RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G14300 AT4G14300 |
| fragaria_vesca | FvH4_2g20810 FvH4_4g04320 FvH4_4g04320 FvH4_4g04320 FvH4_4g04320 |
| malus_domestica | MD05G1191700.v1.1 MD13G1219200.v1.1 MD16G1224500.v1.1 |
| prunus_persica | Prupe.1G045900_v2.0.a1 Prupe.1G045900_v2.0.a1 Prupe.8G218100_v2.0.a1 |
| pyrus_communis | pycom05g17830 pycom05g17870 pycom10g15490 pycom13g19410 pycom16g18790 |
| rosa_chinensis | RchiOBHm_Chr4g0394771 RchiOBHm_Chr6g0287221 |
| rosa_laevigata | RLG00000009663 RLG00000012517 |
| rosa_multiflora | Rmu_sc0005297.1_g000024 Rmu_sc0005356.1_g000004 |
| rosa_roxburghii | Rroxscaffold_5G00339810 Rroxscaffold_7G00181660 |
| rosa_rugosa | Rorug03G0361600.1 Rorug06G0185900 |
| rosa_samantha | Rh4AG055000 Rh4BG052900 Rh4CG059700 Rh4DG051400 Rh6AG297400 Rh6BG302800 Rh6CG307300 Rh6CG310700 Rh6DG294400 |
| rosa_wichuraiana | Rw4G004390 Rw6G025690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 761, 773 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 716, 857, 938 |
| AccBSI | CCGCTC | 1 cut(s) | 528 |
| AccI | GTMKAC | 3 cut(s) | 133, 492, 1222 |
| AciI | CCGC | 3 cut(s) | 488, 528, 1110 |
| AclWI | GGATC | 4 cut(s) | 18, 161, 174, 1171 |
| AcuI | CTGAAG | 1 cut(s) | 501 |
| AcyI | GRCGYC | 1 cut(s) | 1096 |
| AfaI | GTAC | 4 cut(s) | 386, 874, 1040, 1205 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 581, 716, 857, 938, 1106, 1130, 1187 |
| AgsI | TTSAA | 4 cut(s) | 194, 392, 542, 1116 |
| AjnI | CCWGG | 7 cut(s) | 432, 574, 621, 850, 931, 973, 1123 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 954, 986 |
| AluBI | AGCT | 6 cut(s) | 22, 64, 124, 911, 983, 1073 |
| AluI | AGCT | 6 cut(s) | 22, 64, 124, 911, 983, 1073 |
| Alw21I | GWGCWC | 1 cut(s) | 556 |
| Alw26I | GTCTC | 2 cut(s) | 111, 268 |
| AlwI | GGATC | 4 cut(s) | 18, 161, 174, 1171 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 857 |
| AoxI | GGCC | 2 cut(s) | 400, 1228 |
| ApeKI | GCWGC | 5 cut(s) | 256, 682, 950, 980, 1073 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 375, 1051 |
| AspA2I | CCTAGG | 1 cut(s) | 137 |
| AspLEI | GCGC | 2 cut(s) | 737, 815 |
| AspS9I | GGNCC | 1 cut(s) | 401 |
| AsuC2I | CCSGG | 1 cut(s) | 766 |
| AsuHPI | GGTGA | 4 cut(s) | 70, 320, 990, 1169 |
| AvrII | CCTAGG | 1 cut(s) | 137 |
| BamHI | GGATCC | 1 cut(s) | 166 |
| BanI | GGYRCC | 2 cut(s) | 761, 773 |
| BauI | CACGAG | 1 cut(s) | 450 |
| Bbv12I | GWGCWC | 1 cut(s) | 556 |
| BbvI | GCAGC | 5 cut(s) | 268, 694, 937, 992, 1060 |
| BccI | CCATC | 5 cut(s) | 647, 718, 1009, 1154, 1205 |
| BciT130I | CCWGG | 7 cut(s) | 434, 576, 623, 852, 933, 975, 1125 |
| BcnI | CCSGG | 1 cut(s) | 766 |
| BcoDI | GTCTC | 2 cut(s) | 111, 268 |
| BfaI | CTAG | 4 cut(s) | 138, 294, 915, 1101 |
| BfmI | CTRYAG | 1 cut(s) | 1009 |
| BfoI | RGCGCY | 2 cut(s) | 738, 816 |
| BglII | AGATCT | 1 cut(s) | 333 |
| BisI | GCNGC | 5 cut(s) | 257, 683, 951, 981, 1074 |
| BlnI | CCTAGG | 1 cut(s) | 137 |
| BlsI | GCNGC | 5 cut(s) | 258, 684, 952, 982, 1075 |
| BmcAI | AGTACT | 2 cut(s) | 386, 874 |
| Bme1390I | CCNGG | 8 cut(s) | 434, 576, 623, 766, 852, 933, 975, 1125 |
| BmgT120I | GGNCC | 1 cut(s) | 401 |
| BmiI | GGNNCC | 4 cut(s) | 168, 763, 775, 929 |
| BmrFI | CCNGG | 8 cut(s) | 434, 576, 623, 766, 852, 933, 975, 1125 |
| BmrI | ACTGGG | 1 cut(s) | 285 |
| BmsI | GCATC | 4 cut(s) | 301, 475, 556, 694 |
| BmuI | ACTGGG | 1 cut(s) | 285 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 108, 140 |
| BpmI | CTGGAG | 5 cut(s) | 324, 597, 822, 891, 897 |
| BpuMI | CCSGG | 1 cut(s) | 766 |
| BsaBI | GATNNNNATC | 2 cut(s) | 9, 570 |
| BsaHI | GRCGYC | 1 cut(s) | 1096 |
| BsaJI | CCNNGG | 5 cut(s) | 137, 622, 931, 1018, 1123 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 581, 716, 857, 938, 1106, 1130, 1187 |
| Bse1I | ACTGG | 5 cut(s) | 280, 382, 796, 880, 1231 |
| Bse3DI | GCAATG | 1 cut(s) | 643 |
| Bse8I | GATNNNNATC | 2 cut(s) | 9, 570 |
| BseBI | CCWGG | 7 cut(s) | 434, 576, 623, 852, 933, 975, 1125 |
| BseDI | CCNNGG | 5 cut(s) | 137, 622, 931, 1018, 1123 |
| BseJI | GATNNNNATC | 2 cut(s) | 9, 570 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 581, 716, 857, 938, 1106, 1130, 1187 |
| BseMI | GCAATG | 1 cut(s) | 643 |
| BseMII | CTCAG | 2 cut(s) | 56, 113 |
| BseNI | ACTGG | 5 cut(s) | 280, 382, 796, 880, 1231 |
| BseRI | GAGGAG | 2 cut(s) | 266, 975 |
| BseXI | GCAGC | 5 cut(s) | 268, 694, 937, 992, 1060 |
| BsgI | GTGCAG | 1 cut(s) | 999 |
| BshFI | GGCC | 2 cut(s) | 402, 1230 |
| BshNI | GGYRCC | 2 cut(s) | 761, 773 |
| BsiHKAI | GWGCWC | 1 cut(s) | 556 |
| BsiSI | CCGG | 1 cut(s) | 765 |
| BslFI | GGGAC | 1 cut(s) | 914 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 581, 716, 857, 938, 1106, 1130, 1187 |
| BsmAI | GTCTC | 2 cut(s) | 111, 268 |
| BsmFI | GGGAC | 1 cut(s) | 914 |
| BsnI | GGCC | 2 cut(s) | 402, 1230 |
| Bsp1286I | GDGCHC | 1 cut(s) | 556 |
| Bsp143I | GATC | 6 cut(s) | 10, 166, 333, 590, 1163, 1172 |
| BspACI | CCGC | 3 cut(s) | 488, 528, 1110 |
| BspANI | GGCC | 2 cut(s) | 402, 1230 |
| BspCNI | CTCAG | 2 cut(s) | 57, 112 |
| BspLI | GGNNCC | 4 cut(s) | 168, 763, 775, 929 |
| BspPI | GGATC | 4 cut(s) | 18, 161, 174, 1171 |
| BspQI | GCTCTTC | 1 cut(s) | 561 |
| BspT107I | GGYRCC | 2 cut(s) | 761, 773 |
| BsrBI | CCGCTC | 1 cut(s) | 528 |
| BsrDI | GCAATG | 1 cut(s) | 643 |
| BsrI | ACTGG | 5 cut(s) | 280, 382, 796, 880, 1231 |
| BssECI | CCNNGG | 5 cut(s) | 137, 622, 931, 1018, 1123 |
| BssMI | GATC | 6 cut(s) | 10, 166, 333, 590, 1163, 1172 |
| BssNI | GRCGYC | 1 cut(s) | 1096 |
| BssSI | CACGAG | 1 cut(s) | 450 |
| BssT1I | CCWWGG | 2 cut(s) | 137, 1018 |
| Bst2BI | CACGAG | 1 cut(s) | 450 |
| Bst2UI | CCWGG | 7 cut(s) | 434, 576, 623, 852, 933, 975, 1125 |
| Bst4CI | ACNGT | 4 cut(s) | 446, 497, 1028, 1043 |
| Bst6I | CTCTTC | 3 cut(s) | 227, 366, 561 |
| BstACI | GRCGYC | 1 cut(s) | 1096 |
| BstC8I | GCNNGC | 4 cut(s) | 350, 552, 739, 859 |
| BstDEI | CTNAG | 2 cut(s) | 65, 99 |
| BstEII | GGTNACC | 1 cut(s) | 617 |
| BstH2I | RGCGCY | 2 cut(s) | 738, 816 |
| BstHHI | GCGC | 2 cut(s) | 737, 815 |
| BstKTI | GATC | 6 cut(s) | 13, 169, 336, 593, 1166, 1175 |
| BstMAI | GTCTC | 2 cut(s) | 111, 268 |
| BstMBI | GATC | 6 cut(s) | 10, 166, 333, 590, 1163, 1172 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 642 |
| BstNI | CCWGG | 7 cut(s) | 434, 576, 623, 852, 933, 975, 1125 |
| BstPI | GGTNACC | 1 cut(s) | 617 |
| BstSCI | CCNGG | 8 cut(s) | 432, 574, 621, 764, 850, 931, 973, 1123 |
| BstSFI | CTRYAG | 1 cut(s) | 1009 |
| BstV1I | GCAGC | 5 cut(s) | 268, 694, 937, 992, 1060 |
| BstX2I | RGATCY | 3 cut(s) | 166, 333, 1163 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 629 |
| BstYI | RGATCY | 3 cut(s) | 166, 333, 1163 |
| BsuRI | GGCC | 2 cut(s) | 402, 1230 |
| BtsIMutI | CAGTG | 3 cut(s) | 502, 789, 1048 |
| Cac8I | GCNNGC | 4 cut(s) | 350, 552, 739, 859 |
| CaiI | CAGNNNCTG | 1 cut(s) | 857 |
| CfoI | GCGC | 2 cut(s) | 737, 815 |
| Cfr13I | GGNCC | 1 cut(s) | 401 |
| CseI | GACGC | 1 cut(s) | 1085 |
| Csp6I | GTAC | 4 cut(s) | 385, 873, 1039, 1204 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 342, 377 |
| CviAII | CATG | 6 cut(s) | 42, 241, 424, 518, 897, 1141 |
| CviQI | GTAC | 4 cut(s) | 385, 873, 1039, 1204 |
| DdeI | CTNAG | 2 cut(s) | 65, 99 |
| DpnI | GATC | 6 cut(s) | 12, 168, 335, 592, 1165, 1174 |
| DpnII | GATC | 6 cut(s) | 10, 166, 333, 590, 1163, 1172 |
| Eam1104I | CTCTTC | 3 cut(s) | 227, 366, 561 |
| EarI | CTCTTC | 3 cut(s) | 227, 366, 561 |
| Eco130I | CCWWGG | 2 cut(s) | 137, 1018 |
| Eco57I | CTGAAG | 1 cut(s) | 501 |
| Eco91I | GGTNACC | 1 cut(s) | 617 |
| EcoO65I | GGTNACC | 1 cut(s) | 617 |
| EcoRII | CCWGG | 7 cut(s) | 432, 574, 621, 850, 931, 973, 1123 |
| EcoT14I | CCWWGG | 2 cut(s) | 137, 1018 |
| ErhI | CCWWGG | 2 cut(s) | 137, 1018 |
| FaeI | CATG | 6 cut(s) | 45, 244, 427, 521, 900, 1144 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 38, 320, 352 |
| FaqI | GGGAC | 1 cut(s) | 914 |
| FatI | CATG | 6 cut(s) | 41, 240, 423, 517, 896, 1140 |
| FauNDI | CATATG | 1 cut(s) | 1078 |
| FblI | GTMKAC | 3 cut(s) | 133, 492, 1222 |
| Fnu4HI | GCNGC | 5 cut(s) | 257, 683, 951, 981, 1074 |
| Fsp4HI | GCNGC | 5 cut(s) | 257, 683, 951, 981, 1074 |
| FspBI | CTAG | 4 cut(s) | 138, 294, 915, 1101 |
| GlaI | GCGC | 2 cut(s) | 736, 814 |
| GluI | GCNGC | 5 cut(s) | 257, 683, 951, 981, 1074 |
| GsuI | CTGGAG | 5 cut(s) | 324, 597, 822, 891, 897 |
| HaeII | RGCGCY | 2 cut(s) | 738, 816 |
| HaeIII | GGCC | 2 cut(s) | 402, 1230 |
| HapII | CCGG | 1 cut(s) | 765 |
| HgaI | GACGC | 1 cut(s) | 1085 |
| HhaI | GCGC | 2 cut(s) | 737, 815 |
| Hin1I | GRCGYC | 1 cut(s) | 1096 |
| Hin1II | CATG | 6 cut(s) | 45, 244, 427, 521, 900, 1144 |
| Hin6I | GCGC | 2 cut(s) | 735, 813 |
| HinP1I | GCGC | 2 cut(s) | 735, 813 |
| HincII | GTYRAC | 2 cut(s) | 134, 1223 |
| HindII | GTYRAC | 2 cut(s) | 134, 1223 |
| HindIII | AAGCTT | 1 cut(s) | 20 |
| HinfI | GANTC | 5 cut(s) | 5, 280, 476, 665, 1052 |
| HpaII | CCGG | 1 cut(s) | 765 |
| HphI | GGTGA | 4 cut(s) | 70, 320, 990, 1169 |
| Hpy166II | GTNNAC | 6 cut(s) | 134, 493, 533, 587, 707, 1223 |
| Hpy188I | TCNGA | 5 cut(s) | 10, 166, 481, 888, 1177 |
| Hpy188III | TCNNGA | 6 cut(s) | 179, 194, 246, 267, 294, 303 |
| Hpy8I | GTNNAC | 6 cut(s) | 134, 493, 533, 587, 707, 1223 |
| HpyAV | CCTTC | 2 cut(s) | 180, 481 |
| HpyCH4III | ACNGT | 4 cut(s) | 446, 497, 1028, 1043 |
| HpyCH4IV | ACGT | 1 cut(s) | 658 |
| HpyCH4V | TGCA | 5 cut(s) | 419, 505, 682, 980, 1076 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 642 |
| HpyF3I | CTNAG | 2 cut(s) | 65, 99 |
| HpySE526I | ACGT | 1 cut(s) | 658 |
| Hsp92I | GRCGYC | 1 cut(s) | 1096 |
| Hsp92II | CATG | 6 cut(s) | 45, 244, 427, 521, 900, 1144 |
| HspAI | GCGC | 2 cut(s) | 735, 813 |
| Kzo9I | GATC | 6 cut(s) | 10, 166, 333, 590, 1163, 1172 |
| LguI | GCTCTTC | 1 cut(s) | 561 |
| LmnI | GCTCC | 4 cut(s) | 253, 836, 889, 988 |
| Lsp1109I | GCAGC | 5 cut(s) | 268, 694, 937, 992, 1060 |
| LweI | GCATC | 4 cut(s) | 301, 475, 556, 694 |
| MaeI | CTAG | 4 cut(s) | 138, 294, 915, 1101 |
| MaeII | ACGT | 1 cut(s) | 658 |
| MaeIII | GTNAC | 6 cut(s) | 406, 617, 785, 996, 1013, 1182 |
| MalI | GATC | 6 cut(s) | 12, 168, 335, 592, 1165, 1174 |
| MbiI | CCGCTC | 1 cut(s) | 528 |
| MboI | GATC | 6 cut(s) | 10, 166, 333, 590, 1163, 1172 |
| MflI | RGATCY | 3 cut(s) | 166, 333, 1163 |
| MhlI | GDGCHC | 1 cut(s) | 556 |
| MlyI | GAGTC | 1 cut(s) | 470 |
| MmeI | TCCRAC | 3 cut(s) | 322, 676, 1069 |
| MroXI | GAANNNNTTC | 2 cut(s) | 375, 1051 |
| MseI | TTAA | 1 cut(s) | 285 |
| MslI | CAYNNNNRTG | 1 cut(s) | 690 |
| MspI | CCGG | 1 cut(s) | 765 |
| MspR9I | CCNGG | 8 cut(s) | 434, 576, 623, 766, 852, 933, 975, 1125 |
| MvaI | CCWGG | 7 cut(s) | 434, 576, 623, 852, 933, 975, 1125 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 642 |
| NciI | CCSGG | 1 cut(s) | 766 |
| NdeI | CATATG | 1 cut(s) | 1078 |
| NdeII | GATC | 6 cut(s) | 10, 166, 333, 590, 1163, 1172 |
| NlaIII | CATG | 6 cut(s) | 45, 244, 427, 521, 900, 1144 |
| NlaIV | GGNNCC | 4 cut(s) | 168, 763, 775, 929 |
| NmuCI | GTSAC | 3 cut(s) | 406, 996, 1182 |
| PciSI | GCTCTTC | 1 cut(s) | 561 |
| PdmI | GAANNNNTTC | 2 cut(s) | 375, 1051 |
| PfeI | GAWTC | 4 cut(s) | 5, 280, 665, 1052 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 716, 857, 938 |
| PfoI | TCCNGGA | 1 cut(s) | 574 |
| PkrI | GCNGC | 5 cut(s) | 258, 684, 952, 982, 1075 |
| PleI | GAGTC | 1 cut(s) | 470 |
| PpsI | GAGTC | 1 cut(s) | 470 |
| Psp6I | CCWGG | 7 cut(s) | 432, 574, 621, 850, 931, 973, 1123 |
| PspEI | GGTNACC | 1 cut(s) | 617 |
| PspGI | CCWGG | 7 cut(s) | 432, 574, 621, 850, 931, 973, 1123 |
| PspN4I | GGNNCC | 4 cut(s) | 168, 763, 775, 929 |
| PspPI | GGNCC | 1 cut(s) | 401 |
| PstNI | CAGNNNCTG | 1 cut(s) | 857 |
| PsuI | RGATCY | 3 cut(s) | 166, 333, 1163 |
| RsaI | GTAC | 4 cut(s) | 386, 874, 1040, 1205 |
| RsaNI | GTAC | 4 cut(s) | 385, 873, 1039, 1204 |
| RseI | CAYNNNNRTG | 1 cut(s) | 690 |
| SalI | GTCGAC | 2 cut(s) | 132, 1221 |
| SapI | GCTCTTC | 1 cut(s) | 561 |
| SaqAI | TTAA | 1 cut(s) | 285 |
| SatI | GCNGC | 5 cut(s) | 257, 683, 951, 981, 1074 |
| Sau3AI | GATC | 6 cut(s) | 10, 166, 333, 590, 1163, 1172 |
| Sau96I | GGNCC | 1 cut(s) | 401 |
| ScaI | AGTACT | 2 cut(s) | 386, 874 |
| SchI | GAGTC | 1 cut(s) | 470 |
| ScrFI | CCNGG | 8 cut(s) | 434, 576, 623, 766, 852, 933, 975, 1125 |
| SduI | GDGCHC | 1 cut(s) | 556 |
| SfaNI | GCATC | 4 cut(s) | 301, 475, 556, 694 |
| SfcI | CTRYAG | 1 cut(s) | 1009 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 690 |
| SsiI | CCGC | 3 cut(s) | 488, 528, 1110 |
| SspMI | CTAG | 4 cut(s) | 138, 294, 915, 1101 |
| StyD4I | CCNGG | 8 cut(s) | 432, 574, 621, 764, 850, 931, 973, 1123 |
| StyI | CCWWGG | 2 cut(s) | 137, 1018 |
| TaaI | ACNGT | 4 cut(s) | 446, 497, 1028, 1043 |
| TaiI | ACGT | 1 cut(s) | 661 |
| TaqI | TCGA | 4 cut(s) | 133, 180, 474, 1222 |
| TatI | WGTACW | 2 cut(s) | 384, 872 |
| TfiI | GAWTC | 4 cut(s) | 5, 280, 665, 1052 |
| Tru1I | TTAA | 1 cut(s) | 285 |
| Tru9I | TTAA | 1 cut(s) | 285 |
| TscAI | CASTG | 3 cut(s) | 502, 796, 1048 |
| TseFI | GTSAC | 3 cut(s) | 406, 996, 1182 |
| TseI | GCWGC | 5 cut(s) | 256, 682, 950, 980, 1073 |
| Tsp45I | GTSAC | 3 cut(s) | 406, 996, 1182 |
| TspDTI | ATGAA | 4 cut(s) | 30, 69, 384, 654 |
| TspRI | CASTG | 3 cut(s) | 502, 796, 1048 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 716, 857, 938 |
| XbaI | TCTAGA | 1 cut(s) | 293 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 629 |
| XmaJI | CCTAGG | 1 cut(s) | 137 |
| XmiI | GTMKAC | 3 cut(s) | 133, 492, 1222 |
| XmnI | GAANNNNTTC | 2 cut(s) | 375, 1051 |
| XspI | CTAG | 4 cut(s) | 138, 294, 915, 1101 |
| ZrmI | AGTACT | 2 cut(s) | 386, 874 |