 587, 793
HpyF10VI GCNNNNNNNGC 3 cut(s) 90, 370, 584
HpyF3I CTNAG 3 cut(s) 177, 579, 807
HpySE526I ACGT 1 cut(s) 242
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 4 cut(s) 89, 311, 838, 930
HspAI GCGC 1 cut(s) 456
KroI GCCGGC 2 cut(s) 64, 907
KroNI GCCGGC 2 cut(s) 66, 909
Ksp22I TGATCA 1 cut(s) 126
Kzo9I GATC 2 cut(s) 126, 283
LmnI GCTCC 3 cut(s) 61, 370, 382
Lsp1109I GCAGC 3 cut(s) 55, 737, 898
MaeII ACGT 1 cut(s) 242
MaeIII GTNAC 2 cut(s) 235, 542
MalI GATC 2 cut(s) 128, 285
MboI GATC 2 cut(s) 126, 283
MboII GAAGA 4 cut(s) 197, 581, 605, 646
MhlI GDGCHC 2 cut(s) 701, 795
MluCI AATT 4 cut(s) 395, 438, 518, 830
MlyI GAGTC 3 cut(s) 209, 539, 847
MmeI TCCRAC 3 cut(s) 129, 384, 430
MroNI GCCGGC 2 cut(s) 64, 907
MseI TTAA 1 cut(s) 690
MspI CCGG 6 cut(s) 65, 74, 227, 298, 342, 908
MspR9I CCNGG 2 cut(s) 74, 227
MwoI GCNNNNNNNGC 3 cut(s) 90, 370, 584
NaeI GCCGGC 2 cut(s) 66, 909
NciI CCSGG 2 cut(s) 74, 227
NcoI CCATGG 2 cut(s) 85, 926
NdeII GATC 2 cut(s) 126, 283
NgoMIV GCCGGC 2 cut(s) 64, 907
NlaIII CATG 4 cut(s) 89, 311, 838, 930
NlaIV GGNNCC 4 cut(s) 63, 372, 660, 885
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 2 cut(s) 235, 542
PagI TCATGA 2 cut(s) 307, 834
PcsI WCGNNNNNNNCGW 1 cut(s) 847
PdiI GCCGGC 2 cut(s) 66, 909
PfeI GAWTC 7 cut(s) 154, 251, 272, 467, 488, 557, 572
PkrI GCNGC 4 cut(s) 70, 724, 727, 913
PleI GAGTC 3 cut(s) 208, 539, 846
PpsI GAGTC 3 cut(s) 208, 539, 846
Ppu21I YACGTR 1 cut(s) 243
PpuMI RGGWCCY 1 cut(s) 40
Psp5II RGGWCCY 1 cut(s) 40
PspFI CCCAGC 1 cut(s) 914
PspN4I GGNNCC 4 cut(s) 63, 372, 660, 885
PspPI GGNCC 3 cut(s) 40, 267, 288
PspPPI RGGWCCY 1 cut(s) 40
PstI CTGCAG 1 cut(s) 589
RsaI GTAC 1 cut(s) 894
RsaNI GTAC 1 cut(s) 893
Rsr2I CGGWCCG 1 cut(s) 288
RsrII CGGWCCG 1 cut(s) 288
SaqAI TTAA 1 cut(s) 690
SatI GCNGC 4 cut(s) 69, 723, 726, 912
Sau3AI GATC 2 cut(s) 126, 283
Sau96I GGNCC 3 cut(s) 40, 267, 288
SchI GAGTC 3 cut(s) 209, 539, 847
ScrFI CCNGG 2 cut(s) 74, 227
SduI GDGCHC 2 cut(s) 701, 795
SfcI CTRYAG 1 cut(s) 585
SinI GGWCC 3 cut(s) 40, 267, 288
SnaBI TACGTA 1 cut(s) 243
Sse9I AATT 4 cut(s) 395, 438, 518, 830
SsiI CCGC 6 cut(s) 276, 413, 495, 605, 723, 880
SspI AATATT 1 cut(s) 680
StyD4I CCNGG 2 cut(s) 72, 225
StyI CCWWGG 2 cut(s) 85, 926
TaiI ACGT 1 cut(s) 245
TaqI TCGA 3 cut(s) 78, 101, 548
TaqII GACCGA 1 cut(s) 276
TasI AATT 4 cut(s) 395, 438, 518, 830
TauI GCSGC 1 cut(s) 725
TfiI GAWTC 7 cut(s) 154, 251, 272, 467, 488, 557, 572
Tru1I TTAA 1 cut(s) 690
Tru9I TTAA 1 cut(s) 690
TscAI CASTG 3 cut(s) 286, 594, 909
TseFI GTSAC 2 cut(s) 235, 542
TseI GCWGC 3 cut(s) 68, 725, 911
Tsp45I GTSAC 2 cut(s) 235, 542
TspDTI ATGAA 4 cut(s) 582, 785, 823, 873
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 3 cut(s) 286, 594, 909
VneI GTGCAC 1 cut(s) 791
VpaK11BI GGWCC 3 cut(s) 40, 267, 288
XapI RAATTY 2 cut(s) 395, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.