Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002787

Physical Location & Seq

Genomic Coordinates Reverse (-)

8141453 .. 8147185

Gene Structure 5733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG051400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGGATTCGGATCAGGGCAAGCTTTTCATCGGCGGGATTTCGTGGGAGACGTCGGAGGATAAGCTGAAGGAGTACTTCAGCAATTACGGCGACGTTTTGCAGACGGTGGTTATGAGAGACAAGATCACTCAAAGACCCAGAGGTTTTGGGTTCGTCGTCTTTGTGGATCCTGCTGTTCTTGATAGGGTTCTTCAGGAAAAGCACACCATCGATGGCAGGACGGTTGAGGCTAAGAGGGCCCTCTCAAGAGAGGAGCAGCAAACTTCTGTTAGATCAGGAAATCCTAATCCTGGTAGAAATGCAGGAAGCGGTGGAAATGTTAGGACCAAGAAGATATTTGTTGGTGGGCTGCCTCCCACTCTAACTGAAGAAGAATTCCGTGAATATTTTGAAGCTTATGGCCATGTAACAGATGTAGTTGTAATGTATGACCAAAATACTGGACGACCTCGTGGATTTGGATTTATTTCATTTGACACTGAAGATGCAGTTGATAGGGTTTTGCACAAGACATTTCATGATTTAAGTGGTAAGCAAGTGGAAGTAAAGAGGGCTCTTCCAAAAGATGCCAATCCTGGTGGGGGTGGCCGTTCCTTGGGGGGTGGTCAGGGCGGTGGTGGTGCATCTGGTGGTGGTTACCAAGGCTATGGGGCATCTGGTGGCAACCCAAATGCATATGATGGTCGAATGGACTCCAACAGGTACATGCAATCTCAGAGCACTGGAGGTGGTTTTCCTCCTTATGGTTCTTCTGGGTATAGTGCACCCAGTTATGGGTATGCTCCTTCTAGTAATGGCATTGGTTATGGTGGCTACGGAGGTTATGGTGGTACCAATACTGGATATGGTGGTCCAGCTGCTGCTGCCTATGGAAACCCCAATGCCCCAAATGCTGGTTATGGTGGTGGTCCACCAGGTGCTCCTAGAAGTTCATGGAGCTCCCAAGCCCCCTCAGGATATGGTGGTATGGGCTACGGGAATACTGCTCCTTGGGGTGTTCAAAGTGGCAGTGCAGCTACAGGAAGTGGTGGTCCTGGATCTGCGCCTGCTGGTCAATCTCCTAGTGCAGCGGCTGGGTATGGAACTCAAGGTTATGGTTATGGTGGGTACAGTGGAGGTGATGCATCCTATGGAAATCCATCTGCGTATGGTGCAGTTGGAGGGCGTTCTGGGAGTGTACCAAATAACAACGTTGGTGGTCCAGGTGCGGAGCAAGGTAGTGGTGGTGGATACATTGGAAGTGGCTATGGCGACTCAAATGGAAATGCAGGTTATGGAAATTCTGGTTGGAGAGCTGATCCATCACAAGCTTCTGGAAATTATGGTGGTCAGGCTAATGGCGCTCATGGTGGGCAAGTTGGCTATGGAGGGTATAGCAGTGCTCAGGCACGACAAGCCCAGCAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0022414 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0047484 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0080134 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901000 GO:1901360 GO:1901363 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

469

Amino Acids

47.42

Weight (kDa)

6.54

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	8 - 74	3.3e-14	RNA recognition motif
RRM_7	PF16367	110 - 176	4.9e-07	RNA recognition motif
RRM_1	PF00076	112 - 169	5.7e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14300 AT4G14300
fragaria_vesca	FvH4_2g20810 FvH4_4g04320 FvH4_4g04320 FvH4_4g04320 FvH4_4g04320
malus_domestica	MD05G1191700.v1.1 MD13G1219200.v1.1 MD16G1224500.v1.1
prunus_persica	Prupe.1G045900_v2.0.a1 Prupe.1G045900_v2.0.a1 Prupe.8G218100_v2.0.a1
pyrus_communis	pycom05g17830 pycom05g17870 pycom10g15490 pycom13g19410 pycom16g18790
rosa_chinensis	RchiOBHm_Chr4g0394771 RchiOBHm_Chr6g0287221
rosa_laevigata	RLG00000009663 RLG00000012517
rosa_multiflora	Rmu_sc0005297.1_g000024 Rmu_sc0005356.1_g000004
rosa_roxburghii	Rroxscaffold_5G00339810 Rroxscaffold_7G00181660
rosa_rugosa	Rorug03G0361600.1 Rorug06G0185900
rosa_samantha	Rh4AG055000 Rh4BG052900 Rh4CG059700 Rh4DG051400 Rh6AG297400 Rh6BG302800 Rh6CG307300 Rh6CG310700 Rh6DG294400
rosa_wichuraiana	Rw4G004390 Rw6G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	53
Acc36I	ACCTGC	1 cut(s)	1259
Acc65I	GGTACC	1 cut(s)	830
AccB1I	GGYRCC	1 cut(s)	830
AccB7I	CCANNNNNTGG	1 cut(s)	893
AciI	CCGC	5 cut(s)	33, 309, 612, 1070, 1208
AclI	AACGTT	1 cut(s)	1191
AclWI	GGATC	5 cut(s)	18, 161, 174, 1045, 1292
AcoI	YGGCCR	2 cut(s)	400, 586
AcsI	RAATTY	2 cut(s)	374, 1279
AcuI	CTGAAG	5 cut(s)	61, 86, 176, 387, 501
AcyI	GRCGYC	1 cut(s)	50
AdeI	CACNNNGTG	1 cut(s)	917
AfaI	GTAC	5 cut(s)	74, 704, 832, 1109, 1179
AfiI	CCNNNNNNNGG	7 cut(s)	290, 581, 595, 743, 773, 774, 893
AgsI	TTSAA	2 cut(s)	392, 1001
AjnI	CCWGG	5 cut(s)	289, 574, 913, 1033, 1201
AjuI	GAANNNNNNNTTGG	2 cut(s)	1270, 1302
AluBI	AGCT	8 cut(s)	22, 64, 395, 857, 939, 1016, 1295, 1310
AluI	AGCT	8 cut(s)	22, 64, 395, 857, 939, 1016, 1295, 1310
Alw21I	GWGCWC	5 cut(s)	722, 766, 922, 941, 1384
Alw26I	GTCTC	2 cut(s)	41, 111
Alw44I	GTGCAC	1 cut(s)	762
AlwI	GGATC	5 cut(s)	18, 161, 174, 1045, 1292
AlwNI	CAGNNNCTG	2 cut(s)	860, 1073
AoxI	GGCC	3 cut(s)	237, 400, 586
ApaI	GGGCCC	1 cut(s)	241
ApaLI	GTGCAC	1 cut(s)	762
ApeKI	GCWGC	8 cut(s)	256, 349, 857, 860, 863, 1013, 1067, 1402
ApoI	RAATTY	2 cut(s)	374, 1279
Asp718I	GGTACC	1 cut(s)	830
AspLEI	GCGC	2 cut(s)	1045, 1343
AspS9I	GGNCC	7 cut(s)	237, 238, 324, 851, 908, 1031, 1199
AsuHPI	GGTGA	1 cut(s)	1130
AvaII	GGWCC	5 cut(s)	324, 851, 908, 1031, 1199
AxyI	CCTNAGG	1 cut(s)	952
BaeGI	GKGCMC	2 cut(s)	241, 766
BalI	TGGCCA	1 cut(s)	402
BamHI	GGATCC	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	830
BanII	GRGCYC	3 cut(s)	241, 556, 941
BauI	CACGAG	1 cut(s)	450
Bbv12I	GWGCWC	5 cut(s)	722, 766, 922, 941, 1384
BbvI	GCAGC	7 cut(s)	268, 336, 844, 847, 850, 1025, 1079
BccI	CCATC	5 cut(s)	206, 215, 674, 1147, 1309
BceAI	ACGGC	2 cut(s)	103, 573
BciT130I	CCWGG	5 cut(s)	291, 576, 915, 1035, 1203
BciVI	GTATCC	1 cut(s)	1223
BcoDI	GTCTC	2 cut(s)	41, 111
BfaI	CTAG	3 cut(s)	789, 924, 1062
BfmI	CTRYAG	1 cut(s)	1017
BfoI	RGCGCY	1 cut(s)	1344
BfuAI	ACCTGC	1 cut(s)	1259
BfuI	GTATCC	1 cut(s)	1223
BisI	GCNGC	9 cut(s)	257, 350, 858, 861, 864, 1014, 1068, 1071, 1403
BlsI	GCNGC	9 cut(s)	258, 351, 859, 862, 865, 1015, 1069, 1072, 1404
BmcAI	AGTACT	1 cut(s)	74
Bme1390I	CCNGG	5 cut(s)	291, 576, 915, 1035, 1203
Bme18I	GGWCC	5 cut(s)	324, 851, 908, 1031, 1199
BmgT120I	GGNCC	7 cut(s)	237, 238, 324, 851, 908, 1031, 1199
BmiI	GGNNCC	3 cut(s)	168, 239, 832
BmrFI	CCNGG	5 cut(s)	291, 576, 915, 1035, 1203
BmrI	ACTGGG	1 cut(s)	762
BmsI	GCATC	6 cut(s)	475, 556, 632, 662, 1111, 1133
BmuI	ACTGGG	1 cut(s)	762
BpmI	CTGGAG	1 cut(s)	744
Bpu10I	CCTNAGC	1 cut(s)	1383
BpuEI	CTTGAG	2 cut(s)	229, 1071
Bsa29I	ATCGAT	1 cut(s)	210
BsaBI	GATNNNNATC	2 cut(s)	9, 570
BsaHI	GRCGYC	1 cut(s)	50
BsaJI	CCNNGG	3 cut(s)	594, 640, 989
Bsc4I	CCNNNNNNNGG	7 cut(s)	290, 581, 595, 743, 773, 774, 893
Bse1I	ACTGG	4 cut(s)	445, 727, 768, 844
Bse21I	CCTNAGG	1 cut(s)	952
Bse8I	GATNNNNATC	2 cut(s)	9, 570
BseBI	CCWGG	5 cut(s)	291, 576, 915, 1035, 1203
BseCI	ATCGAT	1 cut(s)	210
BseDI	CCNNGG	3 cut(s)	594, 640, 989
BseGI	GGATG	1 cut(s)	1124
BseJI	GATNNNNATC	2 cut(s)	9, 570
BseLI	CCNNNNNNNGG	7 cut(s)	290, 581, 595, 743, 773, 774, 893
BseMII	CTCAG	3 cut(s)	728, 966, 1397
BseNI	ACTGG	4 cut(s)	445, 727, 768, 844
BseRI	GAGGAG	1 cut(s)	266
BseSI	GKGCMC	2 cut(s)	241, 766
BseXI	GCAGC	7 cut(s)	268, 336, 844, 847, 850, 1025, 1079
BseYI	CCCAGC	2 cut(s)	1073, 1398
BsgI	GTGCAG	3 cut(s)	1032, 1086, 1173
BshFI	GGCC	3 cut(s)	239, 402, 588
BshNI	GGYRCC	1 cut(s)	830
BshVI	ATCGAT	1 cut(s)	210
BsiHKAI	GWGCWC	5 cut(s)	722, 766, 922, 941, 1384
BslI	CCNNNNNNNGG	7 cut(s)	290, 581, 595, 743, 773, 774, 893
BsmAI	GTCTC	2 cut(s)	41, 111
BsmBI	CGTCTC	1 cut(s)	41
BsnI	GGCC	3 cut(s)	239, 402, 588
Bsp120I	GGGCCC	1 cut(s)	237
Bsp1286I	GDGCHC	7 cut(s)	241, 556, 722, 766, 922, 941, 1384
Bsp143I	GATC	6 cut(s)	10, 123, 166, 272, 1037, 1297
BspACI	CCGC	5 cut(s)	33, 309, 612, 1070, 1208
BspANI	GGCC	3 cut(s)	239, 402, 588
BspCNI	CTCAG	3 cut(s)	727, 965, 1396
BspDI	ATCGAT	1 cut(s)	210
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	3 cut(s)	168, 239, 832
BspMI	ACCTGC	1 cut(s)	1259
BspPI	GGATC	5 cut(s)	18, 161, 174, 1045, 1292
BspQI	GCTCTTC	1 cut(s)	561
BspT107I	GGYRCC	1 cut(s)	830
BsrI	ACTGG	4 cut(s)	445, 727, 768, 844
BssECI	CCNNGG	3 cut(s)	594, 640, 989
BssMI	GATC	6 cut(s)	10, 123, 166, 272, 1037, 1297
BssNI	GRCGYC	1 cut(s)	50
BssSI	CACGAG	1 cut(s)	450
BssT1I	CCWWGG	3 cut(s)	594, 640, 989
Bst2BI	CACGAG	1 cut(s)	450
Bst2UI	CCWGG	5 cut(s)	291, 576, 915, 1035, 1203
Bst4CI	ACNGT	3 cut(s)	106, 223, 1112
Bst6I	CTCTTC	1 cut(s)	561
BstACI	GRCGYC	1 cut(s)	50
BstC8I	GCNNGC	2 cut(s)	20, 1047
BstDEI	CTNAG	4 cut(s)	231, 714, 952, 1383
BstEII	GGTNACC	1 cut(s)	635
BstF5I	GGATG	1 cut(s)	1124
BstH2I	RGCGCY	1 cut(s)	1344
BstHHI	GCGC	2 cut(s)	1045, 1343
BstKTI	GATC	6 cut(s)	13, 126, 169, 275, 1040, 1300
BstMAI	GTCTC	2 cut(s)	41, 111
BstMBI	GATC	6 cut(s)	10, 123, 166, 272, 1037, 1297
BstMWI	GCNNNNNNNGC	7 cut(s)	87, 236, 863, 890, 1151, 1340, 1394
BstNI	CCWGG	5 cut(s)	291, 576, 915, 1035, 1203
BstNSI	RCATGY	1 cut(s)	709
BstPI	GGTNACC	1 cut(s)	635
BstSCI	CCNGG	5 cut(s)	289, 574, 913, 1033, 1201
BstSFI	CTRYAG	1 cut(s)	1017
BstSLI	GKGCMC	2 cut(s)	241, 766
BstV1I	GCAGC	7 cut(s)	268, 336, 844, 847, 850, 1025, 1079
BstX2I	RGATCY	2 cut(s)	166, 1037
BstXI	CCANNNNNNTGG	2 cut(s)	440, 647
BstYI	RGATCY	2 cut(s)	166, 1037
Bsu15I	ATCGAT	1 cut(s)	210
Bsu36I	CCTNAGG	1 cut(s)	952
BsuI	GTATCC	1 cut(s)	1223
BsuRI	GGCC	3 cut(s)	239, 402, 588
BsuTUI	ATCGAT	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	1124
BtsI	GCAGTG	2 cut(s)	1015, 1384
BtsIMutI	CAGTG	5 cut(s)	477, 720, 1015, 1117, 1384
BveI	ACCTGC	1 cut(s)	1259
Cac8I	GCNNGC	2 cut(s)	20, 1047
CaiI	CAGNNNCTG	2 cut(s)	860, 1073
CciI	TCATGA	1 cut(s)	517
CfoI	GCGC	2 cut(s)	1045, 1343
Cfr13I	GGNCC	7 cut(s)	237, 238, 324, 851, 908, 1031, 1199
ClaI	ATCGAT	1 cut(s)	210
CsiI	ACCWGGT	1 cut(s)	913
Csp6I	GTAC	5 cut(s)	73, 703, 831, 1108, 1178
CspCI	CAANNNNNGTGG	4 cut(s)	559, 594, 1177, 1212
CviAII	CATG	5 cut(s)	404, 518, 706, 933, 1346
CviQI	GTAC	5 cut(s)	73, 703, 831, 1108, 1178
DdeI	CTNAG	4 cut(s)	231, 714, 952, 1383
DpnI	GATC	6 cut(s)	12, 125, 168, 274, 1039, 1299
DpnII	GATC	6 cut(s)	10, 123, 166, 272, 1037, 1297
DraIII	CACNNNGTG	1 cut(s)	917
EaeI	YGGCCR	2 cut(s)	400, 586
Eam1104I	CTCTTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	561
Ecl136II	GAGCTC	1 cut(s)	939
Eco130I	CCWWGG	3 cut(s)	594, 640, 989
Eco24I	GRGCYC	3 cut(s)	241, 556, 941
Eco47I	GGWCC	5 cut(s)	324, 851, 908, 1031, 1199
Eco53kI	GAGCTC	1 cut(s)	939
Eco57I	CTGAAG	5 cut(s)	61, 86, 176, 387, 501
Eco81I	CCTNAGG	1 cut(s)	952
Eco91I	GGTNACC	1 cut(s)	635
EcoICRI	GAGCTC	1 cut(s)	939
EcoO109I	RGGNCCY	2 cut(s)	237, 238
EcoO65I	GGTNACC	1 cut(s)	635
EcoRI	GAATTC	1 cut(s)	374
EcoRII	CCWGG	5 cut(s)	289, 574, 913, 1033, 1201
EcoT14I	CCWWGG	3 cut(s)	594, 640, 989
EcoT22I	ATGCAT	2 cut(s)	676, 1126
EcoT38I	GRGCYC	3 cut(s)	241, 556, 941
ErhI	CCWWGG	3 cut(s)	594, 640, 989
Esp3I	CGTCTC	1 cut(s)	41
FaeI	CATG	5 cut(s)	407, 521, 709, 936, 1349
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	5 cut(s)	403, 517, 705, 932, 1345
FauI	CCCGC	1 cut(s)	26
FauNDI	CATATG	1 cut(s)	676
Fnu4HI	GCNGC	9 cut(s)	257, 350, 858, 861, 864, 1014, 1068, 1071, 1403
FokI	GGATG	1 cut(s)	1111
FriOI	GRGCYC	3 cut(s)	241, 556, 941
Fsp4HI	GCNGC	9 cut(s)	257, 350, 858, 861, 864, 1014, 1068, 1071, 1403
FspBI	CTAG	3 cut(s)	789, 924, 1062
GlaI	GCGC	2 cut(s)	1044, 1342
GluI	GCNGC	9 cut(s)	257, 350, 858, 861, 864, 1014, 1068, 1071, 1403
GsaI	CCCAGC	2 cut(s)	1077, 1402
GsuI	CTGGAG	1 cut(s)	744
HaeII	RGCGCY	1 cut(s)	1344
HaeIII	GGCC	3 cut(s)	239, 402, 588
HhaI	GCGC	2 cut(s)	1045, 1343
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	5 cut(s)	407, 521, 709, 936, 1349
Hin6I	GCGC	2 cut(s)	1043, 1341
HinP1I	GCGC	2 cut(s)	1043, 1341
HindIII	AAGCTT	3 cut(s)	20, 393, 1308
HinfI	GANTC	3 cut(s)	5, 692, 1253
HphI	GGTGA	1 cut(s)	1130
Hpy166II	GTNNAC	3 cut(s)	764, 911, 1178
Hpy188I	TCNGA	3 cut(s)	10, 55, 717
Hpy188III	TCNNGA	7 cut(s)	179, 194, 246, 276, 518, 954, 1314
Hpy8I	GTNNAC	3 cut(s)	764, 911, 1178
Hpy99I	CGWCG	3 cut(s)	55, 95, 158
HpyAV	CCTTC	2 cut(s)	61, 795
HpyCH4III	ACNGT	3 cut(s)	106, 223, 1112
HpyCH4IV	ACGT	3 cut(s)	50, 93, 1191
HpyF10VI	GCNNNNNNNGC	7 cut(s)	87, 236, 863, 890, 1151, 1340, 1394
HpyF3I	CTNAG	4 cut(s)	231, 714, 952, 1383
HpySE526I	ACGT	3 cut(s)	50, 93, 1191
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	5 cut(s)	407, 521, 709, 936, 1349
HspAI	GCGC	2 cut(s)	1043, 1341
KpnI	GGTACC	1 cut(s)	834
Kzo9I	GATC	6 cut(s)	10, 123, 166, 272, 1037, 1297
LguI	GCTCTTC	1 cut(s)	561
LmnI	GCTCC	7 cut(s)	253, 787, 925, 936, 944, 991, 1210
Lsp1109I	GCAGC	7 cut(s)	268, 336, 844, 847, 850, 1025, 1079
LweI	GCATC	6 cut(s)	475, 556, 632, 662, 1111, 1133
MabI	ACCWGGT	1 cut(s)	913
MaeI	CTAG	3 cut(s)	789, 924, 1062
MaeII	ACGT	3 cut(s)	50, 93, 1191
MaeIII	GTNAC	2 cut(s)	406, 635
MalI	GATC	6 cut(s)	12, 125, 168, 274, 1039, 1299
MboI	GATC	6 cut(s)	10, 123, 166, 272, 1037, 1297
MboII	GAAGA	7 cut(s)	182, 343, 380, 383, 494, 548, 741
MflI	RGATCY	2 cut(s)	166, 1037
MhlI	GDGCHC	7 cut(s)	241, 556, 722, 766, 922, 941, 1384
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	4 cut(s)	82, 374, 1279, 1318
MluNI	TGGCCA	1 cut(s)	402
MlyI	GAGTC	2 cut(s)	686, 1247
MmeI	TCCRAC	4 cut(s)	33, 720, 1138, 1268
Mox20I	TGGCCA	1 cut(s)	402
Mph1103I	ATGCAT	2 cut(s)	676, 1126
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	1 cut(s)	524
Msp20I	TGGCCA	1 cut(s)	402
MspA1I	CMGCKG	2 cut(s)	857, 1070
MspR9I	CCNGG	5 cut(s)	291, 576, 915, 1035, 1203
MvaI	CCWGG	5 cut(s)	291, 576, 915, 1035, 1203
MwoI	GCNNNNNNNGC	7 cut(s)	87, 236, 863, 890, 1151, 1340, 1394
NdeI	CATATG	1 cut(s)	676
NdeII	GATC	6 cut(s)	10, 123, 166, 272, 1037, 1297
NlaIII	CATG	5 cut(s)	407, 521, 709, 936, 1349
NlaIV	GGNNCC	3 cut(s)	168, 239, 832
NsiI	ATGCAT	2 cut(s)	676, 1126
NspI	RCATGY	1 cut(s)	709
PagI	TCATGA	1 cut(s)	517
PciSI	GCTCTTC	1 cut(s)	561
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	5
PflMI	CCANNNNNTGG	1 cut(s)	893
PfoI	TCCNGGA	1 cut(s)	1033
PkrI	GCNGC	9 cut(s)	258, 351, 859, 862, 865, 1015, 1069, 1072, 1404
PleI	GAGTC	2 cut(s)	686, 1247
PpsI	GAGTC	2 cut(s)	686, 1247
Psp124BI	GAGCTC	1 cut(s)	941
Psp1406I	AACGTT	1 cut(s)	1191
Psp6I	CCWGG	5 cut(s)	289, 574, 913, 1033, 1201
PspEI	GGTNACC	1 cut(s)	635
PspFI	CCCAGC	2 cut(s)	1073, 1398
PspGI	CCWGG	5 cut(s)	289, 574, 913, 1033, 1201
PspN4I	GGNNCC	3 cut(s)	168, 239, 832
PspOMI	GGGCCC	1 cut(s)	237
PspPI	GGNCC	7 cut(s)	237, 238, 324, 851, 908, 1031, 1199
PstNI	CAGNNNCTG	2 cut(s)	860, 1073
PsuI	RGATCY	2 cut(s)	166, 1037
PvuII	CAGCTG	1 cut(s)	857
RsaI	GTAC	5 cut(s)	74, 704, 832, 1109, 1179
RsaNI	GTAC	5 cut(s)	73, 703, 831, 1108, 1178
SacI	GAGCTC	1 cut(s)	941
SapI	GCTCTTC	1 cut(s)	561
SaqAI	TTAA	1 cut(s)	524
SatI	GCNGC	9 cut(s)	257, 350, 858, 861, 864, 1014, 1068, 1071, 1403
Sau3AI	GATC	6 cut(s)	10, 123, 166, 272, 1037, 1297
Sau96I	GGNCC	7 cut(s)	237, 238, 324, 851, 908, 1031, 1199
ScaI	AGTACT	1 cut(s)	74
SchI	GAGTC	2 cut(s)	686, 1247
ScrFI	CCNGG	5 cut(s)	291, 576, 915, 1035, 1203
SduI	GDGCHC	7 cut(s)	241, 556, 722, 766, 922, 941, 1384
SexAI	ACCWGGT	1 cut(s)	913
SfaNI	GCATC	6 cut(s)	475, 556, 632, 662, 1111, 1133
SfcI	CTRYAG	1 cut(s)	1017
SinI	GGWCC	5 cut(s)	324, 851, 908, 1031, 1199
SmlI	CTYRAG	2 cut(s)	244, 1086
SmoI	CTYRAG	2 cut(s)	244, 1086
Sse9I	AATT	4 cut(s)	82, 374, 1279, 1318
SsiI	CCGC	5 cut(s)	33, 309, 612, 1070, 1208
SspI	AATATT	1 cut(s)	386
SspMI	CTAG	3 cut(s)	789, 924, 1062
SstI	GAGCTC	1 cut(s)	941
StyD4I	CCNGG	5 cut(s)	289, 574, 913, 1033, 1201
StyI	CCWWGG	3 cut(s)	594, 640, 989
TaaI	ACNGT	3 cut(s)	106, 223, 1112
TaiI	ACGT	3 cut(s)	53, 96, 1194
TaqI	TCGA	2 cut(s)	210, 685
TasI	AATT	4 cut(s)	82, 374, 1279, 1318
TatI	WGTACW	1 cut(s)	72
TauI	GCSGC	1 cut(s)	1073
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	524
Tru9I	TTAA	1 cut(s)	524
TscAI	CASTG	5 cut(s)	484, 727, 1015, 1117, 1384
TseI	GCWGC	8 cut(s)	256, 349, 857, 860, 863, 1013, 1067, 1402
TspDTI	ATGAA	4 cut(s)	16, 459, 506, 921
TspGWI	ACGGA	2 cut(s)	368, 831
TspRI	CASTG	5 cut(s)	484, 727, 1015, 1117, 1384
Van91I	CCANNNNNTGG	1 cut(s)	893
VneI	GTGCAC	1 cut(s)	762
VpaK11BI	GGWCC	5 cut(s)	324, 851, 908, 1031, 1199
XapI	RAATTY	2 cut(s)	374, 1279
XceI	RCATGY	1 cut(s)	709
XspI	CTAG	3 cut(s)	789, 924, 1062
ZraI	GACGTC	1 cut(s)	51
ZrmI	AGTACT	1 cut(s)	74
Zsp2I	ATGCAT	2 cut(s)	676, 1126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.