AT4G14300

RNA recognition motif

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
8231002 .. 8234281
3280 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G14300.1

Sequence Viewer

Length: 1236 bp
ATGGATTCGGATCAAGGAAAGCTTTTTGTCGGTGGTATTTCATGGGAAACTGATGAAGATAAGCTGAGAGAACATTTCACCAACTATGGAGAGGTTTCTCAGGCTATTGTGATGAGAGACAAGCTCACAGGTCGACCTAGGGGTTTTGGGTTCGTTATCTTCTCGGATCCTTCTGTTCTCGATAGGGTTCTTCAAGAGAAACACAGCATTGATACCAGAGAGGTTGATGTGAAGAGAGCCATGTCAAGAGAGGAGCAGCAAGTCTCTGGAAGAACTGGGAATCTTAATACATCTAGAAGTTCTGGAGGTGATGCTTACAATAAAACCAAGAAGATCTTTGTTGGAGGCTTGCCACCTACTTTGACTGATGAAGAGTTTCGCCAGTACTTTGAAGTTTATGGCCCTGTGACTGATGTTGCAATCATGTATGACCAGGCTACCAACCGTCCTCGTGGGTTTGGATTTGTTTCCTTCGACTCTGAAGATGCGGTAGACAGTGTTTTGCACAAGACTTTCCATGATTTGAGCGGTAAACAAGTTGAAGTAAAGCGTGCTCTTCCTAAAGATGCCAATCCTGGAGGTGGTGGACGATCAATGGGTGGTGGTGGCTCTGGTGGTTACCAGGGTTATGGTGGCAATGAAAGCAGTTATGATGGACGTATGGATTCCAATAGGTTTTTGCAGCATCAAAGTGTTGGAAATGGTTTACCATCTTATGGTTCTTCTGGTTATGGCGCTGGCTATGGAAATGGTAGTAATGGTGCCGGGTATGGTGCCTATGGAGGTTACACTGGTTCTGCTGGAGGTTATGGCGCTGGTGCTACTGCTGGATATGGAGCAACGAACATTCCAGGTGCTGGCTATGGAAGTAGTACTGGAGTTGCTCCGAGAAACTCATGGGACACTCCAGCTTCTAGTGGTTATGGGAACCCAGGCTATGGGAGTGGTGCTGCTCATAGTGGATATGGAGTTCCTGGTGCAGCTCCTCCTACGCAGTCACCATCTGGCTATAGTAACCAAGGCTACGGTTATGGAGGGTACAGTGGAAGTGATTCTGGTTATGGAAATCAAGCTGCATATGGTGTGGTTGGAGGGCGTCCTAGTGGTGGCGGTTCAAACAACCCTGGTAGTGGTGGCTACATGGGAGGTGGTTATGGTGATGGATCTTGGCGATCTGACCCGTCACAAGGTTATGGTGGTGGGTACAATGATGGTCAGGGTCGACAAGGCCAGTAG

Protein Analysis

411

Amino Acids

42.35

Weight (kDa)

5.57

Isoelectric Point (pI)

31.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 8 - 69 2e-14 RNA recognition motif
RRM_7 PF16367 110 - 176 2.3e-07 RNA recognition motif
RRM_1 PF00076 112 - 169 5.2e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 761, 773
AccB7I CCANNNNNTGG 3 cut(s) 716, 857, 938
AccBSI CCGCTC 1 cut(s) 528
AccI GTMKAC 3 cut(s) 133, 492, 1222
AciI CCGC 3 cut(s) 488, 528, 1110
AclWI GGATC 4 cut(s) 18, 161, 174, 1171
AcuI CTGAAG 1 cut(s) 501
AcyI GRCGYC 1 cut(s) 1096
AfaI GTAC 4 cut(s) 386, 874, 1040, 1205
AfiI CCNNNNNNNGG 7 cut(s) 581, 716, 857, 938, 1106, 1130, 1187
AgsI TTSAA 4 cut(s) 194, 392, 542, 1116
AjnI CCWGG 7 cut(s) 432, 574, 621, 850, 931, 973, 1123
AloI GAACNNNNNNTCC 2 cut(s) 954, 986
AluBI AGCT 6 cut(s) 22, 64, 124, 911, 983, 1073
AluI AGCT 6 cut(s) 22, 64, 124, 911, 983, 1073
Alw21I GWGCWC 1 cut(s) 556
Alw26I GTCTC 2 cut(s) 111, 268
AlwI GGATC 4 cut(s) 18, 161, 174, 1171
AlwNI CAGNNNCTG 1 cut(s) 857
AoxI GGCC 2 cut(s) 400, 1228
ApeKI GCWGC 5 cut(s) 256, 682, 950, 980, 1073
Asp700I GAANNNNTTC 2 cut(s) 375, 1051
AspA2I CCTAGG 1 cut(s) 137
AspLEI GCGC 2 cut(s) 737, 815
AspS9I GGNCC 1 cut(s) 401
AsuC2I CCSGG 1 cut(s) 766
AsuHPI GGTGA 4 cut(s) 70, 320, 990, 1169
AvrII CCTAGG 1 cut(s) 137
BamHI GGATCC 1 cut(s) 166
BanI GGYRCC 2 cut(s) 761, 773
BauI CACGAG 1 cut(s) 450
Bbv12I GWGCWC 1 cut(s) 556
BbvI GCAGC 5 cut(s) 268, 694, 937, 992, 1060
BccI CCATC 5 cut(s) 647, 718, 1009, 1154, 1205
BciT130I CCWGG 7 cut(s) 434, 576, 623, 852, 933, 975, 1125
BcnI CCSGG 1 cut(s) 766
BcoDI GTCTC 2 cut(s) 111, 268
BfaI CTAG 4 cut(s) 138, 294, 915, 1101
BfmI CTRYAG 1 cut(s) 1009
BfoI RGCGCY 2 cut(s) 738, 816
BglII AGATCT 1 cut(s) 333
BisI GCNGC 5 cut(s) 257, 683, 951, 981, 1074
BlnI CCTAGG 1 cut(s) 137
BlsI GCNGC 5 cut(s) 258, 684, 952, 982, 1075
BmcAI AGTACT 2 cut(s) 386, 874
Bme1390I CCNGG 8 cut(s) 434, 576, 623, 766, 852, 933, 975, 1125
BmgT120I GGNCC 1 cut(s) 401
BmiI GGNNCC 4 cut(s) 168, 763, 775, 929
BmrFI CCNGG 8 cut(s) 434, 576, 623, 766, 852, 933, 975, 1125
BmrI ACTGGG 1 cut(s) 285
BmsI GCATC 4 cut(s) 301, 475, 556, 694
BmuI ACTGGG 1 cut(s) 285
BplI GAGNNNNNCTC 2 cut(s) 108, 140
BpmI CTGGAG 5 cut(s) 324, 597, 822, 891, 897
BpuMI CCSGG 1 cut(s) 766
BsaBI GATNNNNATC 2 cut(s) 9, 570
BsaHI GRCGYC 1 cut(s) 1096
BsaJI CCNNGG 5 cut(s) 137, 622, 931, 1018, 1123
Bsc4I CCNNNNNNNGG 7 cut(s) 581, 716, 857, 938, 1106, 1130, 1187
Bse1I ACTGG 5 cut(s) 280, 382, 796, 880, 1231
Bse3DI GCAATG 1 cut(s) 643
Bse8I GATNNNNATC 2 cut(s) 9, 570
BseBI CCWGG 7 cut(s) 434, 576, 623, 852, 933, 975, 1125
BseDI CCNNGG 5 cut(s) 137, 622, 931, 1018, 1123
BseJI GATNNNNATC 2 cut(s) 9, 570
BseLI CCNNNNNNNGG 7 cut(s) 581, 716, 857, 938, 1106, 1130, 1187
BseMI GCAATG 1 cut(s) 643
BseMII CTCAG 2 cut(s) 56, 113
BseNI ACTGG 5 cut(s) 280, 382, 796, 880, 1231
BseRI GAGGAG 2 cut(s) 266, 975
BseXI GCAGC 5 cut(s) 268, 694, 937, 992, 1060
BsgI GTGCAG 1 cut(s) 999
BshFI GGCC 2 cut(s) 402, 1230
BshNI GGYRCC 2 cut(s) 761, 773
BsiHKAI GWGCWC 1 cut(s) 556
BsiSI CCGG 1 cut(s) 765
BslFI GGGAC 1 cut(s) 914
BslI CCNNNNNNNGG 7 cut(s) 581, 716, 857, 938, 1106, 1130, 1187
BsmAI GTCTC 2 cut(s) 111, 268
BsmFI GGGAC 1 cut(s) 914
BsnI GGCC 2 cut(s) 402, 1230
Bsp1286I GDGCHC 1 cut(s) 556
Bsp143I GATC 6 cut(s) 10, 166, 333, 590, 1163, 1172
BspACI CCGC 3 cut(s) 488, 528, 1110
BspANI GGCC 2 cut(s) 402, 1230
BspCNI CTCAG 2 cut(s) 57, 112
BspLI GGNNCC 4 cut(s) 168, 763, 775, 929
BspPI GGATC 4 cut(s) 18, 161, 174, 1171
BspQI GCTCTTC 1 cut(s) 561
BspT107I GGYRCC 2 cut(s) 761, 773
BsrBI CCGCTC 1 cut(s) 528
BsrDI GCAATG 1 cut(s) 643
BsrI ACTGG 5 cut(s) 280, 382, 796, 880, 1231
BssECI CCNNGG 5 cut(s) 137, 622, 931, 1018, 1123
BssMI GATC 6 cut(s) 10, 166, 333, 590, 1163, 1172
BssNI GRCGYC 1 cut(s) 1096
BssSI CACGAG 1 cut(s) 450
BssT1I CCWWGG 2 cut(s) 137, 1018
Bst2BI CACGAG 1 cut(s) 450
Bst2UI CCWGG 7 cut(s) 434, 576, 623, 852, 933, 975, 1125
Bst4CI ACNGT 4 cut(s) 446, 497, 1028, 1043
Bst6I CTCTTC 3 cut(s) 227, 366, 561
BstACI GRCGYC 1 cut(s) 1096
BstC8I GCNNGC 4 cut(s) 350, 552, 739, 859
BstDEI CTNAG 2 cut(s) 65, 99
BstEII GGTNACC 1 cut(s) 617
BstH2I RGCGCY 2 cut(s) 738, 816
BstHHI GCGC 2 cut(s) 737, 815
BstKTI GATC 6 cut(s) 13, 169, 336, 593, 1166, 1175
BstMAI GTCTC 2 cut(s) 111, 268
BstMBI GATC 6 cut(s) 10, 166, 333, 590, 1163, 1172
BstMWI GCNNNNNNNGC 1 cut(s) 642
BstNI CCWGG 7 cut(s) 434, 576, 623, 852, 933, 975, 1125
BstPI GGTNACC 1 cut(s) 617
BstSCI CCNGG 8 cut(s) 432, 574, 621, 764, 850, 931, 973, 1123
BstSFI CTRYAG 1 cut(s) 1009
BstV1I GCAGC 5 cut(s) 268, 694, 937, 992, 1060
BstX2I RGATCY 3 cut(s) 166, 333, 1163
BstXI CCANNNNNNTGG 1 cut(s) 629
BstYI RGATCY 3 cut(s) 166, 333, 1163
BsuRI GGCC 2 cut(s) 402, 1230
BtsIMutI CAGTG 3 cut(s) 502, 789, 1048
Cac8I GCNNGC 4 cut(s) 350, 552, 739, 859
CaiI CAGNNNCTG 1 cut(s) 857
CfoI GCGC 2 cut(s) 737, 815
Cfr13I GGNCC 1 cut(s) 401
CseI GACGC 1 cut(s) 1085
Csp6I GTAC 4 cut(s) 385, 873, 1039, 1204
CspCI CAANNNNNGTGG 2 cut(s) 342, 377
CviAII CATG 6 cut(s) 42, 241, 424, 518, 897, 1141
CviQI GTAC 4 cut(s) 385, 873, 1039, 1204
DdeI CTNAG 2 cut(s) 65, 99
DpnI GATC 6 cut(s) 12, 168, 335, 592, 1165, 1174
DpnII GATC 6 cut(s) 10, 166, 333, 590, 1163, 1172
Eam1104I CTCTTC 3 cut(s) 227, 366, 561
EarI CTCTTC 3 cut(s) 227, 366, 561
Eco130I CCWWGG 2 cut(s) 137, 1018
Eco57I CTGAAG 1 cut(s) 501
Eco91I GGTNACC 1 cut(s) 617
EcoO65I GGTNACC 1 cut(s) 617
EcoRII CCWGG 7 cut(s) 432, 574, 621, 850, 931, 973, 1123
EcoT14I CCWWGG 2 cut(s) 137, 1018
ErhI CCWWGG 2 cut(s) 137, 1018
FaeI CATG 6 cut(s) 45, 244, 427, 521, 900, 1144
FalI AAGNNNNNCTT 3 cut(s) 38, 320, 352
FaqI GGGAC 1 cut(s) 914
FatI CATG 6 cut(s) 41, 240, 423, 517, 896, 1140
FauNDI CATATG 1 cut(s) 1078
FblI GTMKAC 3 cut(s) 133, 492, 1222
Fnu4HI GCNGC 5 cut(s) 257, 683, 951, 981, 1074
Fsp4HI GCNGC 5 cut(s) 257, 683, 951, 981, 1074
FspBI CTAG 4 cut(s) 138, 294, 915, 1101
GlaI GCGC 2 cut(s) 736, 814
GluI GCNGC 5 cut(s) 257, 683, 951, 981, 1074
GsuI CTGGAG 5 cut(s) 324, 597, 822, 891, 897
HaeII RGCGCY 2 cut(s) 738, 816
HaeIII GGCC 2 cut(s) 402, 1230
HapII CCGG 1 cut(s) 765
HgaI GACGC 1 cut(s) 1085
HhaI GCGC 2 cut(s) 737, 815
Hin1I GRCGYC 1 cut(s) 1096
Hin1II CATG 6 cut(s) 45, 244, 427, 521, 900, 1144
Hin6I GCGC 2 cut(s) 735, 813
HinP1I GCGC 2 cut(s) 735, 813
HincII GTYRAC 2 cut(s) 134, 1223
HindII GTYRAC 2 cut(s) 134, 1223
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 5 cut(s) 5, 280, 476, 665, 1052
HpaII CCGG 1 cut(s) 765
HphI GGTGA 4 cut(s) 70, 320, 990, 1169
Hpy166II GTNNAC 6 cut(s) 134, 493, 533, 587, 707, 1223
Hpy188I TCNGA 5 cut(s) 10, 166, 481, 888, 1177
Hpy188III TCNNGA 6 cut(s) 179, 194, 246, 267, 294, 303
Hpy8I GTNNAC 6 cut(s) 134, 493, 533, 587, 707, 1223
HpyAV CCTTC 2 cut(s) 180, 481
HpyCH4III ACNGT 4 cut(s) 446, 497, 1028, 1043
HpyCH4IV ACGT 1 cut(s) 658
HpyCH4V TGCA 5 cut(s) 419, 505, 682, 980, 1076
HpyF10VI GCNNNNNNNGC 1 cut(s) 642
HpyF3I CTNAG 2 cut(s) 65, 99
HpySE526I ACGT 1 cut(s) 658
Hsp92I GRCGYC 1 cut(s) 1096
Hsp92II CATG 6 cut(s) 45, 244, 427, 521, 900, 1144
HspAI GCGC 2 cut(s) 735, 813
Kzo9I GATC 6 cut(s) 10, 166, 333, 590, 1163, 1172
LguI GCTCTTC 1 cut(s) 561
LmnI GCTCC 4 cut(s) 253, 836, 889, 988
Lsp1109I GCAGC 5 cut(s) 268, 694, 937, 992, 1060
LweI GCATC 4 cut(s) 301, 475, 556, 694
MaeI CTAG 4 cut(s) 138, 294, 915, 1101
MaeII ACGT 1 cut(s) 658
MaeIII GTNAC 6 cut(s) 406, 617, 785, 996, 1013, 1182
MalI GATC 6 cut(s) 12, 168, 335, 592, 1165, 1174
MbiI CCGCTC 1 cut(s) 528
MboI GATC 6 cut(s) 10, 166, 333, 590, 1163, 1172
MflI RGATCY 3 cut(s) 166, 333, 1163
MhlI GDGCHC 1 cut(s) 556
MlyI GAGTC 1 cut(s) 470
MmeI TCCRAC 3 cut(s) 322, 676, 1069
MroXI GAANNNNTTC 2 cut(s) 375, 1051
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 1 cut(s) 690
MspI CCGG 1 cut(s) 765
MspR9I CCNGG 8 cut(s) 434, 576, 623, 766, 852, 933, 975, 1125
MvaI CCWGG 7 cut(s) 434, 576, 623, 852, 933, 975, 1125
MwoI GCNNNNNNNGC 1 cut(s) 642
NciI CCSGG 1 cut(s) 766
NdeI CATATG 1 cut(s) 1078
NdeII GATC 6 cut(s) 10, 166, 333, 590, 1163, 1172
NlaIII CATG 6 cut(s) 45, 244, 427, 521, 900, 1144
NlaIV GGNNCC 4 cut(s) 168, 763, 775, 929
NmuCI GTSAC 3 cut(s) 406, 996, 1182
PciSI GCTCTTC 1 cut(s) 561
PdmI GAANNNNTTC 2 cut(s) 375, 1051
PfeI GAWTC 4 cut(s) 5, 280, 665, 1052
PflMI CCANNNNNTGG 3 cut(s) 716, 857, 938
PfoI TCCNGGA 1 cut(s) 574
PkrI GCNGC 5 cut(s) 258, 684, 952, 982, 1075
PleI GAGTC 1 cut(s) 470
PpsI GAGTC 1 cut(s) 470
Psp6I CCWGG 7 cut(s) 432, 574, 621, 850, 931, 973, 1123
PspEI GGTNACC 1 cut(s) 617
PspGI CCWGG 7 cut(s) 432, 574, 621, 850, 931, 973, 1123
PspN4I GGNNCC 4 cut(s) 168, 763, 775, 929
PspPI GGNCC 1 cut(s) 401
PstNI CAGNNNCTG 1 cut(s) 857
PsuI RGATCY 3 cut(s) 166, 333, 1163
RsaI GTAC 4 cut(s) 386, 874, 1040, 1205
RsaNI GTAC 4 cut(s) 385, 873, 1039, 1204
RseI CAYNNNNRTG 1 cut(s) 690
SalI GTCGAC 2 cut(s) 132, 1221
SapI GCTCTTC 1 cut(s) 561
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 5 cut(s) 257, 683, 951, 981, 1074
Sau3AI GATC 6 cut(s) 10, 166, 333, 590, 1163, 1172
Sau96I GGNCC 1 cut(s) 401
ScaI AGTACT 2 cut(s) 386, 874
SchI GAGTC 1 cut(s) 470
ScrFI CCNGG 8 cut(s) 434, 576, 623, 766, 852, 933, 975, 1125
SduI GDGCHC 1 cut(s) 556
SfaNI GCATC 4 cut(s) 301, 475, 556, 694
SfcI CTRYAG 1 cut(s) 1009
SmiMI CAYNNNNRTG 1 cut(s) 690
SsiI CCGC 3 cut(s) 488, 528, 1110
SspMI CTAG 4 cut(s) 138, 294, 915, 1101
StyD4I CCNGG 8 cut(s) 432, 574, 621, 764, 850, 931, 973, 1123
StyI CCWWGG 2 cut(s) 137, 1018
TaaI ACNGT 4 cut(s) 446, 497, 1028, 1043
TaiI ACGT 1 cut(s) 661
TaqI TCGA 4 cut(s) 133, 180, 474, 1222
TatI WGTACW 2 cut(s) 384, 872
TfiI GAWTC 4 cut(s) 5, 280, 665, 1052
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 3 cut(s) 502, 796, 1048
TseFI GTSAC 3 cut(s) 406, 996, 1182
TseI GCWGC 5 cut(s) 256, 682, 950, 980, 1073
Tsp45I GTSAC 3 cut(s) 406, 996, 1182
TspDTI ATGAA 4 cut(s) 30, 69, 384, 654
TspRI CASTG 3 cut(s) 502, 796, 1048
Van91I CCANNNNNTGG 3 cut(s) 716, 857, 938
XbaI TCTAGA 1 cut(s) 293
XcmI CCANNNNNNNNNTGG 1 cut(s) 629
XmaJI CCTAGG 1 cut(s) 137
XmiI GTMKAC 3 cut(s) 133, 492, 1222
XmnI GAANNNNTTC 2 cut(s) 375, 1051
XspI CTAG 4 cut(s) 138, 294, 915, 1101
ZrmI AGTACT 2 cut(s) 386, 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.