Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002787

Physical Location & Seq

Genomic Coordinates Reverse (-)

21181260 .. 21184438

Gene Structure 3179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1219200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGATTCCGATCGGGGGAAGCTTTTTATTGGTGGGATTTCATGGGAGACCTCGGAGGATAAGCTTAAAGAGTACTTCAGCAACTACGGCGATGTTTTGCAGACTGTGGTCATGAGGGATAAGATCTCCGGCCGCCCCAGGGGTTTTGGGTTTGTGGTTTTTGTAGATCCTGCTGTTCTCGATAGGGTTCTTCAGGATCAGCACACCATCGATGGTAGAACGGTTGAGGCTAAGAGAGCCCTATCAAGAGAGGAGCAGCAAACCACCGGGAGAGTTGGAAATGCTAATCCTACTAGAAGTGCTGGAAGTGGGGGAAATGTTAGGACCAAGAAGATATTTGTTGGAGGGTTGCCCCCCACTCTTAGTGAGGAAGGATTCCGTGAATATTTTGAAGCTTATGGCCATGTAACTGATGTAGTAGTAATGTATGACCAAAGTACTGGACGTCCTCGTGGGTTTGGGTTTATTTCATTTGACACTGAAGAAGCTGTTGATAGGGTTTTGCACAAGACATTTCATGATTTAAATGGGAAGCAAGTGGAAGTTAAGCGGGCTCTTCCTAAAGATGCCAACCCTGGTGGGGGTAGCCGTAGCATGGGTGGTGGTCAAGGTGGCGGAGGTGCTGCTGGAGGTGGTTATCAAGGCTATGGGGCATCTGCTGGTAACCCAAATTCATATGATGGTCGAATGGACTCCAACAGGTACATGCAATCGCAGAGTACTGGAGGTGGGTTTCCACCTTATGGTTCTTCTGGGTATAGTGCACCCGGTTACGGGTATGGTCCTACCAGTAATGGAATTGGCTATGGCAGTTATGGAAGTTATGGAGGTACTAATACCGGTTATGGAGGTCCAGCAGCTGCTGCATACGGAAACCCTAATGCCGCAAATGCTGCTTATGCTAGTGGTCCACCAGGTGCCCCTAGAAGTGCATGGAGCTCTCAACCTCCCTCTGGATATGGTGCTATGGGTTATGGGAATACTGCTCCTTGGGGTGTTTCAAGTGGCAGTGCAGGTACAGGAAGTGGTGGCCCCGGTTCTGCACCTGCTGGTCAATCACCTAGTGCAGTGGCTGGGTATGGAACTCAAGGTTATGGTTATGGTGGGTACAGTGCAACAGATGCATCCTATGCAAATCCATCTGGATACGGTGCTGTTGGAGGACGTTCGGGGAGTGTCCCAAATAACAATGTTGGTGCTCCAGGTGGGGAGCAAGGTAATGCTGGTGGCTACGGTGGAAGTGGCTATGGCGATTCAAATGGAAATGCAGGTTATGGAAATGCTGGTTGGAGATCTGATCCATCACAAGCTTCTGGAAATTATGGTGGTCCGGCAAATGGTGGACAAGTTGGTTATGGTGGTGGATATGGCAGTGCTCAGGCACGGCAATCCCAGCAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0022414 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0047484 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0080134 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901000 GO:1901360 GO:1901363 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

468

Amino Acids

47.16

Weight (kDa)

6.92

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	8 - 75	5.8e-14	RNA recognition motif
RRM_PARP14_3	PF23085	109 - 183	7.6e-06	PARP14, third RRM domain
RRM_7	PF16367	110 - 178	2.7e-06	RNA recognition motif
RRM_1	PF00076	112 - 170	1.3e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14300 AT4G14300
fragaria_vesca	FvH4_2g20810 FvH4_4g04320 FvH4_4g04320 FvH4_4g04320 FvH4_4g04320
malus_domestica	MD05G1191700.v1.1 MD13G1219200.v1.1 MD16G1224500.v1.1
prunus_persica	Prupe.1G045900_v2.0.a1 Prupe.1G045900_v2.0.a1 Prupe.8G218100_v2.0.a1
pyrus_communis	pycom05g17830 pycom05g17870 pycom10g15490 pycom13g19410 pycom16g18790
rosa_chinensis	RchiOBHm_Chr4g0394771 RchiOBHm_Chr6g0287221
rosa_laevigata	RLG00000009663 RLG00000012517
rosa_multiflora	Rmu_sc0005297.1_g000024 Rmu_sc0005356.1_g000004
rosa_roxburghii	Rroxscaffold_5G00339810 Rroxscaffold_7G00181660
rosa_rugosa	Rorug03G0361600.1 Rorug06G0185900
rosa_samantha	Rh4AG055000 Rh4BG052900 Rh4CG059700 Rh4DG051400 Rh6AG297400 Rh6BG302800 Rh6CG307300 Rh6CG310700 Rh6DG294400
rosa_wichuraiana	Rw4G004390 Rw6G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1054
AatII	GACGTC	1 cut(s)	448
Acc36I	ACCTGC	3 cut(s)	1004, 1054, 1259
AccB1I	GGYRCC	1 cut(s)	917
AccB7I	CCANNNNNTGG	1 cut(s)	743
AciI	CCGC	4 cut(s)	133, 550, 615, 885
AclWI	GGATC	3 cut(s)	161, 204, 1292
AcoI	YGGCCR	2 cut(s)	130, 400
AcsI	RAATTY	1 cut(s)	670
AcuI	CTGAAG	3 cut(s)	61, 176, 501
AcyI	GRCGYC	1 cut(s)	445
AdeI	CACNNNGTG	2 cut(s)	917, 1064
AfaI	GTAC	7 cut(s)	74, 439, 704, 721, 832, 1018, 1109
AgeI	ACCGGT	1 cut(s)	839
AgsI	TTSAA	3 cut(s)	392, 1002, 1257
AjnI	CCWGG	4 cut(s)	137, 574, 913, 1201
AjuI	GAANNNNNNNTTGG	2 cut(s)	1270, 1302
AluBI	AGCT	7 cut(s)	22, 64, 395, 488, 860, 939, 1310
AluI	AGCT	7 cut(s)	22, 64, 395, 488, 860, 939, 1310
Alw21I	GWGCWC	4 cut(s)	766, 941, 1201, 1378
Alw26I	GTCTC	1 cut(s)	41
Alw44I	GTGCAC	1 cut(s)	762
AlwI	GGATC	3 cut(s)	161, 204, 1292
AlwNI	CAGNNNCTG	3 cut(s)	860, 863, 1073
AoxI	GGCC	3 cut(s)	130, 400, 1030
ApaLI	GTGCAC	1 cut(s)	762
ApeKI	GCWGC	7 cut(s)	256, 623, 857, 860, 863, 893, 1396
ApoI	RAATTY	1 cut(s)	670
AsiGI	ACCGGT	1 cut(s)	839
AspS9I	GGNCC	6 cut(s)	324, 782, 851, 908, 1031, 1328
AsuC2I	CCSGG	3 cut(s)	268, 768, 1035
AsuHPI	GGTGA	1 cut(s)	1050
AvaII	GGWCC	5 cut(s)	324, 782, 851, 908, 1328
BaeGI	GKGCMC	2 cut(s)	766, 922
BalI	TGGCCA	1 cut(s)	402
BanI	GGYRCC	1 cut(s)	917
BanII	GRGCYC	3 cut(s)	241, 556, 941
BauI	CACGAG	1 cut(s)	450
Bbv12I	GWGCWC	4 cut(s)	766, 941, 1201, 1378
BbvI	GCAGC	6 cut(s)	268, 610, 847, 850, 869, 880
BccI	CCATC	5 cut(s)	206, 215, 674, 1147, 1309
BceAI	ACGGC	3 cut(s)	103, 573, 1400
BciT130I	CCWGG	4 cut(s)	139, 576, 915, 1203
BciVI	GTATCC	1 cut(s)	1139
BcnI	CCSGG	3 cut(s)	268, 768, 1035
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	4 cut(s)	294, 903, 924, 1062
BfuAI	ACCTGC	3 cut(s)	1004, 1054, 1259
BfuI	GTATCC	1 cut(s)	1139
BglII	AGATCT	2 cut(s)	123, 1292
BisI	GCNGC	9 cut(s)	133, 257, 624, 858, 861, 864, 885, 894, 1397
BlsI	GCNGC	9 cut(s)	134, 258, 625, 859, 862, 865, 886, 895, 1398
BmcAI	AGTACT	3 cut(s)	74, 439, 721
Bme1390I	CCNGG	7 cut(s)	139, 268, 576, 768, 915, 1035, 1203
Bme18I	GGWCC	5 cut(s)	324, 782, 851, 908, 1328
BmgT120I	GGNCC	6 cut(s)	324, 782, 851, 908, 1031, 1328
BmiI	GGNNCC	2 cut(s)	919, 1033
BmrFI	CCNGG	7 cut(s)	139, 268, 576, 768, 915, 1035, 1203
BmsI	GCATC	4 cut(s)	556, 662, 1111, 1133
BoxI	GACNNNNGTC	1 cut(s)	107
BpmI	CTGGAG	3 cut(s)	648, 744, 1185
Bpu10I	CCTNAGC	1 cut(s)	1377
BpuEI	CTTGAG	1 cut(s)	1071
BpuMI	CCSGG	3 cut(s)	268, 768, 1035
Bsa29I	ATCGAT	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	9
BsaHI	GRCGYC	1 cut(s)	445
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	6 cut(s)	51, 137, 138, 574, 989, 1033
BsaWI	WCCGGW	1 cut(s)	839
Bse118I	RCCGGY	1 cut(s)	839
Bse1I	ACTGG	3 cut(s)	445, 727, 789
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	4 cut(s)	139, 576, 915, 1203
BseCI	ATCGAT	1 cut(s)	210
BseDI	CCNNGG	6 cut(s)	51, 137, 138, 574, 989, 1033
BseGI	GGATG	1 cut(s)	1124
BseJI	GATNNNNATC	1 cut(s)	9
BseMII	CTCAG	1 cut(s)	1391
BseNI	ACTGG	3 cut(s)	445, 727, 789
BseRI	GAGGAG	1 cut(s)	266
BseSI	GKGCMC	2 cut(s)	766, 922
BseX3I	CGGCCG	1 cut(s)	130
BseXI	GCAGC	6 cut(s)	268, 610, 847, 850, 869, 880
BseYI	CCCAGC	2 cut(s)	1073, 1392
BsgI	GTGCAG	3 cut(s)	1026, 1032, 1086
Bsh1285I	CGRYCG	2 cut(s)	13, 133
BshFI	GGCC	3 cut(s)	132, 402, 1032
BshNI	GGYRCC	1 cut(s)	917
BshTI	ACCGGT	1 cut(s)	839
BshVI	ATCGAT	1 cut(s)	210
BsiEI	CGRYCG	2 cut(s)	13, 133
BsiHKAI	GWGCWC	4 cut(s)	766, 941, 1201, 1378
BsiSI	CCGG	6 cut(s)	129, 267, 768, 840, 1035, 1331
BslFI	GGGAC	1 cut(s)	1163
BsmAI	GTCTC	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	1163
BsnI	GGCC	3 cut(s)	132, 402, 1032
Bso31I	GGTCTC	1 cut(s)	41
Bsp1286I	GDGCHC	7 cut(s)	241, 556, 766, 922, 941, 1201, 1378
Bsp143I	GATC	6 cut(s)	10, 123, 166, 196, 1292, 1297
BspACI	CCGC	4 cut(s)	133, 550, 615, 885
BspANI	GGCC	3 cut(s)	132, 402, 1032
BspCNI	CTCAG	1 cut(s)	1390
BspDI	ATCGAT	1 cut(s)	210
BspHI	TCATGA	2 cut(s)	111, 517
BspLI	GGNNCC	2 cut(s)	919, 1033
BspMI	ACCTGC	3 cut(s)	1004, 1054, 1259
BspPI	GGATC	3 cut(s)	161, 204, 1292
BspQI	GCTCTTC	1 cut(s)	561
BspT107I	GGYRCC	1 cut(s)	917
BspTNI	GGTCTC	1 cut(s)	41
BsrFI	RCCGGY	1 cut(s)	839
BsrI	ACTGG	3 cut(s)	445, 727, 789
BssAI	RCCGGY	1 cut(s)	839
BssECI	CCNNGG	6 cut(s)	51, 137, 138, 574, 989, 1033
BssMI	GATC	6 cut(s)	10, 123, 166, 196, 1292, 1297
BssNI	GRCGYC	1 cut(s)	445
BssSI	CACGAG	1 cut(s)	450
BssT1I	CCWWGG	1 cut(s)	989
Bst2BI	CACGAG	1 cut(s)	450
Bst2UI	CCWGG	4 cut(s)	139, 576, 915, 1203
Bst4CI	ACNGT	5 cut(s)	106, 223, 1112, 1151, 1235
Bst6I	CTCTTC	1 cut(s)	561
BstACI	GRCGYC	1 cut(s)	445
BstAPI	GCANNNNNTGC	4 cut(s)	863, 893, 1121, 1130
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	3 cut(s)	231, 362, 1377
BstEII	GGTNACC	1 cut(s)	662
BstF5I	GGATG	1 cut(s)	1124
BstKTI	GATC	6 cut(s)	13, 126, 169, 199, 1295, 1300
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	6 cut(s)	10, 123, 166, 196, 1292, 1297
BstMCI	CGRYCG	2 cut(s)	13, 133
BstMWI	GCNNNNNNNGC	9 cut(s)	87, 236, 863, 890, 893, 899, 1121, 1130, 1393
BstNI	CCWGG	4 cut(s)	139, 576, 915, 1203
BstNSI	RCATGY	1 cut(s)	709
BstPAI	GACNNNNGTC	1 cut(s)	107
BstPI	GGTNACC	1 cut(s)	662
BstSCI	CCNGG	7 cut(s)	137, 266, 574, 766, 913, 1033, 1201
BstSLI	GKGCMC	2 cut(s)	766, 922
BstV1I	GCAGC	6 cut(s)	268, 610, 847, 850, 869, 880
BstX2I	RGATCY	3 cut(s)	123, 166, 1292
BstXI	CCANNNNNNTGG	1 cut(s)	440
BstYI	RGATCY	3 cut(s)	123, 166, 1292
BstZI	CGGCCG	1 cut(s)	130
Bsu15I	ATCGAT	1 cut(s)	210
BsuI	GTATCC	1 cut(s)	1139
BsuRI	GGCC	3 cut(s)	132, 402, 1032
BsuTUI	ATCGAT	1 cut(s)	210
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	1124
BtsI	GCAGTG	3 cut(s)	1015, 1074, 1378
BtsIMutI	CAGTG	5 cut(s)	477, 1015, 1074, 1117, 1378
BveI	ACCTGC	3 cut(s)	1004, 1054, 1259
Cac8I	GCNNGC	1 cut(s)	552
CaiI	CAGNNNCTG	3 cut(s)	860, 863, 1073
CciI	TCATGA	2 cut(s)	111, 517
Cfr10I	RCCGGY	1 cut(s)	839
Cfr13I	GGNCC	6 cut(s)	324, 782, 851, 908, 1031, 1328
ClaI	ATCGAT	1 cut(s)	210
CsiI	ACCWGGT	1 cut(s)	913
Csp6I	GTAC	7 cut(s)	73, 438, 703, 720, 831, 1017, 1108
CspAI	ACCGGT	1 cut(s)	839
CspCI	CAANNNNNGTGG	2 cut(s)	559, 594
CviAII	CATG	7 cut(s)	42, 112, 404, 518, 595, 706, 933
CviQI	GTAC	7 cut(s)	73, 438, 703, 720, 831, 1017, 1108
DdeI	CTNAG	3 cut(s)	231, 362, 1377
DpnI	GATC	6 cut(s)	12, 125, 168, 198, 1294, 1299
DpnII	GATC	6 cut(s)	10, 123, 166, 196, 1292, 1297
DraI	TTTAAA	1 cut(s)	525
DraIII	CACNNNGTG	2 cut(s)	917, 1064
EaeI	YGGCCR	2 cut(s)	130, 400
EagI	CGGCCG	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	561
EciI	GGCGGA	1 cut(s)	630
Ecl136II	GAGCTC	1 cut(s)	939
EclXI	CGGCCG	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	989
Eco24I	GRGCYC	3 cut(s)	241, 556, 941
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	5 cut(s)	324, 782, 851, 908, 1328
Eco52I	CGGCCG	1 cut(s)	130
Eco53kI	GAGCTC	1 cut(s)	939
Eco57I	CTGAAG	3 cut(s)	61, 176, 501
Eco91I	GGTNACC	1 cut(s)	662
EcoICRI	GAGCTC	1 cut(s)	939
EcoO65I	GGTNACC	1 cut(s)	662
EcoRII	CCWGG	4 cut(s)	137, 574, 913, 1201
EcoT14I	CCWWGG	1 cut(s)	989
EcoT22I	ATGCAT	1 cut(s)	1126
EcoT38I	GRGCYC	3 cut(s)	241, 556, 941
ErhI	CCWWGG	1 cut(s)	989
FaeI	CATG	7 cut(s)	45, 115, 407, 521, 598, 709, 936
FaqI	GGGAC	1 cut(s)	1163
FatI	CATG	7 cut(s)	41, 111, 403, 517, 594, 705, 932
FauI	CCCGC	1 cut(s)	543
FauNDI	CATATG	1 cut(s)	676
Fnu4HI	GCNGC	9 cut(s)	133, 257, 624, 858, 861, 864, 885, 894, 1397
FokI	GGATG	1 cut(s)	1111
FriOI	GRGCYC	3 cut(s)	241, 556, 941
Fsp4HI	GCNGC	9 cut(s)	133, 257, 624, 858, 861, 864, 885, 894, 1397
FspBI	CTAG	4 cut(s)	294, 903, 924, 1062
GluI	GCNGC	9 cut(s)	133, 257, 624, 858, 861, 864, 885, 894, 1397
GsaI	CCCAGC	2 cut(s)	1077, 1396
GsuI	CTGGAG	3 cut(s)	648, 744, 1185
HaeIII	GGCC	3 cut(s)	132, 402, 1032
HapII	CCGG	6 cut(s)	129, 267, 768, 840, 1035, 1331
Hin1I	GRCGYC	1 cut(s)	445
Hin1II	CATG	7 cut(s)	45, 115, 407, 521, 598, 709, 936
HindIII	AAGCTT	4 cut(s)	20, 62, 393, 1308
HinfI	GANTC	4 cut(s)	5, 375, 692, 1253
HpaII	CCGG	6 cut(s)	129, 267, 768, 840, 1035, 1331
HphI	GGTGA	1 cut(s)	1050
Hpy166II	GTNNAC	3 cut(s)	764, 911, 1343
Hpy188I	TCNGA	3 cut(s)	10, 55, 1297
Hpy188III	TCNNGA	8 cut(s)	112, 179, 194, 246, 518, 954, 1143, 1314
Hpy8I	GTNNAC	3 cut(s)	764, 911, 1343
HpyAV	CCTTC	1 cut(s)	365
HpyCH4III	ACNGT	5 cut(s)	106, 223, 1112, 1151, 1235
HpyCH4IV	ACGT	2 cut(s)	445, 1165
HpyF10VI	GCNNNNNNNGC	9 cut(s)	87, 236, 863, 890, 893, 899, 1121, 1130, 1393
HpyF3I	CTNAG	3 cut(s)	231, 362, 1377
HpySE526I	ACGT	2 cut(s)	445, 1165
Hsp92I	GRCGYC	1 cut(s)	445
Hsp92II	CATG	7 cut(s)	45, 115, 407, 521, 598, 709, 936
Kzo9I	GATC	6 cut(s)	10, 123, 166, 196, 1292, 1297
LguI	GCTCTTC	1 cut(s)	561
LmnI	GCTCC	5 cut(s)	253, 936, 991, 1204, 1210
Lsp1109I	GCAGC	6 cut(s)	268, 610, 847, 850, 869, 880
LweI	GCATC	4 cut(s)	556, 662, 1111, 1133
MabI	ACCWGGT	1 cut(s)	913
MaeI	CTAG	4 cut(s)	294, 903, 924, 1062
MaeII	ACGT	2 cut(s)	445, 1165
MaeIII	GTNAC	3 cut(s)	406, 662, 770
MalI	GATC	6 cut(s)	12, 125, 168, 198, 1294, 1299
MboI	GATC	6 cut(s)	10, 123, 166, 196, 1292, 1297
MboII	GAAGA	5 cut(s)	182, 343, 494, 548, 741
MflI	RGATCY	3 cut(s)	123, 166, 1292
MhlI	GDGCHC	7 cut(s)	241, 556, 766, 922, 941, 1201, 1378
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	3 cut(s)	670, 798, 1318
MluNI	TGGCCA	1 cut(s)	402
MlyI	GAGTC	1 cut(s)	686
MmeI	TCCRAC	5 cut(s)	256, 322, 720, 1138, 1268
Mox20I	TGGCCA	1 cut(s)	402
Mph1103I	ATGCAT	1 cut(s)	1126
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	3 cut(s)	66, 524, 546
Msp20I	TGGCCA	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	860
MspI	CCGG	6 cut(s)	129, 267, 768, 840, 1035, 1331
MspR9I	CCNGG	7 cut(s)	139, 268, 576, 768, 915, 1035, 1203
MvaI	CCWGG	4 cut(s)	139, 576, 915, 1203
MwoI	GCNNNNNNNGC	9 cut(s)	87, 236, 863, 890, 893, 899, 1121, 1130, 1393
NciI	CCSGG	3 cut(s)	268, 768, 1035
NdeI	CATATG	1 cut(s)	676
NdeII	GATC	6 cut(s)	10, 123, 166, 196, 1292, 1297
NlaIII	CATG	7 cut(s)	45, 115, 407, 521, 598, 709, 936
NlaIV	GGNNCC	2 cut(s)	919, 1033
NsiI	ATGCAT	1 cut(s)	1126
NspI	RCATGY	1 cut(s)	709
PagI	TCATGA	2 cut(s)	111, 517
PaqCI	CACCTGC	1 cut(s)	1054
PasI	CCCWGGG	1 cut(s)	138
PciSI	GCTCTTC	1 cut(s)	561
PfeI	GAWTC	3 cut(s)	5, 375, 1253
PflMI	CCANNNNNTGG	1 cut(s)	743
PinAI	ACCGGT	1 cut(s)	839
PkrI	GCNGC	9 cut(s)	134, 258, 625, 859, 862, 865, 886, 895, 1398
Ple19I	CGATCG	1 cut(s)	13
PleI	GAGTC	1 cut(s)	686
PpsI	GAGTC	1 cut(s)	686
PshAI	GACNNNNGTC	1 cut(s)	107
Psp124BI	GAGCTC	1 cut(s)	941
Psp6I	CCWGG	4 cut(s)	137, 574, 913, 1201
PspEI	GGTNACC	1 cut(s)	662
PspFI	CCCAGC	2 cut(s)	1073, 1392
PspGI	CCWGG	4 cut(s)	137, 574, 913, 1201
PspN4I	GGNNCC	2 cut(s)	919, 1033
PspPI	GGNCC	6 cut(s)	324, 782, 851, 908, 1031, 1328
PstNI	CAGNNNCTG	3 cut(s)	860, 863, 1073
PsuI	RGATCY	3 cut(s)	123, 166, 1292
PvuI	CGATCG	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	860
RsaI	GTAC	7 cut(s)	74, 439, 704, 721, 832, 1018, 1109
RsaNI	GTAC	7 cut(s)	73, 438, 703, 720, 831, 1017, 1108
SacI	GAGCTC	1 cut(s)	941
SapI	GCTCTTC	1 cut(s)	561
SaqAI	TTAA	3 cut(s)	66, 524, 546
SatI	GCNGC	9 cut(s)	133, 257, 624, 858, 861, 864, 885, 894, 1397
Sau3AI	GATC	6 cut(s)	10, 123, 166, 196, 1292, 1297
Sau96I	GGNCC	6 cut(s)	324, 782, 851, 908, 1031, 1328
ScaI	AGTACT	3 cut(s)	74, 439, 721
SchI	GAGTC	1 cut(s)	686
ScrFI	CCNGG	7 cut(s)	139, 268, 576, 768, 915, 1035, 1203
SduI	GDGCHC	7 cut(s)	241, 556, 766, 922, 941, 1201, 1378
SexAI	ACCWGGT	1 cut(s)	913
SfaNI	GCATC	4 cut(s)	556, 662, 1111, 1133
SinI	GGWCC	5 cut(s)	324, 782, 851, 908, 1328
SmiI	ATTTAAAT	1 cut(s)	525
SmlI	CTYRAG	1 cut(s)	1086
SmoI	CTYRAG	1 cut(s)	1086
Sse9I	AATT	3 cut(s)	670, 798, 1318
SsiI	CCGC	4 cut(s)	133, 550, 615, 885
SspI	AATATT	1 cut(s)	386
SspMI	CTAG	4 cut(s)	294, 903, 924, 1062
SstI	GAGCTC	1 cut(s)	941
StyD4I	CCNGG	7 cut(s)	137, 266, 574, 766, 913, 1033, 1201
StyI	CCWWGG	1 cut(s)	989
SwaI	ATTTAAAT	1 cut(s)	525
TaaI	ACNGT	5 cut(s)	106, 223, 1112, 1151, 1235
TaiI	ACGT	2 cut(s)	448, 1168
TaqI	TCGA	3 cut(s)	180, 210, 685
TasI	AATT	3 cut(s)	670, 798, 1318
TatI	WGTACW	3 cut(s)	72, 437, 719
TauI	GCSGC	2 cut(s)	135, 887
TfiI	GAWTC	3 cut(s)	5, 375, 1253
Tru1I	TTAA	3 cut(s)	66, 524, 546
Tru9I	TTAA	3 cut(s)	66, 524, 546
TscAI	CASTG	5 cut(s)	484, 1015, 1074, 1117, 1378
TseI	GCWGC	7 cut(s)	256, 623, 857, 860, 863, 893, 1396
TspDTI	ATGAA	4 cut(s)	30, 459, 506, 663
TspGWI	ACGGA	2 cut(s)	368, 885
TspRI	CASTG	5 cut(s)	484, 1015, 1074, 1117, 1378
Van91I	CCANNNNNTGG	1 cut(s)	743
VneI	GTGCAC	1 cut(s)	762
VpaK11BI	GGWCC	5 cut(s)	324, 782, 851, 908, 1328
XapI	RAATTY	1 cut(s)	670
XceI	RCATGY	1 cut(s)	709
XspI	CTAG	4 cut(s)	294, 903, 924, 1062
ZraI	GACGTC	1 cut(s)	446
ZrmI	AGTACT	3 cut(s)	74, 439, 721
Zsp2I	ATGCAT	1 cut(s)	1126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.