Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008074

Physical Location & Seq

Genomic Coordinates Reverse (-)

46099804 .. 46100790

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00032260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCTGGGCTAAGAGTGAAGAGGATTCGATTAAGTCCGATAACCCGAGCTGGATTTACCTGGTTTCGGTCACTACGTATAAGGAATCAGGTGGGTTATGGTCTGATTCGGCTAATGTCTGATGATTGGAAATGTCATGATTTTGAGGTGAGAAACGAGTTGGGTTTCGCAGAAAATGAGCAAAGTCGTGTGCTTTCGGAGCATGCGGAGGAGAGTTTGGGGAAATTCGGGTCGGATGAGGCGGAAGGGAAAGTGAGTTTCCAAGAAATTGGGGAAGTTGGAAGCTTTGATAAGGATTCAGACAAGTTTCGGTCTGATTCTGGCCGAGAAAGCTTGGTTTCTGTGAAATTTGACAAGGAGGGTGGTTCAAGTGACTTGAACAAGGAATCAGCAGATGAAGAATCGGCTGAGACTCAAATTGTTGCAGTGGAAGAAGTGAAAACGGTGGCGAAGTCGGGTGGTGAGGGTGAGATGAGGGTGGTCTTGTGGTGGAAGGTTCCATTGGAGGTGTTGAAGTATTGCATTTTCAAGGTGAGTCCTGTTTGGTCTTTCTCTGTGCCGCAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

21.33

Weight (kDa)

5.17

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13530 AT4G13530
fragaria_vesca	FvH4_2g00770 FvH4_2g00770
malus_domestica	MD05G1003400.v1.1 MD10G1004400.v1.1
prunus_persica	Prupe.8G006800_v2.0.a1 Prupe.8G006800_v2.0.a1
pyrus_communis	pycom05g00310 pycom10g00350
rosa_chinensis	RchiOBHm_Chr6g0251151
rosa_laevigata	RLG00000015479
rosa_multiflora	Rmu_sc0001307.1_g000016 Rmu_sc0002219.1_g000020 Rmu_sc0014052.1_g000003
rosa_roxburghii	Rroxscaffold_1G00032260 Rroxscaffold_7G00216990
rosa_rugosa	Rorug05G0500600
rosa_samantha	Rh5CG360700 Rh6AG009700 Rh6BG002200 Rh6CG006400 Rh6DG006800
rosa_wichuraiana	Rw6G000970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	206, 242, 560
AcoI	YGGCCR	1 cut(s)	322
AcsI	RAATTY	2 cut(s)	224, 347
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	4 cut(s)	369, 379, 514, 529
AjnI	CCWGG	1 cut(s)	59
AjuI	GAANNNNNNNTTGG	2 cut(s)	485, 517
AluBI	AGCT	3 cut(s)	50, 285, 333
AluI	AGCT	3 cut(s)	50, 285, 333
Alw26I	GTCTC	1 cut(s)	404
Ama87I	CYCGRG	1 cut(s)	45
AoxI	GGCC	1 cut(s)	322
ApeKI	GCWGC	1 cut(s)	562
ApoI	RAATTY	2 cut(s)	224, 347
AsuHPI	GGTGA	4 cut(s)	160, 473, 479, 544
AvaI	CYCGRG	1 cut(s)	45
BciT130I	CCWGG	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	404
BisI	GCNGC	2 cut(s)	560, 563
BlsI	GCNGC	2 cut(s)	561, 564
Bme1390I	CCNGG	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	45
BmiI	GGNNCC	1 cut(s)	498
BmrFI	CCNGG	1 cut(s)	61
BsaAI	YACGTR	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	61
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	399
BseRI	GAGGAG	1 cut(s)	224
BseYI	CCCAGC	1 cut(s)	5
BshFI	GGCC	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	404
BsnI	GGCC	1 cut(s)	324
BsoBI	CYCGRG	1 cut(s)	45
BspACI	CCGC	3 cut(s)	206, 242, 560
BspANI	GGCC	1 cut(s)	324
BspCNI	CTCAG	1 cut(s)	400
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	498
Bst2UI	CCWGG	1 cut(s)	61
Bst4CI	ACNGT	1 cut(s)	445
Bst6I	CTCTTC	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	2 cut(s)	11, 408
BstF5I	GGATG	1 cut(s)	241
BstMAI	GTCTC	1 cut(s)	404
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 330
BstNI	CCWGG	1 cut(s)	61
BstNSI	RCATGY	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	59
BstSNI	TACGTA	1 cut(s)	77
BstXI	CCANNNNNNTGG	1 cut(s)	269
BsuRI	GGCC	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	241
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	1 cut(s)	204
CciI	TCATGA	1 cut(s)	136
CsiI	ACCWGGT	1 cut(s)	59
CspCI	CAANNNNNGTGG	2 cut(s)	343, 378
CviAII	CATG	2 cut(s)	137, 203
CviJI	RGCY	8 cut(s)	5, 10, 50, 112, 285, 324, 333, 407
CviKI_1	RGCY	8 cut(s)	5, 10, 50, 112, 285, 324, 333, 407
DdeI	CTNAG	2 cut(s)	11, 408
EaeI	YGGCCR	1 cut(s)	322
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
EciI	GGCGGA	1 cut(s)	257
Eco105I	TACGTA	1 cut(s)	77
Eco88I	CYCGRG	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	59
FaeI	CATG	2 cut(s)	140, 206
FaiI	YATR	4 cut(s)	80, 99, 138, 204
FatI	CATG	2 cut(s)	136, 202
Fnu4HI	GCNGC	2 cut(s)	560, 563
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	2 cut(s)	560, 563
GluI	GCNGC	2 cut(s)	560, 563
GsaI	CCCAGC	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	324
Hin1II	CATG	2 cut(s)	140, 206
HindIII	AAGCTT	2 cut(s)	283, 331
HinfI	GANTC	9 cut(s)	25, 85, 106, 296, 317, 386, 401, 412, 535
HphI	GGTGA	4 cut(s)	160, 473, 479, 544
Hpy188I	TCNGA	7 cut(s)	39, 105, 121, 199, 235, 301, 316
Hpy188III	TCNNGA	1 cut(s)	137
HpyAV	CCTTC	2 cut(s)	239, 487
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	2 cut(s)	425, 522
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 330
HpyF3I	CTNAG	2 cut(s)	11, 408
HpySE526I	ACGT	1 cut(s)	76
Hsp92II	CATG	2 cut(s)	140, 206
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	6 cut(s)	36, 46, 73, 74, 306, 552
MabI	ACCWGGT	1 cut(s)	59
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	2 cut(s)	69, 371
MboII	GAAGA	3 cut(s)	31, 410, 443
MluCI	AATT	4 cut(s)	224, 267, 347, 417
MlyI	GAGTC	2 cut(s)	406, 544
MmeI	TCCRAC	2 cut(s)	213, 259
MnlI	CCTC	8 cut(s)	15, 139, 202, 232, 352, 457, 468, 499
MseI	TTAA	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	61
MvaI	CCWGG	1 cut(s)	61
MwoI	GCNNNNNNNGC	2 cut(s)	199, 330
NlaIII	CATG	2 cut(s)	140, 206
NlaIV	GGNNCC	1 cut(s)	498
NmeAIII	GCCGAG	1 cut(s)	350
NmuCI	GTSAC	2 cut(s)	69, 371
NspI	RCATGY	1 cut(s)	206
PaeI	GCATGC	1 cut(s)	206
PagI	TCATGA	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	1 cut(s)	73
PfeI	GAWTC	7 cut(s)	25, 85, 106, 296, 317, 386, 401
PkrI	GCNGC	2 cut(s)	561, 564
PleI	GAGTC	2 cut(s)	406, 543
PpsI	GAGTC	2 cut(s)	406, 543
Ppu21I	YACGTR	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	59
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	498
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	2 cut(s)	560, 563
SchI	GAGTC	2 cut(s)	406, 544
ScrFI	CCNGG	1 cut(s)	61
SexAI	ACCWGGT	1 cut(s)	59
SnaBI	TACGTA	1 cut(s)	77
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	4 cut(s)	224, 267, 347, 417
SsiI	CCGC	3 cut(s)	206, 242, 560
StyD4I	CCNGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	445
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	1 cut(s)	28
TaqII	GACCGA	2 cut(s)	57, 300
TasI	AATT	4 cut(s)	224, 267, 347, 417
TauI	GCSGC	1 cut(s)	562
TfiI	GAWTC	7 cut(s)	25, 85, 106, 296, 317, 386, 401
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	1 cut(s)	432
TseFI	GTSAC	2 cut(s)	69, 371
TseI	GCWGC	1 cut(s)	562
Tsp45I	GTSAC	2 cut(s)	69, 371
TspDTI	ATGAA	1 cut(s)	411
TspRI	CASTG	1 cut(s)	432
XapI	RAATTY	2 cut(s)	224, 347
XceI	RCATGY	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.