Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002787

Physical Location & Seq

Genomic Coordinates Reverse (-)

22657649 .. 22660211

Gene Structure 2563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1224500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGCAGCGAATCTCATCCGTCCAAACGCGTACTTCCATCTCCCAAGTCCCAAACTTCCCCCAATCTCGAAGCATACATACACACTGGAACCCCGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGTCGGCCACAAACCCTTCCTCTCTCTCCCAAATCCCAAACCCCCAAAATCCAAAAACACACCTCCGAAATTACATAAAGATCGAAGCTTTCATTCTCACACGCAGTCAGTGAGAAGGAGAGGCAGTGAAGTGAAAACCCGCATGGATTCAGATCAGGGAAAGCTTTTTATTGGTGGGATTTCATGGGAGACCTCGGAGGATAAGCTTAAAGAGTACTTCAGCAACTACGGCGACGTTTTGCAGACGGTGGTCATGAGGGACAAGGTATCCGGCCGCCCCAGGGGTTTTGGGTTTGTGGTTTTTGTAGATCCTGCTGTTCTCGATAGGGTTCTTCAGGATAAGCACACCATCGATGGTAGAACGGTTGAGGCTAAGAGGGCCCTATCAAGAGAGGAGCAGCAAACCACTGGAAGAGTTGGAAATGCTAATCCTACTAGAAGTGCTGGAAGTGGGGGAAATGTTAGGACCAAGAAGATATTTGTTGGAGGGTTGCCCCCCACTCTTAGTGAGGAAGGATTCCGTGAGTATTTTGAATCTTTTGGCCATGTAACTGATGTAGTAGTAATGTATGACCAAAGTACTGGACGTCCTCGTGGTTTTGGGTTTATTTCATTTGACACCGAAGAAGCTGTTGATAGGGTTTTGCACAAGACATTTCATGATTTAAATGGTAAGCAAGTGGAAGTTAAGCGGGCTCTTCCCAAAGATGCCAACCCCGGTGGGGGTAGCCGTAGCATGGGTGGCGGTCAAGGTGGCGGCGGTGCTGCTGGAGGTGGTTATCAAGGCTATGGGGTACATGCAATCCCAGAGTGCTGGAGGTGGGTTTCCACCTTATGGTTCTTCTGGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0022414 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0047484 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0080134 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901000 GO:1901360 GO:1901363 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

327

Amino Acids

36.07

Weight (kDa)

9.89

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	98 - 165	1.4e-14	RNA recognition motif
RRM_PARP14_3	PF23085	199 - 273	1.9e-06	PARP14, third RRM domain
RRM_7	PF16367	200 - 268	1.5e-06	RNA recognition motif
RRM_1	PF00076	202 - 260	5.2e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14300 AT4G14300
fragaria_vesca	FvH4_2g20810 FvH4_4g04320 FvH4_4g04320 FvH4_4g04320 FvH4_4g04320
malus_domestica	MD05G1191700.v1.1 MD13G1219200.v1.1 MD16G1224500.v1.1
prunus_persica	Prupe.1G045900_v2.0.a1 Prupe.1G045900_v2.0.a1 Prupe.8G218100_v2.0.a1
pyrus_communis	pycom05g17830 pycom05g17870 pycom10g15490 pycom13g19410 pycom16g18790
rosa_chinensis	RchiOBHm_Chr4g0394771 RchiOBHm_Chr6g0287221
rosa_laevigata	RLG00000009663 RLG00000012517
rosa_multiflora	Rmu_sc0005297.1_g000024 Rmu_sc0005356.1_g000004
rosa_roxburghii	Rroxscaffold_5G00339810 Rroxscaffold_7G00181660
rosa_rugosa	Rorug03G0361600.1 Rorug06G0185900
rosa_samantha	Rh4AG055000 Rh4BG052900 Rh4CG059700 Rh4DG051400 Rh6AG297400 Rh6BG302800 Rh6CG307300 Rh6CG310700 Rh6DG294400
rosa_wichuraiana	Rw4G004390 Rw6G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	718
AccB7I	CCANNNNNTGG	1 cut(s)	963
AccII	CGCG	1 cut(s)	28
AciI	CCGC	6 cut(s)	268, 403, 820, 873, 885, 888
AclWI	GGATC	1 cut(s)	431
AcoI	YGGCCR	3 cut(s)	133, 400, 670
AcuI	CTGAAG	2 cut(s)	331, 446
AcyI	GRCGYC	1 cut(s)	715
AfaI	GTAC	4 cut(s)	31, 344, 709, 924
AfiI	CCNNNNNNNGG	5 cut(s)	409, 850, 851, 865, 963
AflIII	ACRYGT	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	662
AjnI	CCWGG	1 cut(s)	407
AluBI	AGCT	4 cut(s)	216, 292, 334, 758
AluI	AGCT	4 cut(s)	216, 292, 334, 758
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	1 cut(s)	431
AoxI	GGCC	4 cut(s)	133, 400, 507, 670
ApaI	GGGCCC	1 cut(s)	511
ApeKI	GCWGC	3 cut(s)	4, 526, 893
AspS9I	GGNCC	3 cut(s)	507, 508, 594
AsuC2I	CCSGG	1 cut(s)	846
AvaII	GGWCC	1 cut(s)	594
BaeGI	GKGCMC	1 cut(s)	511
BalI	TGGCCA	1 cut(s)	672
BanII	GRGCYC	2 cut(s)	511, 826
BarI	GAAGNNNNNNTAC	2 cut(s)	61, 93
BauI	CACGAG	1 cut(s)	720
BbvI	GCAGC	3 cut(s)	16, 538, 880
BccI	CCATC	3 cut(s)	44, 476, 485
BceAI	ACGGC	2 cut(s)	373, 843
BciT130I	CCWGG	1 cut(s)	409
BciVI	GTATCC	1 cut(s)	406
BcnI	CCSGG	1 cut(s)	846
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	2 cut(s)	128, 564
BfuI	GTATCC	1 cut(s)	406
BisI	GCNGC	5 cut(s)	5, 403, 527, 886, 894
BlsI	GCNGC	5 cut(s)	6, 404, 528, 887, 895
BmcAI	AGTACT	2 cut(s)	344, 709
Bme1390I	CCNGG	2 cut(s)	409, 846
Bme18I	GGWCC	1 cut(s)	594
BmgT120I	GGNCC	3 cut(s)	507, 508, 594
BmiI	GGNNCC	2 cut(s)	89, 509
BmrFI	CCNGG	2 cut(s)	409, 846
BmsI	GCATC	1 cut(s)	826
BoxI	GACNNNNGTC	1 cut(s)	377
BpmI	CTGGAG	2 cut(s)	918, 964
BpuMI	CCSGG	1 cut(s)	846
Bsa29I	ATCGAT	1 cut(s)	480
BsaBI	GATNNNNATC	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	715
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	4 cut(s)	321, 407, 408, 844
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	5 cut(s)	409, 850, 851, 865, 963
Bse1I	ACTGG	3 cut(s)	89, 541, 715
Bse8I	GATNNNNATC	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	409
BseCI	ATCGAT	1 cut(s)	480
BseDI	CCNNGG	4 cut(s)	321, 407, 408, 844
BseGI	GGATG	1 cut(s)	14
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	5 cut(s)	409, 850, 851, 865, 963
BseNI	ACTGG	3 cut(s)	89, 541, 715
BseRI	GAGGAG	1 cut(s)	536
BseSI	GKGCMC	1 cut(s)	511
BseX3I	CGGCCG	1 cut(s)	400
BseXI	GCAGC	3 cut(s)	16, 538, 880
Bsh1236I	CGCG	1 cut(s)	28
Bsh1285I	CGRYCG	1 cut(s)	403
BshFI	GGCC	4 cut(s)	135, 402, 509, 672
BshVI	ATCGAT	1 cut(s)	480
BsiEI	CGRYCG	1 cut(s)	403
BsiSI	CCGG	2 cut(s)	399, 846
BslFI	GGGAC	2 cut(s)	32, 401
BslI	CCNNNNNNNGG	5 cut(s)	409, 850, 851, 865, 963
BsmAI	GTCTC	1 cut(s)	311
BsmFI	GGGAC	2 cut(s)	32, 401
BsnI	GGCC	4 cut(s)	135, 402, 509, 672
Bso31I	GGTCTC	1 cut(s)	311
Bsp120I	GGGCCC	1 cut(s)	507
Bsp1286I	GDGCHC	2 cut(s)	511, 826
Bsp143I	GATC	3 cut(s)	208, 280, 436
BspACI	CCGC	6 cut(s)	268, 403, 820, 873, 885, 888
BspANI	GGCC	4 cut(s)	135, 402, 509, 672
BspDI	ATCGAT	1 cut(s)	480
BspFNI	CGCG	1 cut(s)	28
BspHI	TCATGA	2 cut(s)	381, 787
BspLI	GGNNCC	2 cut(s)	89, 509
BspPI	GGATC	1 cut(s)	431
BspQI	GCTCTTC	1 cut(s)	831
BspTNI	GGTCTC	1 cut(s)	311
BsrI	ACTGG	3 cut(s)	89, 541, 715
BssECI	CCNNGG	4 cut(s)	321, 407, 408, 844
BssMI	GATC	3 cut(s)	208, 280, 436
BssNI	GRCGYC	1 cut(s)	715
BssSI	CACGAG	1 cut(s)	720
Bst2BI	CACGAG	1 cut(s)	720
Bst2UI	CCWGG	1 cut(s)	409
Bst4CI	ACNGT	2 cut(s)	376, 493
Bst6I	CTCTTC	2 cut(s)	535, 831
BstACI	GRCGYC	1 cut(s)	715
BstC8I	GCNNGC	1 cut(s)	822
BstDEI	CTNAG	2 cut(s)	501, 632
BstF5I	GGATG	1 cut(s)	14
BstFNI	CGCG	1 cut(s)	28
BstKTI	GATC	3 cut(s)	211, 283, 439
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	3 cut(s)	208, 280, 436
BstMCI	CGRYCG	1 cut(s)	403
BstMWI	GCNNNNNNNGC	3 cut(s)	357, 506, 870
BstNI	CCWGG	1 cut(s)	409
BstNSI	RCATGY	1 cut(s)	929
BstPAI	GACNNNNGTC	1 cut(s)	377
BstSCI	CCNGG	2 cut(s)	407, 844
BstSLI	GKGCMC	1 cut(s)	511
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	3 cut(s)	16, 538, 880
BstX2I	RGATCY	1 cut(s)	436
BstXI	CCANNNNNNTGG	2 cut(s)	710, 942
BstYI	RGATCY	1 cut(s)	436
BstZI	CGGCCG	1 cut(s)	400
Bsu15I	ATCGAT	1 cut(s)	480
BsuI	GTATCC	1 cut(s)	406
BsuRI	GGCC	4 cut(s)	135, 402, 509, 672
BsuTUI	ATCGAT	1 cut(s)	480
BtsCI	GGATG	1 cut(s)	14
BtsI	GCAGTG	1 cut(s)	259
BtsIMutI	CAGTG	4 cut(s)	82, 243, 259, 534
Cac8I	GCNNGC	1 cut(s)	822
CciI	TCATGA	2 cut(s)	381, 787
Cfr13I	GGNCC	3 cut(s)	507, 508, 594
ClaI	ATCGAT	1 cut(s)	480
Csp6I	GTAC	4 cut(s)	30, 343, 708, 923
CspCI	CAANNNNNGTGG	2 cut(s)	829, 864
CviAII	CATG	7 cut(s)	271, 312, 382, 674, 788, 865, 926
CviQI	GTAC	4 cut(s)	30, 343, 708, 923
DdeI	CTNAG	2 cut(s)	501, 632
DpnI	GATC	3 cut(s)	210, 282, 438
DpnII	GATC	3 cut(s)	208, 280, 436
DraI	TTTAAA	1 cut(s)	795
EaeI	YGGCCR	3 cut(s)	133, 400, 670
EagI	CGGCCG	1 cut(s)	400
Eam1104I	CTCTTC	2 cut(s)	535, 831
EarI	CTCTTC	2 cut(s)	535, 831
EclXI	CGGCCG	1 cut(s)	400
Eco24I	GRGCYC	2 cut(s)	511, 826
Eco31I	GGTCTC	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	594
Eco52I	CGGCCG	1 cut(s)	400
Eco57I	CTGAAG	2 cut(s)	331, 446
EcoO109I	RGGNCCY	2 cut(s)	507, 508
EcoRII	CCWGG	1 cut(s)	407
EcoT38I	GRGCYC	2 cut(s)	511, 826
FaeI	CATG	7 cut(s)	274, 315, 385, 677, 791, 868, 929
FaqI	GGGAC	2 cut(s)	32, 401
FatI	CATG	7 cut(s)	270, 311, 381, 673, 787, 864, 925
FauI	CCCGC	2 cut(s)	275, 813
Fnu4HI	GCNGC	5 cut(s)	5, 403, 527, 886, 894
FriOI	GRGCYC	2 cut(s)	511, 826
Fsp4HI	GCNGC	5 cut(s)	5, 403, 527, 886, 894
FspBI	CTAG	2 cut(s)	128, 564
GluI	GCNGC	5 cut(s)	5, 403, 527, 886, 894
GsuI	CTGGAG	2 cut(s)	918, 964
HaeIII	GGCC	4 cut(s)	135, 402, 509, 672
HapII	CCGG	2 cut(s)	399, 846
Hin1I	GRCGYC	1 cut(s)	715
Hin1II	CATG	7 cut(s)	274, 315, 385, 677, 791, 868, 929
HindIII	AAGCTT	3 cut(s)	214, 290, 332
HinfI	GANTC	4 cut(s)	9, 275, 645, 662
HpaII	CCGG	2 cut(s)	399, 846
Hpy188I	TCNGA	3 cut(s)	195, 280, 325
Hpy188III	TCNNGA	6 cut(s)	66, 382, 449, 464, 516, 788
Hpy99I	CGWCG	1 cut(s)	365
HpyAV	CCTTC	3 cut(s)	154, 237, 635
HpyCH4III	ACNGT	2 cut(s)	376, 493
HpyCH4IV	ACGT	2 cut(s)	363, 715
HpyCH4V	TGCA	4 cut(s)	4, 370, 775, 929
HpyF10VI	GCNNNNNNNGC	3 cut(s)	357, 506, 870
HpyF3I	CTNAG	2 cut(s)	501, 632
HpySE526I	ACGT	2 cut(s)	363, 715
Hsp92I	GRCGYC	1 cut(s)	715
Hsp92II	CATG	7 cut(s)	274, 315, 385, 677, 791, 868, 929
Kzo9I	GATC	3 cut(s)	208, 280, 436
LguI	GCTCTTC	1 cut(s)	831
LmnI	GCTCC	1 cut(s)	523
Lsp1109I	GCAGC	3 cut(s)	16, 538, 880
LweI	GCATC	1 cut(s)	826
MaeI	CTAG	2 cut(s)	128, 564
MaeII	ACGT	2 cut(s)	363, 715
MaeIII	GTNAC	1 cut(s)	676
MalI	GATC	3 cut(s)	210, 282, 438
MboI	GATC	3 cut(s)	208, 280, 436
MboII	GAAGA	6 cut(s)	452, 552, 613, 764, 818, 961
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	2 cut(s)	511, 826
MlsI	TGGCCA	1 cut(s)	672
MluCI	AATT	1 cut(s)	197
MluI	ACGCGT	1 cut(s)	26
MluNI	TGGCCA	1 cut(s)	672
MmeI	TCCRAC	2 cut(s)	526, 592
Mox20I	TGGCCA	1 cut(s)	672
MscI	TGGCCA	1 cut(s)	672
MseI	TTAA	3 cut(s)	336, 794, 816
Msp20I	TGGCCA	1 cut(s)	672
MspI	CCGG	2 cut(s)	399, 846
MspR9I	CCNGG	2 cut(s)	409, 846
MvaI	CCWGG	1 cut(s)	409
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	3 cut(s)	357, 506, 870
NciI	CCSGG	1 cut(s)	846
NdeII	GATC	3 cut(s)	208, 280, 436
NlaIII	CATG	7 cut(s)	274, 315, 385, 677, 791, 868, 929
NlaIV	GGNNCC	2 cut(s)	89, 509
NspI	RCATGY	1 cut(s)	929
PagI	TCATGA	2 cut(s)	381, 787
PasI	CCCWGGG	1 cut(s)	408
PciSI	GCTCTTC	1 cut(s)	831
PfeI	GAWTC	4 cut(s)	9, 275, 645, 662
PflMI	CCANNNNNTGG	1 cut(s)	963
PkrI	GCNGC	5 cut(s)	6, 404, 528, 887, 895
PshAI	GACNNNNGTC	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	407
PspN4I	GGNNCC	2 cut(s)	89, 509
PspOMI	GGGCCC	1 cut(s)	507
PspPI	GGNCC	3 cut(s)	507, 508, 594
PsuI	RGATCY	1 cut(s)	436
RsaI	GTAC	4 cut(s)	31, 344, 709, 924
RsaNI	GTAC	4 cut(s)	30, 343, 708, 923
SapI	GCTCTTC	1 cut(s)	831
SaqAI	TTAA	3 cut(s)	336, 794, 816
SatI	GCNGC	5 cut(s)	5, 403, 527, 886, 894
Sau3AI	GATC	3 cut(s)	208, 280, 436
Sau96I	GGNCC	3 cut(s)	507, 508, 594
ScaI	AGTACT	2 cut(s)	344, 709
ScrFI	CCNGG	2 cut(s)	409, 846
SduI	GDGCHC	2 cut(s)	511, 826
SfaNI	GCATC	1 cut(s)	826
SinI	GGWCC	1 cut(s)	594
SmiI	ATTTAAAT	1 cut(s)	795
Sse9I	AATT	1 cut(s)	197
SsiI	CCGC	6 cut(s)	268, 403, 820, 873, 885, 888
SspMI	CTAG	2 cut(s)	128, 564
StyD4I	CCNGG	2 cut(s)	407, 844
SwaI	ATTTAAAT	1 cut(s)	795
TaaI	ACNGT	2 cut(s)	376, 493
TaiI	ACGT	2 cut(s)	366, 718
TaqI	TCGA	4 cut(s)	67, 211, 450, 480
TasI	AATT	1 cut(s)	197
TatI	WGTACW	2 cut(s)	342, 707
TauI	GCSGC	2 cut(s)	405, 888
TfiI	GAWTC	4 cut(s)	9, 275, 645, 662
Tru1I	TTAA	3 cut(s)	336, 794, 816
Tru9I	TTAA	3 cut(s)	336, 794, 816
TscAI	CASTG	4 cut(s)	89, 243, 259, 541
TseI	GCWGC	3 cut(s)	4, 526, 893
TspDTI	ATGAA	4 cut(s)	209, 300, 729, 776
TspGWI	ACGGA	2 cut(s)	7, 638
TspRI	CASTG	4 cut(s)	89, 243, 259, 541
Van91I	CCANNNNNTGG	1 cut(s)	963
VpaK11BI	GGWCC	1 cut(s)	594
XceI	RCATGY	1 cut(s)	929
XspI	CTAG	2 cut(s)	128, 564
ZraI	GACGTC	1 cut(s)	716
ZrmI	AGTACT	2 cut(s)	344, 709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.