Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0008074

Physical Location & Seq

Genomic Coordinates Reverse (-)

525161 .. 529475

Gene Structure 4315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G006800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGAAGGGGGAGATATCGGTGACTGGGAGATGCTCCACAACTCCGACCCTCCCCTGGTCAACTCAGATGACTCGGTTGAAAGCCCTAGTAACTTCGAAGGAATTGATGTTGACGCCGAGGGTATGATCAGGCCTGATTACTTCTCTTTGGATAATCAGGGCAAGTATGGGTATGCTAAGGATGTGGCTGATGTCAGCGAAGAGGGTTCGGTTGAGTCCGACAACCCGAGCTGGATTGACCCAGGTTCGGTGACTCGCTATGGGGCAAAAGAACCGGGTGGGTTCTGGTCCGATTCGGGCAGTGATCGGTCCGACGACCGTAAAAGTAATGATCTTGAGGTGAAAAACGAATTGGGTTTTGCGGGTAATGACAAAAGCCAAGTTGGTTTTGGAGGGATTGTAGAAATGGAGTATACCGATGAGAATTTGGGAAAATTCGGGTCTGAAAAGGGCAAACTTAGTGGGTTGGATGTGGAAGGCCAACTGAGCTTTGAAGAAATTGGGGAAAACACAAGGGTTGAGAAGGAAAGTGAGATGGGTTTTAGTGGATTGGATGGTGGAAATGACATGGATAAGAAACCAGAAGATGGACAATCAGTTGGGAGTCTAAGTGCCGCACCTGAAGTGAAACCTGAGGCAAAATCGGGTGCCGAGGTGGTGAAGAGGACAATCTTGTGGTGGAAGGTTCCATTTGAGGTCTTGAAGTATTGTGTTTTTAGGGTAAGCCCTGTTTGGTCATTTTCTGTGGCCGCAGCAGTGATGGGGTTAGTTTTCTTGGGGCGGCGATTGTATAAGATGAAGAGAAAGAGCCAGACCTTGCAGCTCAAGGTTACTCTGGATGATAAGAAGGTGTCTCAGTTCATGAGTCGCGCTGTGCGTCTCAATGAAGCATTTTCAGTGGTGAGGCGGGTTCCTATAATACGGCCTTCACTTCCAGCATCTGGGGTAAATCCGTGGCCTGTAATGGGCCTGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

326

Amino Acids

35.67

Weight (kDa)

4.7

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13530 AT4G13530
fragaria_vesca	FvH4_2g00770 FvH4_2g00770
malus_domestica	MD05G1003400.v1.1 MD10G1004400.v1.1
prunus_persica	Prupe.8G006800_v2.0.a1 Prupe.8G006800_v2.0.a1
pyrus_communis	pycom05g00310 pycom10g00350
rosa_chinensis	RchiOBHm_Chr6g0251151
rosa_laevigata	RLG00000015479
rosa_multiflora	Rmu_sc0001307.1_g000016 Rmu_sc0002219.1_g000020 Rmu_sc0014052.1_g000003
rosa_roxburghii	Rroxscaffold_1G00032260 Rroxscaffold_7G00216990
rosa_rugosa	Rorug05G0500600
rosa_samantha	Rh5CG360700 Rh6AG009700 Rh6BG002200 Rh6CG006400 Rh6DG006800
rosa_wichuraiana	Rw6G000970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	647
AccB7I	CCANNNNNTGG	2 cut(s)	587, 941
AccI	GTMKAC	1 cut(s)	413
AccII	CGCG	1 cut(s)	870
AciI	CCGC	5 cut(s)	362, 615, 750, 781, 907
AcoI	YGGCCR	1 cut(s)	747
AcsI	RAATTY	2 cut(s)	424, 434
AcuI	CTGAAG	1 cut(s)	642
AcyI	GRCGYC	1 cut(s)	114
AfiI	CCNNNNNNNGG	5 cut(s)	55, 247, 587, 941, 965
AgsI	TTSAA	3 cut(s)	80, 494, 703
AjnI	CCWGG	2 cut(s)	54, 241
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AluBI	AGCT	3 cut(s)	231, 489, 823
AluI	AGCT	3 cut(s)	231, 489, 823
Alw26I	GTCTC	2 cut(s)	858, 884
AlwNI	CAGNNNCTG	1 cut(s)	941
Ama87I	CYCGRG	1 cut(s)	226
AoxI	GGCC	6 cut(s)	131, 478, 747, 923, 956, 967
ApeKI	GCWGC	2 cut(s)	752, 820
ApoI	RAATTY	2 cut(s)	424, 434
AspLEI	GCGC	1 cut(s)	872
AspS9I	GGNCC	3 cut(s)	288, 309, 967
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	5 cut(s)	32, 262, 352, 670, 913
AsuII	TTCGAA	1 cut(s)	96
AvaI	CYCGRG	1 cut(s)	226
AvaII	GGWCC	2 cut(s)	288, 309
AxyI	CCTNAGG	1 cut(s)	633
BanI	GGYRCC	1 cut(s)	647
BbvI	GCAGC	2 cut(s)	764, 832
BccI	CCATC	4 cut(s)	529, 548, 581, 754
BceAI	ACGGC	1 cut(s)	938
BciT130I	CCWGG	2 cut(s)	56, 243
BclI	TGATCA	1 cut(s)	126
BcnI	CCSGG	1 cut(s)	276
BcoDI	GTCTC	2 cut(s)	858, 884
BfaI	CTAG	1 cut(s)	87
BisI	GCNGC	5 cut(s)	615, 750, 753, 782, 821
BlsI	GCNGC	5 cut(s)	616, 751, 754, 783, 822
Bme1390I	CCNGG	3 cut(s)	56, 243, 276
Bme18I	GGWCC	2 cut(s)	288, 309
BmeT110I	CYCGRG	1 cut(s)	226
BmgT120I	GGNCC	3 cut(s)	288, 309, 967
BmiI	GGNNCC	3 cut(s)	649, 687, 912
BmrFI	CCNGG	3 cut(s)	56, 243, 276
BmrI	ACTGGG	1 cut(s)	34
BmsI	GCATC	2 cut(s)	21, 947
BmuI	ACTGGG	1 cut(s)	34
Bpu10I	CCTNAGC	1 cut(s)	177
Bpu14I	TTCGAA	1 cut(s)	96
BpuEI	CTTGAG	2 cut(s)	356, 809
BpuMI	CCSGG	1 cut(s)	276
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	5 cut(s)	54, 117, 241, 651, 953
BsaXI	ACNNNNNCTCC	4 cut(s)	384, 414, 595, 625
Bsc4I	CCNNNNNNNGG	5 cut(s)	55, 247, 587, 941, 965
Bse1I	ACTGG	1 cut(s)	29
Bse21I	CCTNAGG	1 cut(s)	633
BseBI	CCWGG	2 cut(s)	56, 243
BseDI	CCNNGG	5 cut(s)	54, 117, 241, 651, 953
BseGI	GGATG	4 cut(s)	187, 475, 559, 844
BseLI	CCNNNNNNNGG	5 cut(s)	55, 247, 587, 941, 965
BseMII	CTCAG	5 cut(s)	78, 476, 624, 869, 962
BseNI	ACTGG	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	764, 832
Bsh1236I	CGCG	1 cut(s)	870
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	6 cut(s)	133, 480, 749, 925, 958, 969
BshNI	GGYRCC	1 cut(s)	647
BsiEI	CGRYCG	1 cut(s)	319
BsiHKCI	CYCGRG	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	275
BslI	CCNNNNNNNGG	5 cut(s)	55, 247, 587, 941, 965
BsmAI	GTCTC	2 cut(s)	858, 884
BsmBI	CGTCTC	1 cut(s)	884
BsnI	GGCC	6 cut(s)	133, 480, 749, 925, 958, 969
BsoBI	CYCGRG	1 cut(s)	226
Bsp119I	TTCGAA	1 cut(s)	96
Bsp143I	GATC	3 cut(s)	126, 304, 331
BspACI	CCGC	5 cut(s)	362, 615, 750, 781, 907
BspANI	GGCC	6 cut(s)	133, 480, 749, 925, 958, 969
BspCNI	CTCAG	5 cut(s)	77, 477, 625, 868, 963
BspFNI	CGCG	1 cut(s)	870
BspHI	TCATGA	1 cut(s)	861
BspLI	GGNNCC	3 cut(s)	649, 687, 912
BspT104I	TTCGAA	1 cut(s)	96
BspT107I	GGYRCC	1 cut(s)	647
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	5 cut(s)	54, 117, 241, 651, 953
BssMI	GATC	3 cut(s)	126, 304, 331
BssNAI	GTATAC	1 cut(s)	414
BssNI	GRCGYC	1 cut(s)	114
Bst1107I	GTATAC	1 cut(s)	414
Bst2UI	CCWGG	2 cut(s)	56, 243
Bst4CI	ACNGT	1 cut(s)	320
Bst6I	CTCTTC	3 cut(s)	195, 656, 794
BstACI	GRCGYC	1 cut(s)	114
BstBI	TTCGAA	1 cut(s)	96
BstDEI	CTNAG	8 cut(s)	64, 177, 458, 485, 608, 633, 855, 971
BstDSI	CCRYGG	1 cut(s)	953
BstF5I	GGATG	4 cut(s)	187, 475, 559, 844
BstFNI	CGCG	1 cut(s)	870
BstHHI	GCGC	1 cut(s)	872
BstKTI	GATC	3 cut(s)	129, 307, 334
BstMAI	GTCTC	2 cut(s)	858, 884
BstMBI	GATC	3 cut(s)	126, 304, 331
BstMCI	CGRYCG	1 cut(s)	319
BstMWI	GCNNNNNNNGC	1 cut(s)	486
BstNI	CCWGG	2 cut(s)	56, 243
BstSCI	CCNGG	3 cut(s)	54, 241, 274
BstUI	CGCG	1 cut(s)	870
BstV1I	GCAGC	2 cut(s)	764, 832
BstZ17I	GTATAC	1 cut(s)	414
Bsu36I	CCTNAGG	1 cut(s)	633
BsuRI	GGCC	6 cut(s)	133, 480, 749, 925, 958, 969
BtgI	CCRYGG	1 cut(s)	953
BtsCI	GGATG	4 cut(s)	187, 475, 559, 844
BtsI	GCAGTG	2 cut(s)	307, 762
BtsIMutI	CAGTG	3 cut(s)	307, 762, 903
CaiI	CAGNNNCTG	1 cut(s)	941
CciI	TCATGA	1 cut(s)	861
CfoI	GCGC	1 cut(s)	872
Cfr13I	GGNCC	3 cut(s)	288, 309, 967
CpoI	CGGWCCG	1 cut(s)	309
CseI	GACGC	2 cut(s)	122, 866
CspCI	CAANNNNNGTGG	2 cut(s)	442, 477
CspI	CGGWCCG	1 cut(s)	309
CviAII	CATG	2 cut(s)	568, 862
DdeI	CTNAG	8 cut(s)	64, 177, 458, 485, 608, 633, 855, 971
DpnI	GATC	3 cut(s)	128, 306, 333
DpnII	GATC	3 cut(s)	126, 304, 331
EaeI	YGGCCR	1 cut(s)	747
Eam1104I	CTCTTC	3 cut(s)	195, 656, 794
EarI	CTCTTC	3 cut(s)	195, 656, 794
Eco147I	AGGCCT	1 cut(s)	133
Eco32I	GATATC	1 cut(s)	16
Eco47I	GGWCC	2 cut(s)	288, 309
Eco57I	CTGAAG	1 cut(s)	642
Eco81I	CCTNAGG	1 cut(s)	633
Eco88I	CYCGRG	1 cut(s)	226
EcoRII	CCWGG	2 cut(s)	54, 241
EcoRV	GATATC	1 cut(s)	16
Esp3I	CGTCTC	1 cut(s)	884
FaeI	CATG	2 cut(s)	571, 865
FaiI	YATR	9 cut(s)	125, 168, 174, 261, 414, 569, 792, 863, 917
FatI	CATG	2 cut(s)	567, 861
FauI	CCCGC	2 cut(s)	355, 900
FbaI	TGATCA	1 cut(s)	126
FblI	GTMKAC	1 cut(s)	413
Fnu4HI	GCNGC	5 cut(s)	615, 750, 753, 782, 821
FokI	GGATG	4 cut(s)	194, 482, 566, 851
Fsp4HI	GCNGC	5 cut(s)	615, 750, 753, 782, 821
FspBI	CTAG	1 cut(s)	87
GlaI	GCGC	1 cut(s)	871
GluI	GCNGC	5 cut(s)	615, 750, 753, 782, 821
HaeIII	GGCC	6 cut(s)	133, 480, 749, 925, 958, 969
HapII	CCGG	1 cut(s)	275
HgaI	GACGC	2 cut(s)	122, 866
HhaI	GCGC	1 cut(s)	872
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	2 cut(s)	571, 865
Hin6I	GCGC	1 cut(s)	870
HinP1I	GCGC	1 cut(s)	870
HincII	GTYRAC	2 cut(s)	61, 112
HindII	GTYRAC	2 cut(s)	61, 112
HinfI	GANTC	6 cut(s)	71, 215, 253, 293, 604, 865
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	5 cut(s)	32, 262, 352, 670, 913
Hpy166II	GTNNAC	3 cut(s)	61, 112, 414
Hpy188I	TCNGA	6 cut(s)	46, 67, 220, 292, 313, 445
Hpy188III	TCNNGA	4 cut(s)	335, 700, 836, 862
Hpy8I	GTNNAC	3 cut(s)	61, 112, 414
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	6 cut(s)	92, 470, 517, 676, 841, 936
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4V	TGCA	1 cut(s)	820
HpyF10VI	GCNNNNNNNGC	1 cut(s)	486
HpyF3I	CTNAG	8 cut(s)	64, 177, 458, 485, 608, 633, 855, 971
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	571, 865
HspAI	GCGC	1 cut(s)	870
Ksp22I	TGATCA	1 cut(s)	126
Kzo9I	GATC	3 cut(s)	126, 304, 331
LmnI	GCTCC	1 cut(s)	39
Lsp1109I	GCAGC	2 cut(s)	764, 832
LweI	GCATC	2 cut(s)	21, 947
MaeI	CTAG	1 cut(s)	87
MaeIII	GTNAC	4 cut(s)	20, 89, 250, 829
MalI	GATC	3 cut(s)	128, 306, 333
MboI	GATC	3 cut(s)	126, 304, 331
MboII	GAAGA	5 cut(s)	212, 506, 596, 673, 811
MluCI	AATT	5 cut(s)	102, 350, 424, 434, 498
MlyI	GAGTC	5 cut(s)	65, 224, 247, 613, 874
MmeI	TCCRAC	4 cut(s)	69, 243, 336, 447
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	3 cut(s)	56, 243, 276
MvaI	CCWGG	2 cut(s)	56, 243
MvnI	CGCG	1 cut(s)	870
MwoI	GCNNNNNNNGC	1 cut(s)	486
NciI	CCSGG	1 cut(s)	276
NdeII	GATC	3 cut(s)	126, 304, 331
NlaIII	CATG	2 cut(s)	571, 865
NlaIV	GGNNCC	3 cut(s)	649, 687, 912
NmeAIII	GCCGAG	2 cut(s)	142, 676
NmuCI	GTSAC	2 cut(s)	20, 250
NspV	TTCGAA	1 cut(s)	96
PagI	TCATGA	1 cut(s)	861
PceI	AGGCCT	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	874
PfeI	GAWTC	1 cut(s)	293
PflMI	CCANNNNNTGG	2 cut(s)	587, 941
PkrI	GCNGC	5 cut(s)	616, 751, 754, 783, 822
PleI	GAGTC	5 cut(s)	65, 223, 247, 612, 873
PpsI	GAGTC	5 cut(s)	65, 223, 247, 612, 873
Psp6I	CCWGG	2 cut(s)	54, 241
PspGI	CCWGG	2 cut(s)	54, 241
PspN4I	GGNNCC	3 cut(s)	649, 687, 912
PspPI	GGNCC	3 cut(s)	288, 309, 967
PstNI	CAGNNNCTG	1 cut(s)	941
Rsr2I	CGGWCCG	1 cut(s)	309
RsrII	CGGWCCG	1 cut(s)	309
SatI	GCNGC	5 cut(s)	615, 750, 753, 782, 821
Sau3AI	GATC	3 cut(s)	126, 304, 331
Sau96I	GGNCC	3 cut(s)	288, 309, 967
SchI	GAGTC	5 cut(s)	65, 224, 247, 613, 874
ScrFI	CCNGG	3 cut(s)	56, 243, 276
SfaNI	GCATC	2 cut(s)	21, 947
SfuI	TTCGAA	1 cut(s)	96
SinI	GGWCC	2 cut(s)	288, 309
SmlI	CTYRAG	2 cut(s)	335, 824
SmoI	CTYRAG	2 cut(s)	335, 824
Sse9I	AATT	5 cut(s)	102, 350, 424, 434, 498
SseBI	AGGCCT	1 cut(s)	133
SsiI	CCGC	5 cut(s)	362, 615, 750, 781, 907
SspMI	CTAG	1 cut(s)	87
StuI	AGGCCT	1 cut(s)	133
StyD4I	CCNGG	3 cut(s)	54, 241, 274
TaaI	ACNGT	1 cut(s)	320
TaqI	TCGA	1 cut(s)	96
TaqII	GACCGA	1 cut(s)	297
TasI	AATT	5 cut(s)	102, 350, 424, 434, 498
TauI	GCSGC	3 cut(s)	617, 752, 784
TfiI	GAWTC	1 cut(s)	293
TscAI	CASTG	3 cut(s)	307, 762, 903
TseFI	GTSAC	2 cut(s)	20, 250
TseI	GCWGC	2 cut(s)	752, 820
Tsp45I	GTSAC	2 cut(s)	20, 250
TspDTI	ATGAA	3 cut(s)	812, 850, 900
TspGWI	ACGGA	1 cut(s)	942
TspRI	CASTG	3 cut(s)	307, 762, 903
Van91I	CCANNNNNTGG	2 cut(s)	587, 941
VpaK11BI	GGWCC	2 cut(s)	288, 309
XapI	RAATTY	2 cut(s)	424, 434
XcmI	CCANNNNNNNNNTGG	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	413
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.